Rorug06G0361700

Non-specific lipid-transfer protein-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
51007506 .. 51009454
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0361700.1

Sequence Viewer

Length: 360 bp
ATGTATTTGTCTTATGACTGCTTTTTCTCGTATTTATTGAGGTTGAAATATGAATCTAGTCAGGTTCTTCATAGAGCTAACTGCAGGCATGGATGCTCAGAAAGATGCCTGTACATGATATTTATCTTTGGTTGCAGATTTAGCTTCCCATCCTGTGTATCATATCTGGGGTATGATGATACAATCAGTAGCAGAGCAAGTTGCCAGTTGAAGGTTCATGATGGATTCATAGACATGATGGCCCTGGTACCTGAACCTGGGAAATGGTCCAGCGGGTCCATCCCATTTGAGCCTGACCCGACACAATGGGAAACAAGAACCTATAGTAATGCAAGAAAGTTCACAAACAAAGTTACCTAG

Protein Analysis

119

Amino Acids

13.83

Weight (kDa)

8.17

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 247
AciI CCGC 1 cut(s) 273
AfaI GTAC 2 cut(s) 113, 249
AfiI CCNNNNNNNGG 2 cut(s) 211, 257
AgsI TTSAA 2 cut(s) 46, 211
AjnI CCWGG 2 cut(s) 243, 256
AluBI AGCT 2 cut(s) 77, 144
AluI AGCT 2 cut(s) 77, 144
AoxI GGCC 1 cut(s) 240
Asp718I GGTACC 1 cut(s) 247
AspS9I GGNCC 3 cut(s) 241, 267, 276
AvaII GGWCC 2 cut(s) 267, 276
BanI GGYRCC 1 cut(s) 247
BccI CCATC 4 cut(s) 157, 215, 232, 287
BciT130I CCWGG 2 cut(s) 245, 258
BfaI CTAG 2 cut(s) 57, 358
BfmI CTRYAG 2 cut(s) 82, 322
Bme1390I CCNGG 2 cut(s) 245, 258
Bme18I GGWCC 2 cut(s) 267, 276
BmgT120I GGNCC 3 cut(s) 241, 267, 276
BmiI GGNNCC 2 cut(s) 249, 277
BmrFI CCNGG 2 cut(s) 245, 258
BmsI GCATC 2 cut(s) 83, 95
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 243, 257
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 257
Bse1I ACTGG 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 2 cut(s) 245, 258
BseDI CCNNGG 2 cut(s) 243, 257
BseGI GGATG 3 cut(s) 98, 149, 279
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 211, 257
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 205
BshFI GGCC 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 211, 257
BsnI GGCC 1 cut(s) 242
Bsp1407I TGTACA 1 cut(s) 111
BspACI CCGC 1 cut(s) 273
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 110
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 249, 277
BspMAI CTGCAG 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 247
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 243, 257
Bst2UI CCWGG 2 cut(s) 245, 258
BstAUI TGTACA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 3 cut(s) 98, 149, 279
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 2 cut(s) 245, 258
BstSCI CCNGG 2 cut(s) 243, 256
BstSFI CTRYAG 2 cut(s) 82, 322
BsuRI GGCC 1 cut(s) 242
BtsCI GGATG 3 cut(s) 98, 149, 279
Cac8I GCNNGC 1 cut(s) 86
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 3 cut(s) 241, 267, 276
Csp6I GTAC 2 cut(s) 112, 248
CviAII CATG 4 cut(s) 89, 115, 218, 235
CviJI RGCY 4 cut(s) 77, 144, 242, 292
CviKI_1 RGCY 4 cut(s) 77, 144, 242, 292
CviQI GTAC 2 cut(s) 112, 248
DdeI CTNAG 1 cut(s) 97
Eco47I GGWCC 2 cut(s) 267, 276
EcoRII CCWGG 2 cut(s) 243, 256
FaeI CATG 4 cut(s) 92, 118, 221, 238
FatI CATG 4 cut(s) 88, 114, 217, 234
FauI CCCGC 1 cut(s) 266
FokI GGATG 3 cut(s) 105, 136, 266
FspBI CTAG 2 cut(s) 57, 358
HaeIII GGCC 1 cut(s) 242
Hin1II CATG 4 cut(s) 92, 118, 221, 238
HinfI GANTC 2 cut(s) 53, 225
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 342
HpyAV CCTTC 1 cut(s) 205
HpyCH4V TGCA 3 cut(s) 84, 135, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 4 cut(s) 92, 118, 221, 238
KpnI GGTACC 1 cut(s) 251
LweI GCATC 2 cut(s) 83, 95
MaeI CTAG 2 cut(s) 57, 358
MaeIII GTNAC 1 cut(s) 352
MboII GAAGA 1 cut(s) 59
MnlI CCTC 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 245, 258
MvaI CCWGG 2 cut(s) 245, 258
MwoI GCNNNNNNNGC 1 cut(s) 141
NlaIII CATG 4 cut(s) 92, 118, 221, 238
NlaIV GGNNCC 2 cut(s) 249, 277
PagI TCATGA 1 cut(s) 217
PfeI GAWTC 2 cut(s) 53, 225
Psp6I CCWGG 2 cut(s) 243, 256
PspGI CCWGG 2 cut(s) 243, 256
PspN4I GGNNCC 2 cut(s) 249, 277
PspPI GGNCC 3 cut(s) 241, 267, 276
PstI CTGCAG 1 cut(s) 86
RsaI GTAC 2 cut(s) 113, 249
RsaNI GTAC 2 cut(s) 112, 248
RseI CAYNNNNRTG 1 cut(s) 233
Sau96I GGNCC 3 cut(s) 241, 267, 276
ScrFI CCNGG 2 cut(s) 245, 258
SetI ASST 9 cut(s) 44, 66, 79, 146, 216, 253, 259, 323, 359
SfaNI GCATC 2 cut(s) 83, 95
SfcI CTRYAG 2 cut(s) 82, 322
SinI GGWCC 2 cut(s) 267, 276
SmiMI CAYNNNNRTG 1 cut(s) 233
SsiI CCGC 1 cut(s) 273
SspMI CTAG 2 cut(s) 57, 358
StyD4I CCNGG 2 cut(s) 243, 256
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 2 cut(s) 53, 225
TspDTI ATGAA 4 cut(s) 59, 66, 206, 217
VpaK11BI GGWCC 2 cut(s) 267, 276
XspI CTAG 2 cut(s) 57, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.