RchiOBHm_Chr6g0307931

Non-specific lipid-transfer protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006885
Physical Location & Seq
Reverse (-)
66096289 .. 66097477
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27685

Sequence Viewer

Length: 375 bp
ATGGGGAGCAACGACGAGCTCAAGTCGGAGGCTTTGCTGGAGCTGATGAAGCAGCACCTCAACACCGACGCCGGAAAAGCCATCGTCGAGAAGATCGGTCTCGTTTATCAGATCAACATCGCACCCCAGAAAATTGGGTTCAATGAGGTGATTTATACCATTGATTTTAAGAAAGGGGAGGTCAAGAAAGGGGCGTATGAAGGAGGAAAGGCGGATGCGATATTTTCGTTCAAGGACGAGGATTTCGTGAAGATTGCGCTGGGGAAGATGAATCCGCAGATTGCTTTCATGAGGGGCGCCATGAAGATTAAGGGCAGCTTGAGCGCGGCCACCAAATTCACACCTGACATATTCCCCAAGCCTTCCAAGATGTGA

Protein Analysis

124

Amino Acids

13.65

Weight (kDa)

9.22

Isoelectric Point (pI)

11.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCP2 PF02036 16 - 114 7.7e-18 SCP-2 sterol transfer family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AccII CGCG 1 cut(s) 326
AciI CCGC 3 cut(s) 212, 275, 326
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 335
AcyI GRCGYC 2 cut(s) 69, 297
AgsI TTSAA 2 cut(s) 142, 232
AluBI AGCT 3 cut(s) 19, 43, 318
AluI AGCT 3 cut(s) 19, 43, 318
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 2 cut(s) 52, 315
ApoI RAATTY 1 cut(s) 335
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AspLEI GCGC 3 cut(s) 259, 299, 326
AsuHPI GGTGA 1 cut(s) 160
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 64, 327
BccI CCATC 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 300
BisI GCNGC 3 cut(s) 53, 316, 327
BlsI GCNGC 3 cut(s) 54, 317, 328
BmiI GGNNCC 1 cut(s) 298
BmsI GCATC 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 59
BpuEI CTTGAG 2 cut(s) 5, 340
BsaBI GATNNNNATC 1 cut(s) 116
BsaHI GRCGYC 2 cut(s) 69, 297
BsaI GGTCTC 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 116
BseGI GGATG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 116
BseXI GCAGC 2 cut(s) 64, 327
BseYI CCCAGC 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 1 cut(s) 329
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 1 cut(s) 329
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 93, 111
BspACI CCGC 3 cut(s) 212, 275, 326
BspANI GGCC 1 cut(s) 329
BspFNI CGCG 1 cut(s) 326
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 104
BssMI GATC 2 cut(s) 93, 111
BssNI GRCGYC 2 cut(s) 69, 297
BstACI GRCGYC 2 cut(s) 69, 297
BstF5I GGATG 1 cut(s) 220
BstFNI CGCG 1 cut(s) 326
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 3 cut(s) 259, 299, 326
BstKTI GATC 2 cut(s) 96, 114
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 2 cut(s) 93, 111
BstMWI GCNNNNNNNGC 3 cut(s) 49, 77, 321
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 2 cut(s) 64, 327
BstXI CCANNNNNNTGG 1 cut(s) 134
BsuRI GGCC 1 cut(s) 329
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 220
CciI TCATGA 1 cut(s) 288
CfoI GCGC 3 cut(s) 259, 299, 326
CseI GACGC 1 cut(s) 77
CviAII CATG 2 cut(s) 289, 301
