Rh6CG485900

BRI1 kinase inhibitor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012335
Physical Location & Seq
Forward (+)
65428385 .. 65431426
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG485900.1

Sequence Viewer

Length: 948 bp
ATGGACAACCATCTGCTTGAAAAGACCAGAGAAAAAGCTGCAGGCAACGACATGCTTCAAGAAAAGCCACAGTCACCGGTTACAGCCTCACCACCCTCAGCTTCCTCTTCTCCTTCTCATGAATTCTCCTTCACAGTCTCTCTTCATCACTCTTCTTCCACATCAATCCCTGATCATAGTAAGAACAACAACAAAGCCAAAACTCCGCCTTCTTTCGCTATTGACTTGTCTCCTGCAGATGACATTTTCTTCCATGGCCATTTGCTTCCTTTGCAGTTCCTCTCTCACCTTCCTATCTCTCCTCGCTCCTCTACTAACTCCTTAGATAGCTTCACTCTTCCCATTAGAGACTTAGTAGACGATCAAGAACCAACCAAGGAAAGCAACAACTGTAGCACCAGCATTGGGAGCAACAACAACATCATCAACAAGAAGAAGAGCAACAGCAGCAGCAATATCCAAGAGAGCAAGAGCCGCAATGGCGAGACGAGGGGGAGAACCAAGTCCAAGTCCTTTTCGATTTTCGGGTTACCAAAAAGGCGAAAAGATTGCGAAGAGAGGGAGGACAAGGAGGGGAAGCACAAGAGGAAGATGAGGTTTGATGTGAGTAATATACTAAAGAGGTATGTGAGGATGGTCAGGCCCTTATTGTTCTTTAGAGGAAGAAAAGAGAATGTCCATTTTAGTAGGCAGCCTTATTCGTTTTCGGGTAATTTGAGCCCCAGAAATAAGCATCACTTGAGAGGAAGGAGAGGAGAGTTCTCAGCACCAGCATCAATGAGGACATCTCCAACAAATAGTGGGCTTCTTCTAGCAACTTCAGGAGCAACTACTCCTACTAATACCAGTGATAGTACCATGGAAGAGTTGCAAGCAGCAATTCAAGCCGCAATTGCTCATTGCAAGAATTCCATTGCCACAGAAGAGAAGATTAAATGCGTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

35.06

Weight (kDa)

