Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012335

Physical Location & Seq

Genomic Coordinates Reverse (-)

37274129 .. 37275151

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G437500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGCACCCATCAGCAGGAAAAGACCAGAGAAAAAGCTGTAGGAACCAGGCATGAAGAAGAGAGACTAAAAGTGGAAGGAATTGGAAAAGAATTAAGGCAAGCAGCAGCAAAGCAAGTGCAGCAACCAAGTACAGCTCCTGCCTCACCGCCTTCAGCTTCCTCCTCTCCCTCTCATGATTTTTCCTTCACAATCTCTCTCCACTCTTCTTCCACATCAATCCCTGATCATCATAACAAGGCCAAATCCACCCCACCTTCTTTTGCTATTGATTTGTCCCCTGCAGATGACATTTTCTTCCATGGCCACTTGCTTCCTCTCCAATTGCTCTCTCACCTTCCTGTCTCTCCTCGCTCATCAACCAACTCCCTGGACAGCTTCACTCTTCCCATCAAAGACTTATCAGATGATGATCAGAGACCAACCAAAGAAAGCAACAACAATGCTAACAACTGCAGCACCAGCATTGGCAGGAACAAGAATATCATCAACAACAAGAACAACAGCTGCCGCAGCATAAACCAGATAAGCCCACATCACAGCAACAAAAGTGAGGCAAGGGGAAGAACAAAGTCCAAGTCTTTCTCATTATTCGGGTTACCAAAATGGCGAAAAGATTGTGAAGACAGAGAAAAAGAAGACAAGGAGATGAAGCACAAGAGGAAGATGAGGTTTGATGTGAGCCATATACTAAAGAGGTATGTGAGAATGGTCAGGCCACTATTGTTATTCAGAGGAAGAAAAGAGAAGGGCCAATTCCGGAGGCAACCTTATTCGTTTTCGGGCAATCTAAGCTTGAGAAATAAGCATGAGCTGAGAGGAAGGAGAGGAGAGCTTTCAGCCCCAGCATCAATGAGAACATCTCCAACAAATAGTGGCCTTCTTGTTGCAACATCAGCAACTAATCTTCCTTCTTCCACCATTGACAGCACCATGGAAGAGTTGCAGGCAGCAATTCAAGCTGCAATTGCTCATTGCAAGAATTCCATTGCCAGTGCCACAGAAGAGAAGATCAAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

37.91

Weight (kDa)

9.9

Isoelectric Point (pI)

