Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006885

Physical Location & Seq

Genomic Coordinates Forward (+)

37190344 .. 37191658

Gene Structure 1315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G435500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGGAGCAGCAATCAGCTGAAGTCGGAGAGCTTGCTGGAGCTGATGAAAGAGCACTTGACCACTGATGCCGGCAAACAAATCACAAAGAAGATCGGCCTCGTCTATCAGATCAACATTGCCCCCAAGAAAATTGGGTTTGATGAGGTGATTTTCACCGTTGATCTCAAGAAGGGGGAGGTCAAGAAAGGGCCATATGAAGGAGGGAAGCCAGATGCAACTTTTTCCTTCAAGGATGATGATTTTGTGAAGGTTGCGCTGGGCAAGATGAACCCACAAGTTGCTTTCATGAGGGGTGCCATGAAGATCAAGGGCAGTCTGAGTGCAGCCACAAAATTTACTCCTGACATATTCCCCAAGCCTGCCAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0019752 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0032502 GO:0032787 GO:0035556 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCP2

Protein Analysis

125

Amino Acids

13.6

Weight (kDa)

9.57

Isoelectric Point (pI)

13.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42890
fragaria_vesca	FvH4_2g34440 FvH4_2g34441
malus_domestica	MD00G1215600.v1.1 MD08G1101600.v1.1 MD15G1083000.v1.1
prunus_persica	Prupe.1G435500_v2.0.a1
pyrus_communis	pycom08g08210
rosa_chinensis	RchiOBHm_Chr5g0032801 RchiOBHm_Chr6g0307931
rosa_laevigata	RLG00000010686 RLG00000033429
rosa_multiflora	Rmu_sc0003252.1_g000020
rosa_roxburghii	Rroxscaffold_2G00127110 Rroxscaffold_7G00160760
rosa_rugosa	Rorug06G0361700 Rorug06G0361800 Rorug06G0361900
rosa_samantha	Rh5CG255500 Rh6AG470800 Rh6BG481800 Rh6CG487200 Rh6DG473300 Rh7DG462100
rosa_wichuraiana	Rw5G020780 Rw6G041110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	3 cut(s)	19, 33, 43
AluI	AGCT	3 cut(s)	19, 33, 43
Alw21I	GWGCWC	1 cut(s)	57
AoxI	GGCC	2 cut(s)	97, 191
ApeKI	GCWGC	2 cut(s)	9, 326
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	148, 160
BanI	GGYRCC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	21, 338
BisI	GCNGC	2 cut(s)	10, 327
BlsI	GCNGC	2 cut(s)	11, 328
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	298
BmsI	GCATC	2 cut(s)	58, 205
BpmI	CTGGAG	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	21, 338
BseYI	CCCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	99, 193
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	200
BsnI	GGCC	2 cut(s)	99, 193
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	93, 111, 163, 306
BspANI	GGCC	2 cut(s)	99, 193
BspCNI	CTCAG	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	4 cut(s)	93, 111, 163, 306
Bst4CI	ACNGT	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	35, 73, 363
BstDEI	CTNAG	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	4 cut(s)	96, 114, 166, 309
BstMBI	GATC	4 cut(s)	93, 111, 163, 306
BstV1I	GCAGC	2 cut(s)	21, 338
BsuRI	GGCC	2 cut(s)	99, 193
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	3 cut(s)	35, 73, 363
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	191
CviAII	CATG	2 cut(s)	289, 301
CviJI	RGCY	8 cut(s)	19, 33, 43, 99, 193, 211, 329, 361
CviKI_1	RGCY	8 cut(s)	19, 33, 43, 99, 193, 211, 329, 361
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	4 cut(s)	95, 113, 165, 308
DpnII	GATC	4 cut(s)	93, 111, 163, 306
Eco57I	CTGAAG	1 cut(s)	41
FaeI	CATG	2 cut(s)	292, 304
FaiI	YATR	5 cut(s)	196, 198, 290, 302, 350
FatI	CATG	2 cut(s)	288, 300
FauNDI	CATATG	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	10, 327
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	10, 327
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	2 cut(s)	10, 327
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	99, 193
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	292, 304
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	148, 160
Hpy188I	TCNGA	3 cut(s)	28, 111, 321
Hpy188III	TCNNGA	4 cut(s)	169, 184, 289, 344
HpyAV	CCTTC	4 cut(s)	166, 194, 238, 244
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	218, 326
HpyF3I	CTNAG	1 cut(s)	320
Hsp92II	CATG	2 cut(s)	292, 304
HspAI	GCGC	1 cut(s)	257
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	93, 111, 163, 306
LmnI	GCTCC	2 cut(s)	6, 40
LpnPI	CCDG	5 cut(s)	23, 85, 225, 245, 357
Lsp1109I	GCAGC	2 cut(s)	21, 338
LweI	GCATC	2 cut(s)	58, 205
MalI	GATC	4 cut(s)	95, 113, 165, 308
MboI	GATC	4 cut(s)	93, 111, 163, 306
MboII	GAAGA	2 cut(s)	103, 316
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	2 cut(s)	132, 335
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	5 cut(s)	110, 139, 172, 197, 285
MroNI	GCCGGC	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	1 cut(s)	72
NaeI	GCCGGC	1 cut(s)	73
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	4 cut(s)	93, 111, 163, 306
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	2 cut(s)	292, 304
NlaIV	GGNNCC	1 cut(s)	298
PagI	TCATGA	1 cut(s)	288
PdiI	GCCGGC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	11, 328
PspFI	CCCAGC	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	19
SatI	GCNGC	2 cut(s)	10, 327
Sau3AI	GATC	4 cut(s)	93, 111, 163, 306
Sau96I	GGNCC	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	6 cut(s)	21, 35, 45, 150, 183, 255
SfaNI	GCATC	2 cut(s)	58, 205
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	132, 335
TaaI	ACNGT	1 cut(s)	160
TasI	AATT	2 cut(s)	132, 335
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	2 cut(s)	9, 326
TspDTI	ATGAA	5 cut(s)	62, 213, 277, 284, 317
TspRI	CASTG	1 cut(s)	70
XapI	RAATTY	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.