CviJI RGCY 7 cut(s) 19, 32, 43, 80, 318, 329, 361
CviKI_1 RGCY 7 cut(s) 19, 32, 43, 80, 318, 329, 361
DinI GGCGCC 1 cut(s) 298
DpnI GATC 2 cut(s) 95, 113
DpnII GATC 2 cut(s) 93, 111
EaeI YGGCCR 1 cut(s) 327
EciI GGCGGA 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 104
Eco53kI GAGCTC 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 21
EgeI GGCGCC 1 cut(s) 298
EheI GGCGCC 1 cut(s) 298
FaeI CATG 2 cut(s) 292, 304
FaiI YATR 5 cut(s) 156, 198, 290, 302, 350
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FatI CATG 2 cut(s) 288, 300
Fnu4HI GCNGC 3 cut(s) 53, 316, 327
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 3 cut(s) 53, 316, 327
GlaI GCGC 3 cut(s) 258, 298, 325
GluI GCNGC 3 cut(s) 53, 316, 327
GsaI CCCAGC 1 cut(s) 263
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 1 cut(s) 329
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 77
HhaI GCGC 3 cut(s) 259, 299, 326
Hin1I GRCGYC 2 cut(s) 69, 297
Hin1II CATG 2 cut(s) 292, 304
Hin6I GCGC 3 cut(s) 257, 297, 324
HinP1I GCGC 3 cut(s) 257, 297, 324
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 28, 111
Hpy188III TCNNGA 4 cut(s) 88, 184, 247, 289
Hpy99I CGWCG 3 cut(s) 17, 71, 89
HpyAV CCTTC 2 cut(s) 194, 372
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 77, 321
Hsp92I GRCGYC 2 cut(s) 69, 297
Hsp92II CATG 2 cut(s) 292, 304
HspAI GCGC 3 cut(s) 257, 297, 324
KasI GGCGCC 1 cut(s) 296
Kzo9I GATC 2 cut(s) 93, 111
LmnI GCTCC 2 cut(s) 6, 40
LpnPI CCDG 5 cut(s) 23, 85, 140, 245, 357
Lsp1109I GCAGC 2 cut(s) 64, 327
LweI GCATC 1 cut(s) 205
MalI GATC 2 cut(s) 95, 113
MboI GATC 2 cut(s) 93, 111
MboII GAAGA 4 cut(s) 103, 262, 277, 316
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 2 cut(s) 132, 335
Mly113I GGCGCC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 7 cut(s) 22, 68, 139, 172, 197, 232, 285
MseI TTAA 2 cut(s) 168, 309
MspI CCGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 49, 77, 321
NarI GGCGCC 1 cut(s) 297
NdeII GATC 2 cut(s) 93, 111
NlaIII CATG 2 cut(s) 292, 304
NlaIV GGNNCC 1 cut(s) 298
PagI TCATGA 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 3 cut(s) 54, 317, 328
PluTI GGCGCC 1 cut(s) 300
Psp124BI GAGCTC 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 298
SacI GAGCTC 1 cut(s) 21
SaqAI TTAA 2 cut(s) 168, 309
SatI GCNGC 3 cut(s) 53, 316, 327
Sau3AI GATC 2 cut(s) 93, 111
SduI GDGCHC 1 cut(s) 21
SetI ASST 7 cut(s) 21, 45, 60, 150, 183, 320, 346
SfaNI GCATC 1 cut(s) 205
SfoI GGCGCC 1 cut(s) 298
SmlI CTYRAG 2 cut(s) 20, 319
SmoI CTYRAG 2 cut(s) 20, 319
Sse9I AATT 2 cut(s) 132, 335
SsiI CCGC 3 cut(s) 212, 275, 326
SspDI GGCGCC 1 cut(s) 296
SstI GAGCTC 1 cut(s) 21
TaqI TCGA 1 cut(s) 87
TaqII GACCGA 1 cut(s) 86
TasI AATT 2 cut(s) 132, 335
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 168, 309
Tru9I TTAA 2 cut(s) 168, 309
TseI GCWGC 2 cut(s) 52, 315
TspDTI ATGAA 5 cut(s) 62, 213, 277, 284, 317
XapI RAATTY 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.