Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006885

Physical Location & Seq

Genomic Coordinates Reverse (-)

51009617 .. 51011794

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0361800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2178 bp

ATGCGGTGGGGACTAACGTACAGGCATGCAGGCCCAATCTTCGTGTGGTCTTCCCCCGTCTGTATCAGAGGCAATGCCCGGCCTCCTATACCCTCCTTCATGGCTGTCATGTACTTGAACCGCATAGCTATAGCTCTCACCCACTGCCGCCGAGTCCAGGCCTTCAATCACGGCAAGGCATTTCACTCCCAGTTGATCAAACTCGGCATTTCCGCCGATGTTTTCCTCTCCAACAATCTGATTTCCATGTACGCGTCCTCGCCTCGTCTTATCGACGATGCACAGAAGCTGTTCGACGAAATGCCTCACAGAAACATTGTCACGTGGACCACCATGGTCTCTGCGTATACCAAGTGCGGGCGAGGTGGTGAGGCTGTAAGGCTATATGGGTTTATGGCGGAGTGGGGTTTGGAGAGGCCCAATGGGTTTATGTACTCTGCTGTGCTCAAGGCTTGTGGTTCGGTGGGTGACCTCGGATTGGGGAGGGTGATCCATGAGAGGATATCTAGAGCTGGGTTGGTGTTTGACACTGTTTTGATGAATACCCTTTTGGATATGTACGTGAAATGTGGGAGTTTGGGTGATGCCAAGAGGGTTTTTGATGGGATGTTGGATAGGAACTCGACGTCGTGGAACACGATGATTTCGGGGTATGGTAAGGCTGGTTTGATGGATGAGGCGGTGGGGCTGTTTCGTCGGATGCAAGAGCCGAATGCTGCATCGTGGAACAGTATTATTGCTGGTTTTGTGAATAATGGGAGCCCGCGTGCGTTGGAATTTGTGAGTATGATGCACCGAGAAGGCTTCAGGCTTGATTGTTATACTTTCCCATGTGCTTTTAAGACCTGTGCTTGCTATGGTTCATTAGCCTCTGGGAAGCAGATCCATTGTTATGTTATACAGTCCGGTTTTGAGTCTGATAGATTTACTTTGTCAGCACTGATTGATATGTATTCAAATTTCAATCAATTGGATGAAGCCATAAAGTTGTTTGGTCAGCACTCAAGGTGCAATGCTTCCATTAGTTTGGCACTTTGGAATTCCATGATTTCTGGATATGTCATTAATGAACATAATTGTGCAGCTCTGGGTTTAGTTTCAAAAGTCCATTGCTCAGGTGCACAGATGGATTCTTACACTTACAGTGGTGCTTTAAAGGCCTGCATCAACTTGCTTAACTTGAGACTTGGGCGTCAAGTGCATGGTTTGGTTGTCACCACAGGATATGAGTTGGATTATGTTGTTGGAAGCATTCTTACAGATCTGTATACAAGAGTGGGAAACATTAAGGATGCATTGGGGTTGTTTCACAGGCTTCCAATGAAAGACACTGTAGCCTGGTCTGGTTTGATCATAGGGTGTGCTAAAATGGGACTAAGCTGGTTAGCTTTTTCACTGTTTAGGGATATGGTGTATTTGGATATAGAAGTAGATCAATTTGTCACTTCATTTGTTCTGAAAGTTTGCTCCAGTTTAACATCTCTTGGAAGTGGCAAACAGGTTCATGCTTTCTGTGTTAAGAGTGGATATGAATCTGAGGGGGTTGTAGTGACATCACTGATTGATATGTACTCAAAATGTGGTGCTATTGAGAATGGGTTGGCTCTGTTTGATTCTGTGGCAGACAGAGACACTGTGTGTTGGACTGGAATAATTGTGGGGTGTGGGCAAAATGGAAGAGCTGATGAAGCAATTAAACTTTTCAATAAGATGATAGAATCAGGGTTGAAGCCGAACGAAATTACATATCTAGGAGTTCTTTCTGCCTGCAGGCATGCTGGTTTTGTTAAAAATGCAAGGACCATCTTTAATTCTATGAAAAAAGAGCATGGACTAGAACCTGGTGTAGAGCATTACTATTGCATGGTTGACATTCTTGGTCAAGCTGGATGTTTTAAAGAGGCTTTAGATTTCATTGCTAAGTTGCCATTTGAACCCAACCAAATCATATGGAGATCATTACTTGGAGCCTGTGGAACTCATAAAAACACTGAACTAGTAAATATCGTTGCTGATCGCCTTCTTGCAACTTCACCAGAAGACCCTTCCACATATGTGACACTTTCAAATGTTTATGCAGAATTGGGAATGTGGGTTGATTTAAGCAAAGTTAGAACAGCTGTCAAGAAAGTGGGTGCAAAAAAAGAAGGAAAGAGCTGGATTGAGATTTCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0019752 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0032502 GO:0032787 GO:0035556 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCP2

