AT5G42890

SCP-2 sterol transfer family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006885
Physical Location & Seq
Reverse (-)
17194170 .. 17196093
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42890.1

Sequence Viewer

Length: 372 bp
ATGGCGAATACCCAACTCAAATCCGATGCAATCATGGACATGATGAAGGAACATCTTTCCACCGACGCCGGGAAAGAGGTCACAGAGAAGATCGGTCTTGTTTATCAGATCAACATTGCTCCAAAGAAATTAGGGTTTGAAGAGGTTACTTACATCGTTGATCTGAAGAAAGGCGAAGTCACCAAAGGGAAATATGAAGGAGGGAAAGTGGATGCTACGTTCTCCTTCAAGGATGATGATTTTGTCAAAGTTGCCACTGGAAAGATGAATCCTCAGATGGCTTTCATTAGGGGTGCGATGAAGATCAAGGGTAGTCTCAGTGCTGCGCAGAAATTCACCCCTGACATCTTCCCTAAACCTTCAAAGTTGTGA

Protein Analysis

123

Amino Acids

13.57

Weight (kDa)

9.2

Isoelectric Point (pI)

4.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCP2 PF02036 18 - 113 2.5e-18 SCP-2 sterol transfer family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 327
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 3 cut(s) 140, 229, 363
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
Alw26I GTCTC 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 332
AspLEI GCGC 1 cut(s) 328
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 172, 328
BbvI GCAGC 1 cut(s) 310
BccI CCATC 1 cut(s) 271
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 320
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 2 cut(s) 16, 202
BpuMI CCSGG 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 66
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 302
BseGI GGATG 2 cut(s) 217, 238
BseJI GATNNNNATC 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 287, 331
BseNI ACTGG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 310
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 320
Bsp143I GATC 4 cut(s) 90, 108, 160, 303
BspCNI CTCAG 2 cut(s) 286, 330
BsrDI GCAATG 1 cut(s) 114
BsrI ACTGG 1 cut(s) 262
BssMI GATC 4 cut(s) 90, 108, 160, 303
BssNI GRCGYC 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 135
BstACI GRCGYC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 273, 317
BstF5I GGATG 2 cut(s) 217, 238
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 4 cut(s) 93, 111, 163, 306
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 4 cut(s) 90, 108, 160, 303
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 310
BtgZI GCGATG 1 cut(s) 311
BtsCI GGATG 2 cut(s) 217, 238
BtsIMutI CAGTG 2 cut(s) 255, 325
CfoI GCGC 1 cut(s) 328
CseI GACGC 1 cut(s) 74
CviAII CATG 2 cut(s) 34, 40
CviJI RGCY 1 cut(s) 281
CviKI_1 RGCY 1 cut(s) 281
DdeI CTNAG 2 cut(s) 273, 317
DpnI GATC 4 cut(s) 92, 110, 162, 305
DpnII GATC 4 cut(s) 90, 108, 160, 303
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 185
FaeI CATG 2 cut(s) 37, 43
FaiI YATR 3 cut(s) 35, 41, 195
FatI CATG 2 cut(s) 33, 39
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 2 cut(s) 224, 245
Fsp4HI GCNGC 1 cut(s) 324
FspI TGCGCA 1 cut(s) 327
GlaI GCGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 324
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 328
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 2 cut(s) 37, 43
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HinfI GANTC 1 cut(s) 268
HpaII CCGG 1 cut(s) 69
HphI GGTGA 2 cut(s) 172, 328
Hpy188I TCNGA 4 cut(s) 25, 108, 165, 276
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 4 cut(s) 40, 191, 235, 369
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 273, 317
HpySE526I ACGT 1 cut(s) 218
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 2 cut(s) 37, 43
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 4 cut(s) 90, 108, 160, 303
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 3 cut(s) 82, 243, 354
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 2 cut(s) 16, 202
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 3 cut(s) 79, 145, 178
MalI GATC 4 cut(s) 92, 110, 162, 305
MboI GATC 4 cut(s) 90, 108, 160, 303
MboII GAAGA 5 cut(s) 100, 152, 178, 313, 340
MluCI AATT 2 cut(s) 128, 332
MnlI CCTC 4 cut(s) 70, 136, 194, 282
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 70
NciI CCSGG 1 cut(s) 70
NdeII GATC 4 cut(s) 90, 108, 160, 303
NlaIII CATG 2 cut(s) 37, 43
NmuCI GTSAC 2 cut(s) 79, 178
NsbI TGCGCA 1 cut(s) 327
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 4 cut(s) 90, 108, 160, 303
ScrFI CCNGG 1 cut(s) 70
SetI ASST 4 cut(s) 81, 147, 221, 361
SfaNI GCATC 2 cut(s) 16, 202
SgeI CNNG 9 cut(s) 46, 52, 81, 82, 110, 241, 270, 319, 353
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 2 cut(s) 128, 332
StyD4I CCNGG 1 cut(s) 68
TaiI ACGT 1 cut(s) 221
TaqII GACCGA 1 cut(s) 83
TasI AATT 2 cut(s) 128, 332
TfiI GAWTC 1 cut(s) 268
TscAI CASTG 2 cut(s) 262, 325
TseFI GTSAC 2 cut(s) 79, 178
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 2 cut(s) 79, 178
TspDTI ATGAA 5 cut(s) 59, 210, 274, 281, 314
TspRI CASTG 2 cut(s) 262, 325
XapI RAATTY 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.