Rw5G020780

Non-specific lipid-transfer protein-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
27526943 .. 27527307
365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G020780.1

Sequence Viewer

Length: 336 bp
ATGGGAAGCAACAATGAGTTGAAGTCGAAGGTGCTGGAGCAGATGAAACAGCAGAACGCCAGTAAAGTCATAGTTAAGAAGATCGGTCTCGTTTATCAGATCAAAATCGCACCCAAGAAAATTGGGTTCAATGGGTTGGCTTACACCATTGATCTGATCAGGAAAGGAGAGAAACGCATATATATATATGTGCTATTTTCGTTCAAGGTTGAGAATTTCGTGAAGATTGCGCTGGGGAAGATAAATCCCCAAATTGCTTTCAATCCTTTCATCGAGGGCTTAATTACTTGGCTCCAATCAATTTCTTCAAATACCAGTTACTTCAATTTAGCTTGA

Protein Analysis

111

Amino Acids

12.62

Weight (kDa)

9.95

Isoelectric Point (pI)

18.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 214
AgsI TTSAA 6 cut(s) 22, 130, 205, 262, 309, 325
AluBI AGCT 1 cut(s) 332
AluI AGCT 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 214
AspLEI GCGC 1 cut(s) 232
BclI TGATCA 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 60, 315
Bse8I GATNNNNATC 1 cut(s) 104
BseJI GATNNNNATC 1 cut(s) 104
BseNI ACTGG 2 cut(s) 60, 315
BseYI CCCAGC 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 92
Bsp143I GATC 4 cut(s) 81, 99, 151, 156
BspLI GGNNCC 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 92
BsrI ACTGG 2 cut(s) 60, 315
BssMI GATC 4 cut(s) 81, 99, 151, 156
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 4 cut(s) 84, 102, 154, 159
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 4 cut(s) 81, 99, 151, 156
CfoI GCGC 1 cut(s) 232
CviJI RGCY 4 cut(s) 140, 279, 292, 332
CviKI_1 RGCY 4 cut(s) 140, 279, 292, 332
DpnI GATC 4 cut(s) 83, 101, 153, 158
DpnII GATC 4 cut(s) 81, 99, 151, 156
Eco31I GGTCTC 1 cut(s) 92
FaiI YATR 7 cut(s) 71, 179, 181, 183, 185, 187, 189
FbaI TGATCA 1 cut(s) 156
GlaI GCGC 1 cut(s) 231
GsaI CCCAGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 56
HhaI GCGC 1 cut(s) 232
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
Hpy188I TCNGA 2 cut(s) 99, 156
Hpy188III TCNNGA 2 cut(s) 160, 220
HpyAV CCTTC 1 cut(s) 22
HspAI GCGC 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 4 cut(s) 81, 99, 151, 156
LmnI GCTCC 2 cut(s) 37, 297
LpnPI CCDG 5 cut(s) 20, 73, 145, 218, 328
MaeIII GTNAC 1 cut(s) 317
MalI GATC 4 cut(s) 83, 101, 153, 158
MboI GATC 4 cut(s) 81, 99, 151, 156
MboII GAAGA 4 cut(s) 91, 235, 250, 297
MluCI AATT 6 cut(s) 120, 214, 252, 282, 300, 325
MnlI CCTC 1 cut(s) 268
MseI TTAA 2 cut(s) 75, 281
NdeII GATC 4 cut(s) 81, 99, 151, 156
NlaIV GGNNCC 1 cut(s) 293
PspFI CCCAGC 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 75, 281
Sau3AI GATC 4 cut(s) 81, 99, 151, 156
SetI ASST 3 cut(s) 33, 210, 334
Sse9I AATT 6 cut(s) 120, 214, 252, 282, 300, 325
TaqI TCGA 2 cut(s) 26, 273
TaqII GACCGA 1 cut(s) 74
TasI AATT 6 cut(s) 120, 214, 252, 282, 300, 325
Tru1I TTAA 2 cut(s) 75, 281
Tru9I TTAA 2 cut(s) 75, 281
TspDTI ATGAA 2 cut(s) 59, 259
XapI RAATTY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.