AT5G43760

3-ketoacyl-coa synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012768
Physical Location & Seq
Forward (+)
17585523 .. 17588733
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43760.1

Sequence Viewer

Length: 1590 bp
ATGAGCCATAACCAAAACCAACCTCACCGGCCAGTCCCGGTCCATGTCACAAACGCCGAGCCAAACCCTAACCCAAACAACCTCCCAAACTTTCTATTATCCGTCCGTCTCAAATACGTAAAACTCGGTTACCACTACCTAATCTCCAACGCTCTCTACATCCTCCTCCTTCCTCTCCTCGCCGCAACAATCGCTAACCTCTCTTCTTTCACCATCAACGACCTCTCTCTCCTCTACAACACACTCCGTTTCCATTTCCTCTCCGCCACACTCGCCACCGCACTCTTAATCTCTCTCTCCACCGCTTACTTCACCACCCGTCCCCGCCGTGTCTTCCTCCTCGACTTCTCGTGTTACAAACCAGACCCTTCACTGATCTGCACTCGTGAAACATTCATGGACAGATCTCAACGTGTAGGCATCTTCACAGAAGACAACTTAGCTTTCCAACAAAAGATCCTCGAAAGATCCGGTCTAGGTCAGAAAACTTACTTCCCTGAAGCTCTTCTTCGTGTTCCTCCTAATCCTTGTATGGAAGAAGCGAGAAAAGAGGCAGAAACAGTTATGTTCGGAGCTATTGACGCGGTTCTTGAGAAGACCGGTGTGAAACCTAAAGATATTGGAATCCTTGTGGTGAATTGTAGCTTGTTTAATCCAACACCGTCACTTTCTGCTATGATTGTGAATAAGTATAAGCTTAGAGGCAACATTTTGAGCTATAATCTTGGTGGAATGGGATGTAGTGCTGGCCTTATCTCCATTGATCTCGCTAAACAGATGCTTCAGGTGCAACCAAACTCATACGCACTAGTGGTGAGCACAGAGAACATAACCCTAAACTGGTACTTAGGCAACGACCGATCAATGCTTCTATCTAACTGTATCTTCCGTATGGGCGGAGCCGCGGTACTTCTCTCGAACCGCTCCTCTGATCGCAGCCGTTCAAAATATCAGCTCATCCATACCGTCCGTACCCACAAAGGAGCTGATGACAACGCATTTGGCTGTGTTTACCAACGAGAAGACAACAACGCAGAAGAAACCGGCAAAATCGGAGTGTCCCTCTCTAAAAACCTAATGGCGATAGCTGGAGAAGCTCTCAAGACAAACATCACAACTCTCGGACCACTAGTTCTACCAATGTCCGAACAACTTCTCTTTTTCGCGACTCTTGTGGCCCGAAAAGTCTTCAAAGTCAAGAAAATAAAGCCTTACATTCCTGATTTCAAGCTAGCTTTCGAGCATTTCTGTATCCACGCGGGAGGTAGAGCCGTGCTCGACGAGATTGAGAAGAACTTGGATTTATCCGAATGGCACATGGAGCCATCGAGGATGACGTTGAACCGGTTTGGTAACACTTCGAGTAGCTCACTTTGGTATGAGCTTGCGTATAGTGAAGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCAGATTGCTTTTGGATCGGGTTTTAAGTGTAATAGTGCAGTTTGGAAAGCTTTGAGAACGATTGATCCAATGGACGAGAAGACTAATCCATGGATTGATGAGATTGATGACTTTCCTGTTCAAGTTCCTAGGATCACTCCCATTACATCGTCGTAG

Protein Analysis

529

Amino Acids

59.31

Weight (kDa)