9.74

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42750
fragaria_vesca FvH4_2g34560
malus_domestica MD08G1102600.v1.1 MD15G1084100.v1.1
prunus_persica Prupe.1G437500_v2.0.a1
pyrus_communis pycom08g08410 pycom15g07930
rosa_chinensis RchiOBHm_Chr6g0307601 RchiOBHm_Chr6g0307761
rosa_laevigata RLG00000010702
rosa_multiflora Rmu_co8485591.1_g000001 Rmu_sc0000031.1_g000029
rosa_roxburghii Rroxscaffold_7G00160910
rosa_rugosa Rorug06G0360600
rosa_samantha Rh6AG469700 Rh6BG480200 Rh6CG485900 Rh6DG472400
rosa_wichuraiana Rw6G041010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 357
AciI CCGC 3 cut(s) 206, 475, 888
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 2 cut(s) 122, 907
AcuI CTGAAG 1 cut(s) 804
AfaI GTAC 1 cut(s) 856
AfiI CCNNNNNNNGG 1 cut(s) 405
AgeI ACCGGT 1 cut(s) 76
AgsI TTSAA 3 cut(s) 20, 59, 884
AluBI AGCT 3 cut(s) 38, 101, 330
AluI AGCT 3 cut(s) 38, 101, 330
Alw26I GTCTC 4 cut(s) 142, 234, 342, 479
AoxI GGCC 2 cut(s) 256, 641
ApeKI GCWGC 5 cut(s) 38, 447, 450, 691, 875
ApoI RAATTY 2 cut(s) 122, 907
AsiGI ACCGGT 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 642
AsuHPI GGTGA 3 cut(s) 66, 81, 278
BalI TGGCCA 1 cut(s) 258
BanII GRGCYC 1 cut(s) 722
BbvCI CCTCAGC 1 cut(s) 97
BbvI GCAGC 5 cut(s) 25, 459, 462, 703, 887
BccI CCATC 2 cut(s) 18, 628
BcgI CGANNNNNNTGC 2 cut(s) 531, 565
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 4 cut(s) 142, 234, 342, 479
BfaI CTAG 1 cut(s) 812
BfmI CTRYAG 3 cut(s) 39, 234, 391
BglI GCCNNNNNGGC 1 cut(s) 480
BisI GCNGC 7 cut(s) 39, 448, 451, 475, 692, 876, 888
BlsI GCNGC 7 cut(s) 40, 449, 452, 476, 693, 877, 889
BmgT120I GGNCC 1 cut(s) 642
BmsI GCATC 2 cut(s) 742, 782
BplI GAGNNNNNCTC 2 cut(s) 772, 804
Bpu10I CCTNAGC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 760
BsaJI CCNNGG 3 cut(s) 253, 375, 858
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 846
Bse3DI GCAATG 3 cut(s) 484, 898, 912
BseDI CCNNGG 3 cut(s) 253, 375, 858
BseGI GGATG 1 cut(s) 639
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMI GCAATG 3 cut(s) 484, 898, 912
BseMII CTCAG 2 cut(s) 111, 777
BseNI ACTGG 1 cut(s) 846
BseRI GAGGAG 3 cut(s) 291, 298, 768
BseXI GCAGC 5 cut(s) 25, 459, 462, 703, 887
BshFI GGCC 2 cut(s) 258, 643
BshTI ACCGGT 1 cut(s) 76
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 405
BsmAI GTCTC 4 cut(s) 142, 234, 342, 479
BsmBI CGTCTC 1 cut(s) 479
BsnI GGCC 2 cut(s) 258, 643
Bsp1286I GDGCHC 1 cut(s) 722
Bsp143I GATC 2 cut(s) 172, 361
Bsp19I CCATGG 2 cut(s) 253, 858
BspACI CCGC 3 cut(s) 206, 475, 888
BspANI GGCC 2 cut(s) 258, 643
BspCNI CTCAG 2 cut(s) 110, 776
BspHI TCATGA 1 cut(s) 118
BspMAI CTGCAG 2 cut(s) 43, 238
BspQI GCTCTTC 1 cut(s) 431
BsrDI GCAATG 3 cut(s) 484, 898, 912
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 1 cut(s) 846
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 3 cut(s) 253, 375, 858
BssMI GATC 2 cut(s) 172, 361
BssT1I CCWWGG 3 cut(s) 253, 375, 858
Bst4CI ACNGT 3 cut(s) 72, 136, 392
Bst6I CTCTTC 8 cut(s) 112, 147, 157, 342, 431, 549, 858, 918
BstC8I GCNNGC 2 cut(s) 43, 873
BstDEI CTNAG 4 cut(s) 97, 322, 352, 763
BstDSI CCRYGG 2 cut(s) 253, 858
BstEII GGTNACC 1 cut(s) 528
BstF5I GGATG 1 cut(s) 639
BstKTI GATC 2 cut(s) 175, 364
BstMAI GTCTC 4 cut(s) 142, 234, 342, 479
BstMBI GATC 2 cut(s) 172, 361
BstMWI GCNNNNNNNGC 7 cut(s) 271, 408, 447, 474, 480, 884, 893
BstNSI RCATGY 1 cut(s) 55
BstPI GGTNACC 1 cut(s) 528
BstSFI CTRYAG 3 cut(s) 39, 234, 391
BstV1I GCAGC 5 cut(s) 25, 459, 462, 703, 887
BsuRI GGCC 2 cut(s) 258, 643
BtgI CCRYGG 2 cut(s) 253, 858
BtsCI GGATG 1 cut(s) 639
BtsIMutI CAGTG 1 cut(s) 853
Cac8I GCNNGC 2 cut(s) 43, 873
CciI TCATGA 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 642
Csp6I GTAC 1 cut(s) 855
CspAI ACCGGT 1 cut(s) 76
CviAII CATG 4 cut(s) 52, 119, 254, 859
