Rorug06G0360600

BRI1 kinase inhibitor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012335
Physical Location & Seq
Forward (+)
50901446 .. 50902658
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0360600.1

Sequence Viewer

Length: 396 bp
ATGTCGTGGCAGGCATACGTGGATGATCACTTGATGTGCGACGTCGACGGCCACCACCTGACCGCCGCGGCCATCGTCGGTCATGACGGTAGTGTGTGGGCTCAGAGCTCAAGCTTCCCTCAGTTCAAGCCGGAAGAAGTTGCAGCGATAATGAAAGATTTCGATGCGCCAGGGTCTCTTGCCCCAACTGGATTGCACCTTGGTGGCACAAAGTACATGGTTATTCAGGGGGAGAGTGGAGCCGTAATTCGTGGAAAGAAGGGTTCTGGTGGCATTACTGTGAAGAAAACCAGCCAGGCTATGATTTTAGGTATTTATGATGAGCCTTTGACACCCGGACAGTGTAACATGATCGTGGAAAGGTTGGGAGATTACCTGATTGACCAGGGCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.95

Weight (kDa)

5.14

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 1 - 131 1.9e-45 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42750
fragaria_vesca FvH4_2g34560
malus_domestica MD08G1102600.v1.1 MD15G1084100.v1.1
prunus_persica Prupe.1G437500_v2.0.a1
pyrus_communis pycom08g08410 pycom15g07930
rosa_chinensis RchiOBHm_Chr6g0307601 RchiOBHm_Chr6g0307761
rosa_laevigata RLG00000010702
rosa_multiflora Rmu_co8485591.1_g000001 Rmu_sc0000031.1_g000029
rosa_roxburghii Rroxscaffold_7G00160910
rosa_rugosa Rorug06G0360600
rosa_samantha Rh6AG469700 Rh6BG480200 Rh6CG485900 Rh6DG472400
rosa_wichuraiana Rw6G041010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
AccI GTMKAC 1 cut(s) 45
AccII CGCG 1 cut(s) 68
AciI CCGC 3 cut(s) 63, 66, 68
AcoI YGGCCR 2 cut(s) 49, 69
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 215
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 3 cut(s) 169, 294, 384
AleI CACNNNNGTG 1 cut(s) 201
AluBI AGCT 2 cut(s) 108, 114
AluI AGCT 2 cut(s) 108, 114
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 180
AoxI GGCC 3 cut(s) 49, 69, 388
ApeKI GCWGC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 388
AsuC2I CCSGG 1 cut(s) 336
BanII GRGCYC 2 cut(s) 103, 110
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 155
BccI CCATC 1 cut(s) 80
BceAI ACGGC 2 cut(s) 64, 227
BciT130I CCWGG 3 cut(s) 171, 296, 386
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 392
BisI GCNGC 3 cut(s) 66, 69, 144
BlsI GCNGC 3 cut(s) 67, 70, 145
Bme1390I CCNGG 4 cut(s) 171, 296, 336, 386
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 4 cut(s) 171, 296, 336, 386
BmsI GCATC 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 4 cut(s) 66, 170, 199, 385
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 3 cut(s) 171, 296, 386
BseDI CCNNGG 4 cut(s) 66, 170, 199, 385
BseGI GGATG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 116, 134
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 3 cut(s) 51, 71, 390
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 2 cut(s) 131, 336
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 3 cut(s) 51, 71, 390
Bso31I GGTCTC 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 103, 110
Bsp143I GATC 2 cut(s) 25, 351
BspACI CCGC 3 cut(s) 63, 66, 68
BspANI GGCC 3 cut(s) 51, 71, 390
BspCNI CTCAG 2 cut(s) 115, 133
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 4 cut(s) 66, 170, 199, 385
BssMI GATC 2 cut(s) 25, 351
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 3 cut(s) 171, 296, 386
Bst4CI ACNGT 3 cut(s) 89, 280, 342
BstACI GRCGYC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 102, 120
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 2 cut(s) 28, 354
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 2 cut(s) 25, 351
BstNI CCWGG 3 cut(s) 171, 296, 386
BstSCI CCNGG 4 cut(s) 169, 294, 334, 384
BstSFI CTRYAG 1 cut(s) 392
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 155
BsuRI GGCC 3 cut(s) 51, 71, 390
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 1 cut(s) 12
CciI TCATGA 1 cut(s) 82
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 388