Protein Analysis

725

Amino Acids

79.98

Weight (kDa)

8.53

Isoelectric Point (pI)

29.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	104 - 152	1e-07	PPR repeat family
PPR	PF01535	107 - 137	9.5e-06	PPR repeat
PPR_1	PF12854	206 - 235	1.1e-07	PPR repeat
PPR_2	PF13041	207 - 235	4.1e-06	PPR repeat family
PPR	PF01535	210 - 236	9.1e-10	PPR repeat
PPR_2	PF13041	543 - 590	8.9e-12	PPR repeat family
PPR	PF01535	546 - 576	2.7e-07	PPR repeat
E_motif	PF20431	661 - 722	1.7e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42890
fragaria_vesca	FvH4_2g34440 FvH4_2g34441
malus_domestica	MD00G1215600.v1.1 MD08G1101600.v1.1 MD15G1083000.v1.1
prunus_persica	Prupe.1G435500_v2.0.a1
pyrus_communis	pycom08g08210
rosa_chinensis	RchiOBHm_Chr5g0032801 RchiOBHm_Chr6g0307931
rosa_laevigata	RLG00000010686 RLG00000033429
rosa_multiflora	Rmu_sc0003252.1_g000020
rosa_roxburghii	Rroxscaffold_2G00127110 Rroxscaffold_7G00160760
rosa_rugosa	Rorug06G0361700 Rorug06G0361800 Rorug06G0361900
rosa_samantha	Rh5CG255500 Rh6AG470800 Rh6BG481800 Rh6CG487200 Rh6DG473300 Rh7DG462100
rosa_wichuraiana	Rw5G020780 Rw6G041110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1191
AatII	GACGTC	1 cut(s)	629
AccI	GTMKAC	2 cut(s)	347, 1268
AccII	CGCG	2 cut(s)	254, 766
AciI	CCGC	8 cut(s)	4, 121, 148, 213, 357, 398, 680, 764
AclWI	GGATC	2 cut(s)	484, 877
AcsI	RAATTY	3 cut(s)	776, 958, 1039
AcuI	CTGAAG	1 cut(s)	790
AcvI	CACGTG	1 cut(s)	324
AcyI	GRCGYC	2 cut(s)	626, 1192
AdeI	CACNNNGTG	1 cut(s)	1638
AfaI	GTAC	6 cut(s)	20, 113, 251, 434, 560, 1571
AfiI	CCNNNNNNNGG	3 cut(s)	157, 357, 478
AflIII	ACRYGT	1 cut(s)	252
AhlI	ACTAGT	1 cut(s)	1996
AjnI	CCWGG	3 cut(s)	156, 1337, 1840
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AleI	CACNNNNGTG	1 cut(s)	2054
Alw21I	GWGCWC	2 cut(s)	447, 1123
Alw26I	GTCTC	3 cut(s)	343, 1177, 1623
Alw44I	GTGCAC	1 cut(s)	1119
AlwI	GGATC	2 cut(s)	484, 877
AlwNI	CAGNNNCTG	1 cut(s)	289
AoxI	GGCC	5 cut(s)	31, 80, 159, 416, 1158
ApaLI	GTGCAC	1 cut(s)	1119
ApeKI	GCWGC	2 cut(s)	716, 1082
ApoI	RAATTY	3 cut(s)	776, 958, 1039
AseI	ATTAAT	1 cut(s)	1065
Asp700I	GAANNNNTTC	1 cut(s)	290
AspS9I	GGNCC	4 cut(s)	32, 327, 417, 1800
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	7 cut(s)	130, 380, 479, 499, 593, 1207, 2025
AvaII	GGWCC	2 cut(s)	327, 1800
