Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006885

Physical Location & Seq

Genomic Coordinates Forward (+)

25587602 .. 25588474

Gene Structure 873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGGAGCAACGATGAGCTCAAGTCGGACGCTTTCCTGGAGCAGATGAAACAGCACCTCACCACCGACGCCGGTAAAGCCATCGTCAAGAAGACCGGCCTCGTTTACCAGATGAACATCGCACCCAAGAAAATCGGGTTCAATGAGGTGAGTTTCACCATTGATCTGAAGAAAGGGGAGGTGAAGAAAGGGGCGTATGAAGAAGGAAAGGCGGATGCGGTGTTTTCGTTCAAGGACGATGATTTCGTGAAGCTAGCGCTGGGGAAGATGAATCCCCAGATTGCTTTCATGAGAGGAGCCATAAAGATTAAGGGAAGCATGAGTGCTGCTTACAAATTCCCTTCCGACATTTTCCCCAAGCCTTCCGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0019752 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0032502 GO:0032787 GO:0035556 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCP2

Protein Analysis

125

Amino Acids

13.69

Weight (kDa)

9.2

Isoelectric Point (pI)

17.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCP2	PF02036	14 - 113	1.8e-18	SCP-2 sterol transfer family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42890
fragaria_vesca	FvH4_2g34440 FvH4_2g34441
malus_domestica	MD00G1215600.v1.1 MD08G1101600.v1.1 MD15G1083000.v1.1
prunus_persica	Prupe.1G435500_v2.0.a1
pyrus_communis	pycom08g08210
rosa_chinensis	RchiOBHm_Chr5g0032801 RchiOBHm_Chr6g0307931
rosa_laevigata	RLG00000010686 RLG00000033429
rosa_multiflora	Rmu_sc0003252.1_g000020
rosa_roxburghii	Rroxscaffold_2G00127110 Rroxscaffold_7G00160760
rosa_rugosa	Rorug06G0361700 Rorug06G0361800 Rorug06G0361900
rosa_samantha	Rh5CG255500 Rh6AG470800 Rh6BG481800 Rh6CG487200 Rh6DG473300 Rh7DG462100
rosa_wichuraiana	Rw5G020780 Rw6G041110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	212, 218
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	69
AfeI	AGCGCT	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	142, 232
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	2 cut(s)	19, 253
AluI	AGCT	2 cut(s)	19, 253
Alw21I	GWGCWC	1 cut(s)	21
Aor51HI	AGCGCT	1 cut(s)	258
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	335
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspLEI	GCGC	1 cut(s)	259
AsuHPI	GGTGA	4 cut(s)	52, 148, 160, 193
AsuNHI	GCTAGC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	38
BfaI	CTAG	1 cut(s)	254
BfoI	RGCGCY	1 cut(s)	260
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	205
BmtI	GCTAGC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	5
BsaBI	GATNNNNATC	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	69
Bse118I	RCCGGY	2 cut(s)	71, 95
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	259
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	72, 96
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	2 cut(s)	212, 218
BspANI	GGCC	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	298
BspOI	GCTAGC	1 cut(s)	257
BsrFI	RCCGGY	2 cut(s)	71, 95
BssAI	RCCGGY	2 cut(s)	71, 95
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	220
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	255
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	2 cut(s)	71, 95
CseI	GACGC	2 cut(s)	38, 77
CviAII	CATG	2 cut(s)	289, 319
CviJI	RGCY	6 cut(s)	19, 80, 99, 253, 299, 361
CviKI_1	RGCY	6 cut(s)	19, 80, 99, 253, 299, 361
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EciI	GGCGGA	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco47III	AGCGCT	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	2 cut(s)	292, 322
FaiI	YATR	4 cut(s)	198, 290, 302, 320
FatI	CATG	2 cut(s)	288, 318
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	327
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	59
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	2 cut(s)	72, 96
HgaI	GACGC	2 cut(s)	38, 77
HhaI	GCGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	292, 322
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	2 cut(s)	72, 96
HphI	GGTGA	4 cut(s)	52, 148, 160, 193
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	4 cut(s)	28, 168, 346, 367
Hpy188III	TCNNGA	3 cut(s)	88, 247, 289
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	197, 351, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	292, 322
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	3 cut(s)	6, 40, 296
LpnPI	CCDG	7 cut(s)	23, 50, 85, 109, 122, 245, 290
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	254
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	5 cut(s)	103, 181, 196, 212, 277
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	6, 369
MnlI	CCTC	5 cut(s)	68, 110, 139, 172, 287
MseI	TTAA	1 cut(s)	309
MspI	CCGG	2 cut(s)	72, 96
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	1 cut(s)	163
NheI	GCTAGC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	292, 322
NlaIV	GGNNCC	1 cut(s)	298
PagI	TCATGA	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	271
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	328
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	36
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	298
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	5 cut(s)	21, 60, 150, 183, 255
SfaNI	GCATC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	335
SsiI	CCGC	2 cut(s)	212, 218
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	36
TasI	AATT	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	5 cut(s)	62, 128, 213, 277, 284
XapI	RAATTY	1 cut(s)	335
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.