58.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42750
fragaria_vesca	FvH4_2g34560
malus_domestica	MD08G1102600.v1.1 MD15G1084100.v1.1
prunus_persica	Prupe.1G437500_v2.0.a1
pyrus_communis	pycom08g08410 pycom15g07930
rosa_chinensis	RchiOBHm_Chr6g0307601 RchiOBHm_Chr6g0307761
rosa_laevigata	RLG00000010702
rosa_multiflora	Rmu_co8485591.1_g000001 Rmu_sc0000031.1_g000029
rosa_roxburghii	Rroxscaffold_7G00160910
rosa_rugosa	Rorug06G0360600
rosa_samantha	Rh6AG469700 Rh6BG480200 Rh6CG485900 Rh6DG472400
rosa_wichuraiana	Rw6G041010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccIII	TCCGGA	1 cut(s)	759
AciI	CCGC	2 cut(s)	149, 511
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	982
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	959
AjnI	CCWGG	2 cut(s)	47, 369
AluBI	AGCT	9 cut(s)	38, 137, 158, 378, 507, 795, 814, 835, 962
AluI	AGCT	9 cut(s)	38, 137, 158, 378, 507, 795, 814, 835, 962
Alw26I	GTCTC	3 cut(s)	58, 349, 412
AlwNI	CAGNNNCTG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	759
AoxI	GGCC	5 cut(s)	240, 304, 716, 751, 877
ApeKI	GCWGC	8 cut(s)	104, 107, 121, 456, 507, 513, 950, 962
ApoI	RAATTY	1 cut(s)	982
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
AspS9I	GGNCC	1 cut(s)	751
AsuHPI	GGTGA	2 cut(s)	138, 326
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	630, 645
BbvI	GCAGC	8 cut(s)	116, 119, 133, 468, 494, 525, 949, 962
BccI	CCATC	2 cut(s)	18, 398
BciT130I	CCWGG	2 cut(s)	49, 371
BclI	TGATCA	2 cut(s)	226, 412
BcoDI	GTCTC	3 cut(s)	58, 349, 412
BfmI	CTRYAG	3 cut(s)	39, 282, 454
BisI	GCNGC	9 cut(s)	105, 108, 122, 457, 508, 511, 514, 951, 963
BlsI	GCNGC	9 cut(s)	106, 109, 123, 458, 509, 512, 515, 952, 964
Bme1390I	CCNGG	2 cut(s)	49, 371
BmgT120I	GGNCC	1 cut(s)	751
BmiI	GGNNCC	2 cut(s)	7, 46
BmrFI	CCNGG	2 cut(s)	49, 371
BmsI	GCATC	1 cut(s)	857
BpiI	GAAGAC	2 cut(s)	630, 645
BplI	GAGNNNNNCTC	2 cut(s)	847, 879
BpuEI	CTTGAG	1 cut(s)	817
BsaBI	GATNNNNATC	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	301, 369, 933
BsaWI	WCCGGW	1 cut(s)	759
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	993
Bse3DI	GCAATG	2 cut(s)	973, 987
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	759
BseBI	CCWGG	2 cut(s)	49, 371
BseDI	CCNNGG	3 cut(s)	301, 369, 933
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	2 cut(s)	973, 987
BseMII	CTCAG	1 cut(s)	806
BseNI	ACTGG	1 cut(s)	993
BseRI	GAGGAG	3 cut(s)	154, 339, 843
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	8 cut(s)	116, 119, 133, 468, 494, 525, 949, 962
BseYI	CCCAGC	1 cut(s)	844
BsgI	GTGCAG	1 cut(s)	140
BshFI	GGCC	5 cut(s)	242, 306, 718, 753, 879
BshNI	GGYRCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	760
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	3 cut(s)	58, 349, 412
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	5 cut(s)	242, 306, 718, 753, 879
Bso31I	GGTCTC	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	759
Bsp143I	GATC	3 cut(s)	226, 412, 1011
Bsp19I	CCATGG	2 cut(s)	301, 933
BspACI	CCGC	2 cut(s)	149, 511
BspANI	GGCC	5 cut(s)	242, 306, 718, 753, 879
BspCNI	CTCAG	1 cut(s)	807
BspEI	TCCGGA	1 cut(s)	759
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	7, 46
BspMAI	CTGCAG	2 cut(s)	286, 458
BspT107I	GGYRCC	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	412
BsrDI	GCAATG	2 cut(s)	973, 987
BsrI	ACTGG	1 cut(s)	993
BssECI	CCNNGG	3 cut(s)	301, 369, 933
BssMI	GATC	3 cut(s)	226, 412, 1011
BssT1I	CCWWGG	2 cut(s)	301, 933
Bst2UI	CCWGG	2 cut(s)	49, 371
Bst6I	CTCTTC	5 cut(s)	54, 211, 390, 933, 999
BstC8I	GCNNGC	2 cut(s)	102, 948
BstDEI	CTNAG	2 cut(s)	791, 815
BstDSI	CCRYGG	2 cut(s)	301, 933
BstEII	GGTNACC	1 cut(s)	597
BstKTI	GATC	3 cut(s)	229, 415, 1014
BstMAI	GTCTC	3 cut(s)	58, 349, 412
BstMBI	GATC	3 cut(s)	226, 412, 1011
BstMWI	GCNNNNNNNGC	7 cut(s)	121, 462, 513, 792, 896, 959, 968
BstNI	CCWGG	2 cut(s)	49, 371
BstPI	GGTNACC	1 cut(s)	597
BstSCI	CCNGG	2 cut(s)	47, 369
BstSFI	CTRYAG	3 cut(s)	39, 282, 454
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	8 cut(s)	116, 119, 133, 468, 494, 525, 949, 962