BaeGI	GKGCMC	1 cut(s)	1123
BanII	GRGCYC	1 cut(s)	764
BarI	GAAGNNNNNNTAC	2 cut(s)	1240, 1272
BbrPI	CACGTG	1 cut(s)	324
BbsI	GAAGAC	2 cut(s)	42, 2046
Bbv12I	GWGCWC	2 cut(s)	447, 1123
BbvI	GCAGC	2 cut(s)	703, 1094
BccI	CCATC	4 cut(s)	596, 664, 1120, 1811
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	3 cut(s)	158, 1339, 1842
BclI	TGATCA	2 cut(s)	195, 1350
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	3 cut(s)	343, 1177, 1623
BcuI	ACTAGT	1 cut(s)	1996
BfaI	CTAG	4 cut(s)	507, 1751, 1835, 1997
BfmI	CTRYAG	3 cut(s)	129, 1332, 1768
BglII	AGATCT	1 cut(s)	1261
BisI	GCNGC	3 cut(s)	148, 717, 1083
BlsI	GCNGC	3 cut(s)	149, 718, 1084
Bme1390I	CCNGG	4 cut(s)	79, 158, 1339, 1842
Bme18I	GGWCC	2 cut(s)	327, 1800
BmgT120I	GGNCC	4 cut(s)	32, 327, 417, 1800
BmiI	GGNNCC	2 cut(s)	761, 1969
BmrFI	CCNGG	4 cut(s)	79, 158, 1339, 1842
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	7 cut(s)	268, 574, 690, 728, 780, 1173, 1282
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	2 cut(s)	42, 2046
BpmI	CTGGAG	1 cut(s)	1453
Bpu10I	CCTNAGC	1 cut(s)	1114
BpuEI	CTTGAG	3 cut(s)	431, 988, 1201
BpuMI	CCSGG	1 cut(s)	79
BsaAI	YACGTR	2 cut(s)	324, 562
BsaBI	GATNNNNATC	1 cut(s)	1531
BsaHI	GRCGYC	2 cut(s)	626, 1192
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	333, 472
BsaWI	WCCGGW	1 cut(s)	905
BsaXI	ACNNNNNCTCC	4 cut(s)	565, 595, 751, 781
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 357, 478
Bse1I	ACTGG	3 cut(s)	190, 1470, 1651
Bse3DI	GCAATG	4 cut(s)	79, 1018, 1108, 1914
Bse8I	GATNNNNATC	1 cut(s)	1531
BseBI	CCWGG	3 cut(s)	158, 1339, 1842
BseDI	CCNNGG	2 cut(s)	333, 472
BseGI	GGATG	6 cut(s)	612, 679, 705, 979, 1297, 1895
BseJI	GATNNNNATC	1 cut(s)	1531
BseLI	CCNNNNNNNGG	3 cut(s)	157, 357, 478
BseMI	GCAATG	4 cut(s)	79, 1018, 1108, 1914
BseMII	CTCAG	2 cut(s)	1128, 1527
BseNI	ACTGG	3 cut(s)	190, 1470, 1651
BseSI	GKGCMC	1 cut(s)	1123
BseXI	GCAGC	2 cut(s)	703, 1094
BseYI	CCCAGC	1 cut(s)	512
BsgI	GTGCAG	1 cut(s)	1101
Bsh1236I	CGCG	2 cut(s)	254, 766
BshFI	GGCC	5 cut(s)	33, 82, 161, 418, 1160
BsiHKAI	GWGCWC	2 cut(s)	447, 1123
BsiSI	CCGG	2 cut(s)	79, 906
BslFI	GGGAC	2 cut(s)	24, 1386
BslI	CCNNNNNNNGG	3 cut(s)	157, 357, 478
BsmAI	GTCTC	3 cut(s)	343, 1177, 1623
BsmFI	GGGAC	2 cut(s)	24, 1386
BsmI	GAATGC	2 cut(s)	718, 1251