CviQI GTAC 1 cut(s) 855
DdeI CTNAG 4 cut(s) 97, 322, 352, 763
DpnI GATC 2 cut(s) 174, 363
DpnII GATC 2 cut(s) 172, 361
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 8 cut(s) 112, 147, 157, 342, 431, 549, 858, 918
EarI CTCTTC 8 cut(s) 112, 147, 157, 342, 431, 549, 858, 918
EciI GGCGGA 1 cut(s) 195
Eco130I CCWWGG 3 cut(s) 253, 375, 858
Eco24I GRGCYC 1 cut(s) 722
Eco57I CTGAAG 1 cut(s) 804
Eco91I GGTNACC 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 642
EcoO65I GGTNACC 1 cut(s) 528
EcoRI GAATTC 2 cut(s) 122, 907
EcoT14I CCWWGG 3 cut(s) 253, 375, 858
EcoT38I GRGCYC 1 cut(s) 722
ErhI CCWWGG 3 cut(s) 253, 375, 858
Esp3I CGTCTC 1 cut(s) 479
FaeI CATG 4 cut(s) 55, 122, 257, 862
FaiI YATR 7 cut(s) 53, 120, 177, 255, 614, 627, 860
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FatI CATG 4 cut(s) 51, 118, 253, 858
FbaI TGATCA 1 cut(s) 172
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 7 cut(s) 39, 448, 451, 475, 692, 876, 888
FokI GGATG 1 cut(s) 646
FriOI GRGCYC 1 cut(s) 722
Fsp4HI GCNGC 7 cut(s) 39, 448, 451, 475, 692, 876, 888
FspBI CTAG 1 cut(s) 812
GluI GCNGC 7 cut(s) 39, 448, 451, 475, 692, 876, 888
HaeIII GGCC 2 cut(s) 258, 643
HapII CCGG 1 cut(s) 77
Hin1II CATG 4 cut(s) 55, 122, 257, 862
HpaII CCGG 1 cut(s) 77
HphI GGTGA 3 cut(s) 66, 81, 278
Hpy166II GTNNAC 1 cut(s) 358
Hpy188III TCNNGA 4 cut(s) 59, 119, 365, 822
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 5 cut(s) 123, 139, 219, 299, 741
HpyCH4III ACNGT 3 cut(s) 72, 136, 392
HpyCH4V TGCA 5 cut(s) 41, 236, 274, 871, 903
HpyF10VI GCNNNNNNNGC 7 cut(s) 271, 408, 447, 474, 480, 884, 893
HpyF3I CTNAG 4 cut(s) 97, 322, 352, 763
Hsp92II CATG 4 cut(s) 55, 122, 257, 862
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 2 cut(s) 172, 361
LguI GCTCTTC 1 cut(s) 431
LmnI GCTCC 3 cut(s) 311, 408, 824
Lsp1109I GCAGC 5 cut(s) 25, 459, 462, 703, 887
LweI GCATC 2 cut(s) 742, 782
MaeI CTAG 1 cut(s) 812
MaeIII GTNAC 3 cut(s) 72, 79, 528
MalI GATC 2 cut(s) 174, 363
MboI GATC 2 cut(s) 172, 361
MfeI CAATTG 1 cut(s) 891
MhlI GDGCHC 1 cut(s) 722
MlsI TGGCCA 1 cut(s) 258
MluCI AATT 5 cut(s) 122, 712, 879, 891, 907
MluNI TGGCCA 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 815
Mox20I TGGCCA 1 cut(s) 258
MscI TGGCCA 1 cut(s) 258
MseI TTAA 1 cut(s) 933
Msp20I TGGCCA 1 cut(s) 258
MspI CCGG 1 cut(s) 77
MunI CAATTG 1 cut(s) 891
MwoI GCNNNNNNNGC 7 cut(s) 271, 408, 447, 474, 480, 884, 893
NcoI CCATGG 2 cut(s) 253, 858
NdeII GATC 2 cut(s) 172, 361
NlaIII CATG 4 cut(s) 55, 122, 257, 862
NmuCI GTSAC 1 cut(s) 72
NspI RCATGY 1 cut(s) 55
PagI TCATGA 1 cut(s) 118
PciSI GCTCTTC 1 cut(s) 431
PinAI ACCGGT 1 cut(s) 76
PkrI GCNGC 7 cut(s) 40, 449, 452, 476, 693, 877, 889
PspEI GGTNACC 1 cut(s) 528
PspPI GGNCC 1 cut(s) 642
PstI CTGCAG 2 cut(s) 43, 238
RsaI GTAC 1 cut(s) 856
RsaNI GTAC 1 cut(s) 855
SapI GCTCTTC 1 cut(s) 431
SaqAI TTAA 1 cut(s) 933
SatI GCNGC 7 cut(s) 39, 448, 451, 475, 692, 876, 888
Sau3AI GATC 2 cut(s) 172, 361
Sau96I GGNCC 1 cut(s) 642
SduI GDGCHC 1 cut(s) 722
SetI ASST 6 cut(s) 40, 103, 291, 332, 599, 626
SfaNI GCATC 2 cut(s) 742, 782
SfcI CTRYAG 3 cut(s) 39, 234, 391
SmlI CTYRAG 1 cut(s) 739
SmoI CTYRAG 1 cut(s) 739
Sse9I AATT 5 cut(s) 122, 712, 879, 891, 907
SsiI CCGC 3 cut(s) 206, 475, 888
SspMI CTAG 1 cut(s) 812
StyI CCWWGG 3 cut(s) 253, 375, 858
TaaI ACNGT 3 cut(s) 72, 136, 392
TaqI TCGA 1 cut(s) 518
TasI AATT 5 cut(s) 122, 712, 879, 891, 907
TauI GCSGC 2 cut(s) 477, 890
Tru1I TTAA 1 cut(s) 933
Tru9I TTAA 1 cut(s) 933
TscAI CASTG 1 cut(s) 853
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 5 cut(s) 38, 447, 450, 691, 875
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 2 cut(s) 134, 135
TspRI CASTG 1 cut(s) 853
XapI RAATTY 2 cut(s) 122, 907
XceI RCATGY 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.