Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006885

Physical Location & Seq

Genomic Coordinates Forward (+)

8544968 .. 8546428

Gene Structure 1461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1101600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGAGCGGTGCAGAGCTGAAGTCGGAAAGCTTGCTGGAGCTGATGAAAGAGCACCTGAAAACCGACGCCGGCAAAGAAATCACCAAGAAAATTGGACTCGTCTATCAGATAAACATCGCACCCAAGAAAATTGGATTCGATGAGGTGATTTTTACCGTTGATCTCAAGAAGGGCGAGGTAAAGAAAGGGGCATATGGAGGAGGGAAGCCAGATGCGACTTTCTCGTTCAAGGATGAAGATTTCGTGAAGGTGGCGCTGGGGAAGATGAACCCGCAAATCGCTTTCATGAGGGGGGCAATGAAGATCAAGGGCAGCCTGAGTGCCGCCACGAAATTCACACCCGACATTTTCCCCAAGCCTGCCAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0019752 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0032502 GO:0032787 GO:0035556 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCP2

Protein Analysis

125

Amino Acids

13.5

Weight (kDa)

9.55

Isoelectric Point (pI)

14.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCP2	PF02036	16 - 114	2.5e-18	SCP-2 sterol transfer family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42890
fragaria_vesca	FvH4_2g34440 FvH4_2g34441
malus_domestica	MD00G1215600.v1.1 MD08G1101600.v1.1 MD15G1083000.v1.1
prunus_persica	Prupe.1G435500_v2.0.a1
pyrus_communis	pycom08g08210
rosa_chinensis	RchiOBHm_Chr5g0032801 RchiOBHm_Chr6g0307931
rosa_laevigata	RLG00000010686 RLG00000033429
rosa_multiflora	Rmu_sc0003252.1_g000020
rosa_roxburghii	Rroxscaffold_2G00127110 Rroxscaffold_7G00160760
rosa_rugosa	Rorug06G0361700 Rorug06G0361800 Rorug06G0361900
rosa_samantha	Rh5CG255500 Rh6AG470800 Rh6BG481800 Rh6CG487200 Rh6DG473300 Rh7DG462100
rosa_wichuraiana	Rw5G020780 Rw6G041110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	9
AciI	CCGC	3 cut(s)	9, 275, 327
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	3 cut(s)	19, 33, 43
AluI	AGCT	3 cut(s)	19, 33, 43
Alw21I	GWGCWC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	259
AsuHPI	GGTGA	2 cut(s)	76, 160
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	260
BisI	GCNGC	2 cut(s)	316, 327
BlsI	GCNGC	2 cut(s)	317, 328
BmsI	GCATC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	69
Bse118I	RCCGGY	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	116
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	327
BseYI	CCCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	163, 306
BspACI	CCGC	3 cut(s)	9, 275, 327
BspCNI	CTCAG	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	288
BsrBI	CCGCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	2 cut(s)	163, 306
BssNI	GRCGYC	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	160
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	4 cut(s)	7, 35, 73, 363
BstDEI	CTNAG	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	2 cut(s)	166, 309
BstMBI	GATC	2 cut(s)	163, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	241
Cac8I	GCNNGC	4 cut(s)	7, 35, 73, 363
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	71
CseI	GACGC	1 cut(s)	77
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	6 cut(s)	19, 33, 43, 211, 318, 361
CviKI_1	RGCY	6 cut(s)	19, 33, 43, 211, 318, 361
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	2 cut(s)	165, 308
DpnII	GATC	2 cut(s)	163, 306
Eco57I	CTGAAG	1 cut(s)	41
FaeI	CATG	1 cut(s)	292
FaiI	YATR	3 cut(s)	196, 198, 290
FatI	CATG	1 cut(s)	288
FauI	CCCGC	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	316, 327
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	316, 327
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	2 cut(s)	316, 327
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	59
HaeII	RGCGCY	1 cut(s)	260
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	2 cut(s)	99, 138
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	76, 160
Hpy188I	TCNGA	2 cut(s)	28, 111
Hpy188III	TCNNGA	3 cut(s)	169, 247, 289
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	166, 244
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	320
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	257
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	163, 306
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	6 cut(s)	23, 71, 85, 225, 245, 332
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	1 cut(s)	205
MalI	GATC	2 cut(s)	165, 308
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	2 cut(s)	163, 306
MboII	GAAGA	3 cut(s)	251, 277, 316
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	3 cut(s)	93, 132, 335
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	5 cut(s)	139, 172, 194, 197, 285
MroNI	GCCGGC	1 cut(s)	71
MspI	CCGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	11
NaeI	GCCGGC	1 cut(s)	73
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	2 cut(s)	163, 306
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	292
PagI	TCATGA	1 cut(s)	288
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	317, 328
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	259
SatI	GCNGC	2 cut(s)	316, 327
Sau3AI	GATC	2 cut(s)	163, 306
SchI	GAGTC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	7 cut(s)	21, 35, 45, 60, 150, 183, 255
SfaNI	GCATC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	93, 132, 335
SsiI	CCGC	3 cut(s)	9, 275, 327
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	141
TasI	AATT	3 cut(s)	93, 132, 335
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	138
TseI	GCWGC	1 cut(s)	315
TspDTI	ATGAA	5 cut(s)	62, 252, 277, 284, 317
XapI	RAATTY	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.