BsnI	GGCC	5 cut(s)	33, 82, 161, 418, 1160
Bso31I	GGTCTC	1 cut(s)	343
Bsp1286I	GDGCHC	3 cut(s)	447, 764, 1123
Bsp143I	GATC	8 cut(s)	195, 489, 882, 1261, 1350, 1432, 1955, 2014
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	8 cut(s)	4, 121, 148, 213, 357, 398, 680, 764
BspANI	GGCC	5 cut(s)	33, 82, 161, 418, 1160
BspCNI	CTCAG	2 cut(s)	1127, 1528
BspFNI	CGCG	2 cut(s)	254, 766
BspLI	GGNNCC	2 cut(s)	761, 1969
BspMAI	CTGCAG	1 cut(s)	1772
BspPI	GGATC	2 cut(s)	484, 877
BspQI	GCTCTTC	1 cut(s)	1672
BspTNI	GGTCTC	1 cut(s)	343
BsrDI	GCAATG	4 cut(s)	79, 1018, 1108, 1914
BsrI	ACTGG	3 cut(s)	190, 1470, 1651
BssECI	CCNNGG	2 cut(s)	333, 472
BssMI	GATC	8 cut(s)	195, 489, 882, 1261, 1350, 1432, 1955, 2014
BssNAI	GTATAC	2 cut(s)	348, 1269
BssNI	GRCGYC	2 cut(s)	626, 1192
BssT1I	CCWWGG	1 cut(s)	333
Bst1107I	GTATAC	2 cut(s)	348, 1269
Bst2UI	CCWGG	3 cut(s)	158, 1339, 1842
Bst4CI	ACNGT	7 cut(s)	532, 731, 903, 1145, 1333, 1398, 1636
Bst6I	CTCTTC	1 cut(s)	1672
BstACI	GRCGYC	2 cut(s)	626, 1192
BstBAI	YACGTR	2 cut(s)	324, 562
BstDEI	CTNAG	4 cut(s)	1114, 1376, 1536, 1920
BstDSI	CCRYGG	1 cut(s)	333
BstEII	GGTNACC	1 cut(s)	467
BstF5I	GGATG	6 cut(s)	612, 679, 705, 979, 1297, 1895
BstFNI	CGCG	2 cut(s)	254, 766
BstKTI	GATC	8 cut(s)	198, 492, 885, 1264, 1353, 1435, 1958, 2017
BstMAI	GTCTC	3 cut(s)	343, 1177, 1623
BstMBI	GATC	8 cut(s)	195, 489, 882, 1261, 1350, 1432, 1955, 2014
BstMWI	GCNNNNNNNGC	3 cut(s)	1157, 1198, 1688
BstNI	CCWGG	3 cut(s)	158, 1339, 1842
BstNSI	RCATGY	2 cut(s)	29, 1778
BstPI	GGTNACC	1 cut(s)	467
BstSCI	CCNGG	4 cut(s)	77, 156, 1337, 1840
BstSFI	CTRYAG	3 cut(s)	129, 1332, 1768
BstSLI	GKGCMC	1 cut(s)	1123
BstUI	CGCG	2 cut(s)	254, 766
BstV1I	GCAGC	2 cut(s)	703, 1094
BstV2I	GAAGAC	2 cut(s)	42, 2046
BstX2I	RGATCY	2 cut(s)	882, 1261
BstXI	CCANNNNNNTGG	1 cut(s)	1027
BstYI	RGATCY	2 cut(s)	882, 1261
BstZ17I	GTATAC	2 cut(s)	348, 1269
BsuRI	GGCC	5 cut(s)	33, 82, 161, 418, 1160
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	6 cut(s)	612, 679, 705, 979, 1297, 1895
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	9 cut(s)	142, 528, 938, 1150, 1329, 1394, 1556, 1632, 1989
CaiI	CAGNNNCTG	1 cut(s)	289
Cfr13I	GGNCC	4 cut(s)	32, 327, 417, 1800
CseI	GACGC	2 cut(s)	243, 1181
CsiI	ACCWGGT	1 cut(s)	1840
Csp6I	GTAC	6 cut(s)	19, 112, 250, 433, 559, 1570
