RchiOBHm_Chr6g0307601

BRI1 kinase inhibitor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012335
Physical Location & Seq
Forward (+)
65888655 .. 65889493
839 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27655

Sequence Viewer

Length: 744 bp
ATGGACACCCATCTGCTTGAAAAGACCAGAGAAAAAGCTGCAGGCAACAACATGCTTCAAGAAAAGCCACAGTCACCGGTTACAGCCTCACCACCCTCAGCTTCCTCTTCTCCTTCTCATGAATTCTCCTTCACAGTCTCTCTTCATCACTCTTCTTCCACATCAATCCCTGATCATAGTAAGAACAACAACAAAGCCAAAACTCCGCCTTCTTTCGCTATTGACTTGTCTCCTGCAGATGACATTTTCTTCCATGGCCATTTGCTTCCTTTGCAGTTCCTCTCTCACCTTCCTATCTCTCCTCGCTCCTCTACTAACTCCTTAGATAGCTTCACTCTTCCCATTAGAGACTTAGTAGACGATCAAGAACCAACCAAGGAAAGCAACAACTGTAGCACAGCATTGGGAGCAACAACATCATCAACAAGAAGAAGAGCAACAGCAGCAGCAATATCCAAGAGAGCAAGAGCCGCAATGGCGAGACGAGGGGAGAACCAAGTCCAAGTCCTTTTCGATTTTCGGGTTACCAAAAAGGCGAAAAGATTGCGAAGAGAGGGAGGACAAGGAGGGGAAGCACAAGAGGAAGATGAGGGGAAGAAAGAGAATGTCCATTTTAGTAGGCAGCCTTATTCGTTTTCGGGTAATTTGAGCCCCAGAAATAAGCATCACTTGAGAGGAAGGAGAGGAGAGTTCTCAGCACCAGCATCAATGAGGACATCTCCAACAAATAGTGGCTTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.16

Weight (kDa)

