Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006885

Physical Location & Seq

Genomic Coordinates Forward (+)

27059182 .. 27059764

Gene Structure 583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033429

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGAAGCAACGATGAGCTGAAGTCGGAGGTGCTGGAGCAGATGAAATATCAGAACGTTGATAAAGTCTTCGTCAAGAAGATCGGTCTCGTTTATCAGATCAAAATCGCACCCAAGAAAATTGGGTTTAATGAGTTGGCTTACACCATTGATCTGAGGAAAGGAGAGGTCACGAAAGAGGCATACGAAGGAAGAAACGCATATGCCATATTTTCGTTCAAGGCTAAGAATTTCGTGAAGATTGTGCTGGGGAAGATGAATCCCCAAATTGCTTTCAATCCTTTCATCGAGGGCTTAATTACTTGGCTCCAATCAATTTCTTCAAATACCACTCCAGTGGCACCACAAGAAGGTGGTGCAAGGATGATGGATTTCAATTGTAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0019752 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0032502 GO:0032787 GO:0035556 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCP2

Protein Analysis

130

Amino Acids

14.59

Weight (kDa)

9.3

Isoelectric Point (pI)

24.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCP2	PF02036	20 - 92	3.5e-06	SCP-2 sterol transfer family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42890
fragaria_vesca	FvH4_2g34440 FvH4_2g34441
malus_domestica	MD00G1215600.v1.1 MD08G1101600.v1.1 MD15G1083000.v1.1
prunus_persica	Prupe.1G435500_v2.0.a1
pyrus_communis	pycom08g08210
rosa_chinensis	RchiOBHm_Chr5g0032801 RchiOBHm_Chr6g0307931
rosa_laevigata	RLG00000010686 RLG00000033429
rosa_multiflora	Rmu_sc0003252.1_g000020
rosa_roxburghii	Rroxscaffold_2G00127110 Rroxscaffold_7G00160760
rosa_rugosa	Rorug06G0361700 Rorug06G0361800 Rorug06G0361900
rosa_samantha	Rh5CG255500 Rh6AG470800 Rh6BG481800 Rh6CG487200 Rh6DG473300 Rh7DG462100
rosa_wichuraiana	Rw5G020780 Rw6G041110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	340
AclI	AACGTT	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	4 cut(s)	220, 277, 324, 376
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	2 cut(s)	19, 385
AluI	AGCT	2 cut(s)	19, 385
Alw26I	GTCTC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	61
BccI	CCATC	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	92
BmiI	GGNNCC	2 cut(s)	308, 342
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	2 cut(s)	56, 318
BsaBI	GATNNNNATC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	104
BseGI	GGATG	1 cut(s)	369
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	335
BseYI	CCCAGC	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	92
Bsp143I	GATC	3 cut(s)	81, 99, 151
BspCNI	CTCAG	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	308, 342
BspT107I	GGYRCC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	335
BssMI	GATC	3 cut(s)	81, 99, 151
BstDEI	CTNAG	2 cut(s)	155, 225
BstF5I	GGATG	1 cut(s)	369
BstKTI	GATC	3 cut(s)	84, 102, 154
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	3 cut(s)	81, 99, 151
BstV2I	GAAGAC	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	342
CviJI	RGCY	6 cut(s)	19, 140, 224, 294, 307, 385
CviKI_1	RGCY	6 cut(s)	19, 140, 224, 294, 307, 385
DdeI	CTNAG	2 cut(s)	155, 225
DpnI	GATC	3 cut(s)	83, 101, 153
DpnII	GATC	3 cut(s)	81, 99, 151
Eco31I	GGTCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	41
FaiI	YATR	4 cut(s)	184, 202, 204, 209
FauNDI	CATATG	1 cut(s)	202
FokI	GGATG	1 cut(s)	376
GsaI	CCCAGC	1 cut(s)	251
GsuI	CTGGAG	2 cut(s)	56, 318
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	1 cut(s)	259
Hpy188I	TCNGA	4 cut(s)	28, 54, 99, 156
Hpy188III	TCNNGA	3 cut(s)	76, 172, 235
HpyAV	CCTTC	2 cut(s)	182, 344
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	359
HpyF3I	CTNAG	2 cut(s)	155, 225
HpySE526I	ACGT	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	81, 99, 151
LmnI	GCTCC	2 cut(s)	37, 312
LpnPI	CCDG	3 cut(s)	20, 233, 348
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	3 cut(s)	83, 101, 153
MboI	GATC	3 cut(s)	81, 99, 151
MboII	GAAGA	6 cut(s)	61, 91, 204, 250, 265, 312
MfeI	CAATTG	1 cut(s)	376
MluCI	AATT	6 cut(s)	120, 229, 267, 297, 315, 376
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	5 cut(s)	22, 150, 160, 172, 283
MseI	TTAA	2 cut(s)	129, 296
MslI	CAYNNNNRTG	1 cut(s)	335
MunI	CAATTG	1 cut(s)	376
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	3 cut(s)	81, 99, 151
NlaIV	GGNNCC	2 cut(s)	308, 342
NmuCI	GTSAC	1 cut(s)	169
OliI	CACNNNNGTG	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	259
Psp1406I	AACGTT	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	247
PspN4I	GGNNCC	2 cut(s)	308, 342
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	129, 296
Sau3AI	GATC	3 cut(s)	81, 99, 151
SetI	ASST	6 cut(s)	21, 33, 60, 171, 355, 387
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	6 cut(s)	120, 229, 267, 297, 315, 376
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	288
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	6 cut(s)	120, 229, 267, 297, 315, 376
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	129, 296
Tru9I	TTAA	2 cut(s)	129, 296
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	59, 272, 274
TspRI	CASTG	1 cut(s)	342
XapI	RAATTY	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.