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviQI	GTAC	6 cut(s)	19, 112, 250, 433, 559, 1570
DdeI	CTNAG	4 cut(s)	1114, 1376, 1536, 1920
DpnI	GATC	8 cut(s)	197, 491, 884, 1263, 1352, 1434, 1957, 2016
DpnII	GATC	8 cut(s)	195, 489, 882, 1261, 1350, 1432, 1955, 2014
DraI	TTTAAA	2 cut(s)	1155, 1897
DraIII	CACNNNGTG	1 cut(s)	1638
DrdI	GACNNNNNNGTC	1 cut(s)	1191
DseDI	GACNNNNNNGTC	1 cut(s)	1191
Eam1104I	CTCTTC	1 cut(s)	1672
EarI	CTCTTC	1 cut(s)	1672
EciI	GGCGGA	2 cut(s)	202, 413
Eco130I	CCWWGG	1 cut(s)	333
Eco147I	AGGCCT	2 cut(s)	161, 1160
Eco24I	GRGCYC	1 cut(s)	764
Eco31I	GGTCTC	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	504
Eco47I	GGWCC	2 cut(s)	327, 1800
Eco57I	CTGAAG	1 cut(s)	790
Eco72I	CACGTG	1 cut(s)	324
Eco91I	GGTNACC	1 cut(s)	467
EcoO65I	GGTNACC	1 cut(s)	467
EcoRI	GAATTC	1 cut(s)	1039
EcoRII	CCWGG	3 cut(s)	156, 1337, 1840
EcoRV	GATATC	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	1297
EcoT38I	GRGCYC	1 cut(s)	764
ErhI	CCWWGG	1 cut(s)	333
FaqI	GGGAC	2 cut(s)	24, 1386
FauI	CCCGC	2 cut(s)	350, 771
FauNDI	CATATG	2 cut(s)	1949, 2053
FbaI	TGATCA	2 cut(s)	195, 1350
FblI	GTMKAC	2 cut(s)	347, 1268
Fnu4HI	GCNGC	3 cut(s)	148, 717, 1083
FokI	GGATG	6 cut(s)	619, 686, 712, 986, 1304, 1902
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	3 cut(s)	148, 717, 1083
FspBI	CTAG	4 cut(s)	507, 1751, 1835, 1997
GluI	GCNGC	3 cut(s)	148, 717, 1083
GsaI	CCCAGC	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	1453
HaeIII	GGCC	5 cut(s)	33, 82, 161, 418, 1160
HapII	CCGG	2 cut(s)	79, 906
HgaI	GACGC	2 cut(s)	243, 1181
Hin1I	GRCGYC	2 cut(s)	626, 1192
HincII	GTYRAC	1 cut(s)	1870
HindII	GTYRAC	1 cut(s)	1870
HinfI	GANTC	6 cut(s)	153, 914, 1130, 1532, 1613, 1718
HpaII	CCGG	2 cut(s)	79, 906
HphI	GGTGA	7 cut(s)	130, 380, 479, 499, 593, 1207, 2025
Hpy166II	GTNNAC	5 cut(s)	327, 348, 1121, 1269, 1870
Hpy188I	TCNGA	7 cut(s)	68, 240, 476, 699, 919, 1458, 1537
Hpy188III	TCNNGA	4 cut(s)	507, 1053, 2125, 2172
Hpy8I	GTNNAC	5 cut(s)	327, 348, 1121, 1269, 1870
Hpy99I	CGWCG	5 cut(s)	278, 299, 628, 631, 699
HpyAV	CCTTC	6 cut(s)	106, 172, 794, 2030, 2055, 2141
HpyCH4III	ACNGT	7 cut(s)	532, 731, 903, 1145, 1333, 1398, 1636
HpyCH4IV	ACGT	4 cut(s)	17, 323, 561, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1157, 1198, 1688