BstV2I	GAAGAC	2 cut(s)	630, 645
BstXI	CCANNNNNNTGG	1 cut(s)	370
BsuRI	GGCC	5 cut(s)	242, 306, 718, 753, 879
BtgI	CCRYGG	2 cut(s)	301, 933
BtsIMutI	CAGTG	1 cut(s)	1000
Cac8I	GCNNGC	2 cut(s)	102, 948
CaiI	CAGNNNCTG	1 cut(s)	140
CciI	TCATGA	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	751
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	5 cut(s)	53, 176, 302, 809, 934
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	2 cut(s)	791, 815
DpnI	GATC	3 cut(s)	228, 414, 1013
DpnII	GATC	3 cut(s)	226, 412, 1011
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	5 cut(s)	54, 211, 390, 933, 999
EarI	CTCTTC	5 cut(s)	54, 211, 390, 933, 999
Eco130I	CCWWGG	2 cut(s)	301, 933
Eco31I	GGTCTC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	138
Eco91I	GGTNACC	1 cut(s)	597
EcoO65I	GGTNACC	1 cut(s)	597
EcoRI	GAATTC	1 cut(s)	982
EcoRII	CCWGG	2 cut(s)	47, 369
EcoT14I	CCWWGG	2 cut(s)	301, 933
ErhI	CCWWGG	2 cut(s)	301, 933
FaeI	CATG	5 cut(s)	56, 179, 305, 812, 937
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	5 cut(s)	52, 175, 301, 808, 933
FbaI	TGATCA	2 cut(s)	226, 412
Fnu4HI	GCNGC	9 cut(s)	105, 108, 122, 457, 508, 511, 514, 951, 963
Fsp4HI	GCNGC	9 cut(s)	105, 108, 122, 457, 508, 511, 514, 951, 963
GluI	GCNGC	9 cut(s)	105, 108, 122, 457, 508, 511, 514, 951, 963
GsaI	CCCAGC	1 cut(s)	848
HaeIII	GGCC	5 cut(s)	242, 306, 718, 753, 879
HapII	CCGG	1 cut(s)	760
Hin1II	CATG	5 cut(s)	56, 179, 305, 812, 937
HindIII	AAGCTT	1 cut(s)	793
HpaII	CCGG	1 cut(s)	760
HphI	GGTGA	2 cut(s)	138, 326
Hpy188I	TCNGA	3 cut(s)	406, 417, 734
Hpy188III	TCNNGA	2 cut(s)	176, 760
HpyAV	CCTTC	9 cut(s)	71, 162, 196, 267, 347, 742, 816, 890, 921
HpyCH4V	TGCA	7 cut(s)	121, 284, 456, 890, 946, 965, 978
HpyF10VI	GCNNNNNNNGC	7 cut(s)	121, 462, 513, 792, 896, 959, 968
HpyF3I	CTNAG	2 cut(s)	791, 815
Hsp92II	CATG	5 cut(s)	56, 179, 305, 812, 937
Kpn2I	TCCGGA	1 cut(s)	759
Ksp22I	TGATCA	2 cut(s)	226, 412
Kzo9I	GATC	3 cut(s)	226, 412, 1011
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	8 cut(s)	116, 119, 133, 468, 494, 525, 949, 962
LweI	GCATC	1 cut(s)	857
MaeIII	GTNAC	1 cut(s)	597
MalI	GATC	3 cut(s)	228, 414, 1013
MboI	GATC	3 cut(s)	226, 412, 1011
MfeI	CAATTG	2 cut(s)	323, 966
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	7 cut(s)	81, 92, 323, 755, 954, 966, 982
MluNI	TGGCCA	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	890
Mox20I	TGGCCA	1 cut(s)	306
MroI	TCCGGA	1 cut(s)	759
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	507
MspI	CCGG	1 cut(s)	760
MspR9I	CCNGG	2 cut(s)	49, 371
MunI	CAATTG	2 cut(s)	323, 966
MvaI	CCWGG	2 cut(s)	49, 371
MwoI	GCNNNNNNNGC	7 cut(s)	121, 462, 513, 792, 896, 959, 968
NcoI	CCATGG	2 cut(s)	301, 933
NdeII	GATC	3 cut(s)	226, 412, 1011
NlaIII	CATG	5 cut(s)	56, 179, 305, 812, 937
NlaIV	GGNNCC	2 cut(s)	7, 46
PagI	TCATGA	1 cut(s)	175
PkrI	GCNGC	9 cut(s)	106, 109, 123, 458, 509, 512, 515, 952, 964
Psp6I	CCWGG	2 cut(s)	47, 369
PspEI	GGTNACC	1 cut(s)	597
PspFI	CCCAGC	1 cut(s)	844
PspGI	CCWGG	2 cut(s)	47, 369
PspN4I	GGNNCC	2 cut(s)	7, 46
PspPI	GGNCC	1 cut(s)	751
PstI	CTGCAG	2 cut(s)	286, 458
PstNI	CAGNNNCTG	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	507
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	9 cut(s)	105, 108, 122, 457, 508, 511, 514, 951, 963
Sau3AI	GATC	3 cut(s)	226, 412, 1011
Sau96I	GGNCC	1 cut(s)	751
ScrFI	CCNGG	2 cut(s)	49, 371
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	857
SfcI	CTRYAG	3 cut(s)	39, 282, 454
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
Sse9I	AATT	7 cut(s)	81, 92, 323, 755, 954, 966, 982
SsiI	CCGC	2 cut(s)	149, 511
StyD4I	CCNGG	2 cut(s)	47, 369
StyI	CCWWGG	2 cut(s)	301, 933
TasI	AATT	7 cut(s)	81, 92, 323, 755, 954, 966, 982
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	1 cut(s)	513
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	1 cut(s)	1000
TseI	GCWGC	8 cut(s)	104, 107, 121, 456, 507, 513, 950, 962
TspDTI	ATGAA	2 cut(s)	69, 665
TspRI	CASTG	1 cut(s)	1000
XapI	RAATTY	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.