Cfr42I CCGCGG 1 cut(s) 69
Csp6I GTAC 1 cut(s) 214
CviAII CATG 3 cut(s) 83, 217, 349
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 2 cut(s) 102, 120
DpnI GATC 2 cut(s) 27, 353
DpnII GATC 2 cut(s) 25, 351
EaeI YGGCCR 2 cut(s) 49, 69
Ecl136II GAGCTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 199
Eco24I GRGCYC 2 cut(s) 103, 110
Eco31I GGTCTC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 108
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 3 cut(s) 169, 294, 384
EcoT14I CCWWGG 1 cut(s) 199
EcoT38I GRGCYC 2 cut(s) 103, 110
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 3 cut(s) 86, 220, 352
FaiI YATR 7 cut(s) 16, 84, 218, 302, 318, 350, 394
FatI CATG 3 cut(s) 82, 216, 348
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 66, 69, 144
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 2 cut(s) 103, 110
Fsp4HI GCNGC 3 cut(s) 66, 69, 144
GlaI GCGC 1 cut(s) 168
GluI GCNGC 3 cut(s) 66, 69, 144
HaeIII GGCC 3 cut(s) 51, 71, 390
HapII CCGG 2 cut(s) 131, 336
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 3 cut(s) 86, 220, 352
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 112
HpaII CCGG 2 cut(s) 131, 336
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 4 cut(s) 44, 47, 50, 80
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 3 cut(s) 89, 280, 342
HpyCH4IV ACGT 2 cut(s) 18, 42
HpyCH4V TGCA 2 cut(s) 143, 196
HpyF3I CTNAG 2 cut(s) 102, 120
HpySE526I ACGT 2 cut(s) 18, 42
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 3 cut(s) 86, 220, 352
HspAI GCGC 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 25
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 2 cut(s) 25, 351
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 1 cut(s) 154
MaeII ACGT 2 cut(s) 18, 42
MaeIII GTNAC 1 cut(s) 344
MalI GATC 2 cut(s) 27, 353
MboI GATC 2 cut(s) 25, 351
MboII GAAGA 2 cut(s) 146, 295
MhlI GDGCHC 2 cut(s) 103, 110
MluCI AATT 1 cut(s) 246
MnlI CCTC 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 158
MslI CAYNNNNRTG 3 cut(s) 201, 278, 353
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 2 cut(s) 131, 336
MspR9I CCNGG 4 cut(s) 171, 296, 336, 386
MvaI CCWGG 3 cut(s) 171, 296, 386
MvnI CGCG 1 cut(s) 68
NciI CCSGG 1 cut(s) 336
NdeII GATC 2 cut(s) 25, 351
NlaIII CATG 3 cut(s) 86, 220, 352
NlaIV GGNNCC 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 201
PagI TCATGA 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 158
PkrI GCNGC 3 cut(s) 67, 70, 145
Ppu21I YACGTR 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 110
Psp6I CCWGG 3 cut(s) 169, 294, 384
PspGI CCWGG 3 cut(s) 169, 294, 384
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 388
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 3 cut(s) 201, 278, 353
SacI GAGCTC 1 cut(s) 110
SacII CCGCGG 1 cut(s) 69
SalI GTCGAC 1 cut(s) 44
SatI GCNGC 3 cut(s) 66, 69, 144
Sau3AI GATC 2 cut(s) 25, 351
Sau96I GGNCC 1 cut(s) 388
ScrFI CCNGG 4 cut(s) 171, 296, 336, 386
SduI GDGCHC 2 cut(s) 103, 110
SetI ASST 9 cut(s) 21, 45, 60, 110, 116, 201, 313, 365, 378
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 392
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SgrDI CGTCGACG 1 cut(s) 44
SmiMI CAYNNNNRTG 3 cut(s) 201, 278, 353
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 1 cut(s) 246
SsiI CCGC 3 cut(s) 63, 66, 68
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 4 cut(s) 169, 294, 334, 384
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 3 cut(s) 89, 280, 342
TaiI ACGT 2 cut(s) 21, 45
TaqI TCGA 2 cut(s) 45, 162
TaqII GACCGA 1 cut(s) 68
TasI AATT 1 cut(s) 246
TatI WGTACW 1 cut(s) 213
TauI GCSGC 2 cut(s) 68, 71
TscAI CASTG 1 cut(s) 347
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 45
XmnI GAANNNNTTC 1 cut(s) 158
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.