HpyF3I	CTNAG	4 cut(s)	1114, 1376, 1536, 1920
HpySE526I	ACGT	4 cut(s)	17, 323, 561, 626
Hsp92I	GRCGYC	2 cut(s)	626, 1192
Ksp22I	TGATCA	2 cut(s)	195, 1350
Kzo9I	GATC	8 cut(s)	195, 489, 882, 1261, 1350, 1432, 1955, 2014
LguI	GCTCTTC	1 cut(s)	1672
LmnI	GCTCC	3 cut(s)	759, 1472, 1967
Lsp1109I	GCAGC	2 cut(s)	703, 1094
LweI	GCATC	7 cut(s)	268, 574, 690, 728, 780, 1173, 1282
MabI	ACCWGGT	1 cut(s)	1840
MaeI	CTAG	4 cut(s)	507, 1751, 1835, 1997
MaeII	ACGT	4 cut(s)	17, 323, 561, 626
MaeIII	GTNAC	6 cut(s)	319, 467, 1213, 1441, 1549, 2056
MalI	GATC	8 cut(s)	197, 491, 884, 1263, 1352, 1434, 1957, 2016
MboI	GATC	8 cut(s)	195, 489, 882, 1261, 1350, 1432, 1955, 2014
MboII	GAAGA	4 cut(s)	31, 42, 1689, 2051
MfeI	CAATTG	1 cut(s)	968
MflI	RGATCY	2 cut(s)	882, 1261
MhlI	GDGCHC	3 cut(s)	447, 764, 1123
MluI	ACGCGT	1 cut(s)	252
MlyI	GAGTC	2 cut(s)	162, 923
MmeI	TCCRAC	7 cut(s)	255, 591, 677, 753, 1212, 1225, 1622
Mph1103I	ATGCAT	1 cut(s)	1297
MroXI	GAANNNNTTC	1 cut(s)	290
MslI	CAYNNNNRTG	3 cut(s)	891, 1077, 2054
MspA1I	CMGCKG	1 cut(s)	2120
MspI	CCGG	2 cut(s)	79, 906
MspR9I	CCNGG	4 cut(s)	79, 158, 1339, 1842
MunI	CAATTG	1 cut(s)	968
Mva1269I	GAATGC	2 cut(s)	718, 1251
MvaI	CCWGG	3 cut(s)	158, 1339, 1842
MvnI	CGCG	2 cut(s)	254, 766
MwoI	GCNNNNNNNGC	3 cut(s)	1157, 1198, 1688
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	333
NdeI	CATATG	2 cut(s)	1949, 2053
NdeII	GATC	8 cut(s)	195, 489, 882, 1261, 1350, 1432, 1955, 2014
NlaIV	GGNNCC	2 cut(s)	761, 1969
NmeAIII	GCCGAG	2 cut(s)	176, 183
NmuCI	GTSAC	6 cut(s)	319, 467, 1213, 1441, 1549, 2056
NsiI	ATGCAT	1 cut(s)	1297
NspI	RCATGY	2 cut(s)	29, 1778
OliI	CACNNNNGTG	1 cut(s)	2054
PaeI	GCATGC	2 cut(s)	29, 1778
PceI	AGGCCT	2 cut(s)	161, 1160
PciSI	GCTCTTC	1 cut(s)	1672
PcsI	WCGNNNNNNNCGW	1 cut(s)	635
PctI	GAATGC	2 cut(s)	718, 1251
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	4 cut(s)	1130, 1532, 1613, 1718
PkrI	GCNGC	3 cut(s)	149, 718, 1084
PleI	GAGTC	2 cut(s)	161, 922
PmaCI	CACGTG	1 cut(s)	324
PmlI	CACGTG	1 cut(s)	324
PpsI	GAGTC	2 cut(s)	161, 922
Ppu21I	YACGTR	2 cut(s)	324, 562
PshBI	ATTAAT	1 cut(s)	1065
Psp6I	CCWGG	3 cut(s)	156, 1337, 1840
PspCI	CACGTG	1 cut(s)	324
PspEI	GGTNACC	1 cut(s)	467
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	3 cut(s)	156, 1337, 1840