9.93

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42750
fragaria_vesca FvH4_2g34560
malus_domestica MD08G1102600.v1.1 MD15G1084100.v1.1
prunus_persica Prupe.1G437500_v2.0.a1
pyrus_communis pycom08g08410 pycom15g07930
rosa_chinensis RchiOBHm_Chr6g0307601 RchiOBHm_Chr6g0307761
rosa_laevigata RLG00000010702
rosa_multiflora Rmu_co8485591.1_g000001 Rmu_sc0000031.1_g000029
rosa_roxburghii Rroxscaffold_7G00160910
rosa_rugosa Rorug06G0360600
rosa_samantha Rh6AG469700 Rh6BG480200 Rh6CG485900 Rh6DG472400
rosa_wichuraiana Rw6G041010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 357
AciI CCGC 2 cut(s) 206, 471
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 1 cut(s) 122
AgeI ACCGGT 1 cut(s) 76
AgsI TTSAA 2 cut(s) 20, 59
AluBI AGCT 3 cut(s) 38, 101, 330
AluI AGCT 3 cut(s) 38, 101, 330
Alw26I GTCTC 4 cut(s) 142, 234, 342, 475
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 4 cut(s) 38, 443, 446, 622
ApoI RAATTY 1 cut(s) 122
AsiGI ACCGGT 1 cut(s) 76
AsuHPI GGTGA 3 cut(s) 66, 81, 278
BalI TGGCCA 1 cut(s) 258
BanII GRGCYC 1 cut(s) 653
BbvCI CCTCAGC 1 cut(s) 97
BbvI GCAGC 4 cut(s) 25, 455, 458, 634
BccI CCATC 1 cut(s) 18
BcgI CGANNNNNNTGC 2 cut(s) 526, 560
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 4 cut(s) 142, 234, 342, 475
BfaI CTAG 1 cut(s) 742
BfmI CTRYAG 3 cut(s) 39, 234, 391
BglI GCCNNNNNGGC 1 cut(s) 476
BisI GCNGC 5 cut(s) 39, 444, 447, 471, 623
BlsI GCNGC 5 cut(s) 40, 445, 448, 472, 624
BmsI GCATC 2 cut(s) 673, 713
BplI GAGNNNNNCTC 2 cut(s) 703, 735
Bpu10I CCTNAGC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 691
BsaJI CCNNGG 2 cut(s) 253, 375
BsaWI WCCGGW 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 253, 375
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 2 cut(s) 111, 708
BseRI GAGGAG 3 cut(s) 291, 298, 699
BseXI GCAGC 4 cut(s) 25, 455, 458, 634
BshFI GGCC 1 cut(s) 258
BshTI ACCGGT 1 cut(s) 76
BsiSI CCGG 1 cut(s) 77
BsmAI GTCTC 4 cut(s) 142, 234, 342, 475
BsmBI CGTCTC 1 cut(s) 475
BsnI GGCC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 653
Bsp143I GATC 2 cut(s) 172, 361
Bsp19I CCATGG 1 cut(s) 253
BspACI CCGC 2 cut(s) 206, 471
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 2 cut(s) 110, 707
BspHI TCATGA 1 cut(s) 118
BspMAI CTGCAG 2 cut(s) 43, 238
BspQI GCTCTTC 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 253, 375
BssMI GATC 2 cut(s) 172, 361
BssT1I CCWWGG 2 cut(s) 253, 375
Bst4CI ACNGT 3 cut(s) 72, 136, 392
Bst6I CTCTTC 6 cut(s) 112, 147, 157, 342, 427, 544
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 4 cut(s) 97, 322, 352, 694
BstDSI CCRYGG 1 cut(s) 253
BstEII GGTNACC 1 cut(s) 523
BstKTI GATC 2 cut(s) 175, 364
BstMAI GTCTC 4 cut(s) 142, 234, 342, 475
BstMBI GATC 2 cut(s) 172, 361
BstMWI GCNNNNNNNGC 5 cut(s) 271, 407, 443, 470, 476
BstNSI RCATGY 1 cut(s) 55
BstPI GGTNACC 1 cut(s) 523
BstSFI CTRYAG 3 cut(s) 39, 234, 391
BstV1I GCAGC 4 cut(s) 25, 455, 458, 634
BsuRI GGCC 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 43
CciI TCATGA 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 76
CspAI ACCGGT 1 cut(s) 76
CviAII CATG 3 cut(s) 52, 119, 254
DdeI CTNAG 4 cut(s) 97, 322, 352, 694
DpnI GATC 2 cut(s) 174, 363
DpnII GATC 2 cut(s) 172, 361
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 6 cut(s) 112, 147, 157, 342, 427, 544
EarI CTCTTC 6 cut(s) 112, 147, 157, 342, 427, 544
EciI GGCGGA 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 253, 375
Eco24I GRGCYC 1 cut(s) 653
Eco91I GGTNACC 1 cut(s) 523
EcoO65I GGTNACC 1 cut(s) 523
EcoRI GAATTC 1 cut(s) 122
EcoT14I CCWWGG 2 cut(s) 253, 375
EcoT38I GRGCYC 1 cut(s) 653
ErhI CCWWGG 2 cut(s) 253, 375
Esp3I CGTCTC 1 cut(s) 475
FaeI CATG 3 cut(s) 55, 122, 257
FaiI YATR 4 cut(s) 53, 120, 177, 255
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FatI CATG 3 cut(s) 51, 118, 253
FbaI TGATCA 1 cut(s) 172
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 5 cut(s) 39, 444, 447, 471, 623
FriOI GRGCYC 1 cut(s) 653
Fsp4HI GCNGC 5 cut(s) 39, 444, 447, 471, 623
FspBI CTAG 1 cut(s) 742
GluI GCNGC 5 cut(s) 39, 444, 447, 471, 623
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 77
Hin1II CATG 3 cut(s) 55, 122, 257
HpaII CCGG 1 cut(s) 77
HphI GGTGA 3 cut(s) 66, 81, 278
Hpy166II GTNNAC 1 cut(s) 358
Hpy188III TCNNGA 3 cut(s) 59, 119, 365
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 5 cut(s) 123, 139, 219, 299, 672
HpyCH4III ACNGT 3 cut(s) 72, 136, 392
HpyCH4V TGCA 3 cut(s) 41, 236, 274
HpyF10VI GCNNNNNNNGC 5 cut(s) 271, 407, 443, 470, 476
HpyF3I CTNAG 4 cut(s) 97, 322, 352, 694
Hsp92II CATG 3 cut(s) 55, 122, 257
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 2 cut(s) 172, 361
LguI GCTCTTC 1 cut(s) 427
LmnI GCTCC 2 cut(s) 311, 407
LpnPI CCDG 7 cut(s) 27, 40, 90, 183, 246, 667, 714
Lsp1109I GCAGC 4 cut(s) 25, 455, 458, 634
LweI GCATC 2 cut(s) 673, 713
MaeI CTAG 1 cut(s) 742
MaeIII GTNAC 3 cut(s) 72, 79, 523
MalI GATC 2 cut(s) 174, 363
MboI GATC 2 cut(s) 172, 361
MhlI GDGCHC 1 cut(s) 653
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 2 cut(s) 122, 643
MluNI TGGCCA 1 cut(s) 258
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 258
MspI CCGG 1 cut(s) 77
MwoI GCNNNNNNNGC 5 cut(s) 271, 407, 443, 470, 476
NcoI CCATGG 1 cut(s) 253
NdeII GATC 2 cut(s) 172, 361
NlaIII CATG 3 cut(s) 55, 122, 257
NmuCI GTSAC 1 cut(s) 72
NspI RCATGY 1 cut(s) 55
PagI TCATGA 1 cut(s) 118
PciSI GCTCTTC 1 cut(s) 427
PinAI ACCGGT 1 cut(s) 76
PkrI GCNGC 5 cut(s) 40, 445, 448, 472, 624
PspEI GGTNACC 1 cut(s) 523
PstI CTGCAG 2 cut(s) 43, 238
SapI GCTCTTC 1 cut(s) 427
SatI GCNGC 5 cut(s) 39, 444, 447, 471, 623
Sau3AI GATC 2 cut(s) 172, 361
SduI GDGCHC 1 cut(s) 653
SetI ASST 4 cut(s) 40, 103, 291, 332
SfaNI GCATC 2 cut(s) 673, 713
SfcI CTRYAG 3 cut(s) 39, 234, 391
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 2 cut(s) 122, 643
SsiI CCGC 2 cut(s) 206, 471
SspMI CTAG 1 cut(s) 742
StyI CCWWGG 2 cut(s) 253, 375
TaaI ACNGT 3 cut(s) 72, 136, 392
TaqI TCGA 1 cut(s) 513
TasI AATT 2 cut(s) 122, 643
TauI GCSGC 1 cut(s) 473
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 4 cut(s) 38, 443, 446, 622
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 2 cut(s) 134, 135
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.