PspN4I	GGNNCC	2 cut(s)	761, 1969
PspPI	GGNCC	4 cut(s)	32, 327, 417, 1800
PstI	CTGCAG	1 cut(s)	1772
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	2 cut(s)	882, 1261
PvuII	CAGCTG	1 cut(s)	2120
RsaI	GTAC	6 cut(s)	20, 113, 251, 434, 560, 1571
RsaNI	GTAC	6 cut(s)	19, 112, 250, 433, 559, 1570
RseI	CAYNNNNRTG	3 cut(s)	891, 1077, 2054
SapI	GCTCTTC	1 cut(s)	1672
SatI	GCNGC	3 cut(s)	148, 717, 1083
Sau3AI	GATC	8 cut(s)	195, 489, 882, 1261, 1350, 1432, 1955, 2014
Sau96I	GGNCC	4 cut(s)	32, 327, 417, 1800
SbfI	CCTGCAGG	1 cut(s)	1772
SchI	GAGTC	2 cut(s)	162, 923
ScrFI	CCNGG	4 cut(s)	79, 158, 1339, 1842
SdaI	CCTGCAGG	1 cut(s)	1772
SduI	GDGCHC	3 cut(s)	447, 764, 1123
SexAI	ACCWGGT	1 cut(s)	1840
SfaNI	GCATC	7 cut(s)	268, 574, 690, 728, 780, 1173, 1282
SfcI	CTRYAG	3 cut(s)	129, 1332, 1768
SinI	GGWCC	2 cut(s)	327, 1800
SmiMI	CAYNNNNRTG	3 cut(s)	891, 1077, 2054
SmlI	CTYRAG	3 cut(s)	446, 1003, 1180
SmoI	CTYRAG	3 cut(s)	446, 1003, 1180
SpeI	ACTAGT	1 cut(s)	1996
SphI	GCATGC	2 cut(s)	29, 1778
Sse8387I	CCTGCAGG	1 cut(s)	1772
SseBI	AGGCCT	2 cut(s)	161, 1160
SsiI	CCGC	8 cut(s)	4, 121, 148, 213, 357, 398, 680, 764
SspMI	CTAG	4 cut(s)	507, 1751, 1835, 1997
StuI	AGGCCT	2 cut(s)	161, 1160
StyD4I	CCNGG	4 cut(s)	77, 156, 1337, 1840
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	7 cut(s)	532, 731, 903, 1145, 1333, 1398, 1636
TaiI	ACGT	4 cut(s)	20, 326, 564, 629
TaqI	TCGA	3 cut(s)	273, 294, 623
TatI	WGTACW	3 cut(s)	111, 432, 1569
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	4 cut(s)	1130, 1532, 1613, 1718
TscAI	CASTG	9 cut(s)	149, 535, 945, 1150, 1336, 1401, 1563, 1639, 1996
TseFI	GTSAC	6 cut(s)	319, 467, 1213, 1441, 1549, 2056
TseI	GCWGC	2 cut(s)	716, 1082
Tsp45I	GTSAC	6 cut(s)	319, 467, 1213, 1441, 1549, 2056
TspRI	CASTG	9 cut(s)	149, 535, 945, 1150, 1336, 1401, 1563, 1639, 1996
VneI	GTGCAC	1 cut(s)	1119
VpaK11BI	GGWCC	2 cut(s)	327, 1800
VspI	ATTAAT	1 cut(s)	1065
XapI	RAATTY	3 cut(s)	776, 958, 1039
XbaI	TCTAGA	1 cut(s)	506
XceI	RCATGY	2 cut(s)	29, 1778
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42
XmiI	GTMKAC	2 cut(s)	347, 1268
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	4 cut(s)	507, 1751, 1835, 1997
ZraI	GACGTC	1 cut(s)	627
Zsp2I	ATGCAT	1 cut(s)	1297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.