9.09

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 103 - 396 8.6e-140 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 414 - 494 1.8e-10 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 416 - 492 1.4e-08 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04220 AT5G43760
fragaria_vesca FvH4_4g01980 FvH4_7g17470
malus_domestica MD13G1203100.v1.1
prunus_persica Prupe.1G025600_v2.0.a1
pyrus_communis pycom07g15420 pycom13g17640 pycom16g17200
rosa_chinensis RchiOBHm_Chr4g0388941
rosa_laevigata RLG00000010005
rosa_multiflora Rmu_sc0005486.1_g000002
rosa_roxburghii Rroxscaffold_5G00335260
rosa_rugosa Rorug03G0321500
rosa_samantha Rh4AG025900 Rh4BG019200 Rh4DG019700
rosa_wichuraiana Rw4G001870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 924
AccII CGCG 4 cut(s) 584, 905, 1166, 1259
AclWI GGATC 5 cut(s) 451, 462, 1456, 1493, 1574
AcoI YGGCCR 1 cut(s) 29
AcuI CTGAAG 2 cut(s) 519, 767
AfaI GTAC 3 cut(s) 845, 909, 973
AfiI CCNNNNNNNGG 1 cut(s) 840
AflIII ACRYGT 1 cut(s) 412
AgeI ACCGGT 2 cut(s) 599, 1344
AgsI TTSAA 5 cut(s) 945, 1192, 1228, 1342, 1556
AhlI ACTAGT 2 cut(s) 808, 1129
AloI GAACNNNNNNTCC 4 cut(s) 1116, 1148, 1483, 1515
Alw21I GWGCWC 2 cut(s) 821, 1278
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 5 cut(s) 451, 462, 1456, 1493, 1574
AoxI GGCC 3 cut(s) 29, 748, 1176
ApeKI GCWGC 1 cut(s) 936
ArsI GACNNNNNNTTYG 2 cut(s) 983, 1015
AsiGI ACCGGT 2 cut(s) 599, 1344
Asp700I GAANNNNTTC 2 cut(s) 504, 1152
AspA2I CCTAGG 1 cut(s) 1562
AspS9I GGNCC 3 cut(s) 40, 1124, 1177
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 5 cut(s) 17, 202, 304, 646, 826
AsuNHI GCTAGC 1 cut(s) 1231
AvaII GGWCC 2 cut(s) 40, 1124
AvrII CCTAGG 1 cut(s) 1562
BauI CACGAG 2 cut(s) 349, 384
BbsI GAAGAC 6 cut(s) 325, 438, 602, 1029, 1180, 1520
Bbv12I GWGCWC 2 cut(s) 821, 1278
BbvI GCAGC 1 cut(s) 948
BccI CCATC 2 cut(s) 221, 1333
BceAI ACGGC 3 cut(s) 312, 924, 1256
BciVI GTATCC 1 cut(s) 1262
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 113
BcuI ACTAGT 2 cut(s) 808, 1129
BfaI CTAG 5 cut(s) 476, 809, 1130, 1232, 1563
BfuI GTATCC 1 cut(s) 1262
BglII AGATCT 1 cut(s) 404
BisI GCNGC 3 cut(s) 183, 903, 937
BlnI CCTAGG 1 cut(s) 1562
BlsI GCNGC 3 cut(s) 184, 904, 938
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 2 cut(s) 40, 1124
BmgT120I GGNCC 3 cut(s) 40, 1124, 1177
BmiI GGNNCC 2 cut(s) 901, 1323
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 429, 768
BmtI GCTAGC 1 cut(s) 1235
BpiI GAAGAC 6 cut(s) 325, 438, 602, 1029, 1180, 1520
BplI GAGNNNNNCTC 6 cut(s) 1047, 1079, 1083, 1115, 1260, 1292
BpmI CTGGAG 1 cut(s) 1110
BpuEI CTTGAG 2 cut(s) 611, 1085
BpuMI CCSGG 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 118
BsaJI CCNNGG 3 cut(s) 903, 1523, 1562
BsaWI WCCGGW 3 cut(s) 470, 599, 1344
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 891, 921
Bsc4I CCNNNNNNNGG 1 cut(s) 840
Bse118I RCCGGY 4 cut(s) 27, 599, 1043, 1344
Bse1I ACTGG 2 cut(s) 32, 845
BseDI CCNNGG 3 cut(s) 903, 1523, 1562
BseGI GGATG 4 cut(s) 159, 743, 957, 1338
BseLI CCNNNNNNNGG 1 cut(s) 840
BseNI ACTGG 2 cut(s) 32, 845
BseRI GAGGAG 6 cut(s) 155, 167, 221, 329, 916, 1434
BseXI GCAGC 1 cut(s) 948
BsgI GTGCAG 2 cut(s) 364, 1491
Bsh1236I CGCG 4 cut(s) 584, 905, 1166, 1259
Bsh1285I CGRYCG 1 cut(s) 859
BshFI GGCC 3 cut(s) 31, 750, 1178
BshTI ACCGGT 2 cut(s) 599, 1344
BsiEI CGRYCG 1 cut(s) 859
BsiHKAI GWGCWC 2 cut(s) 821, 1278
BsiSI CCGG 6 cut(s) 28, 38, 471, 600, 1044, 1345
BslFI GGGAC 3 cut(s) 20, 306, 1045
BslI CCNNNNNNNGG 1 cut(s) 840
BsmAI GTCTC 1 cut(s) 113
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 3 cut(s) 20, 306, 1045
BsnI GGCC 3 cut(s) 31, 750, 1178
Bsp1286I GDGCHC 2 cut(s) 821, 1278
Bsp19I CCATGG 1 cut(s) 1523
Bsp68I TCGCGA 1 cut(s) 1166
BspANI GGCC 3 cut(s) 31, 750, 1178
BspFNI CGCG 4 cut(s) 584, 905, 1166, 1259
BspLI GGNNCC 2 cut(s) 901, 1323
BspOI GCTAGC 1 cut(s) 1235
BspPI GGATC 5 cut(s) 451, 462, 1456, 1493, 1574
BspQI GCTCTTC 1 cut(s) 510
BsrBI CCGCTC 1 cut(s) 924
BsrFI RCCGGY 4 cut(s) 27, 599, 1043, 1344
BsrI ACTGG 2 cut(s) 32, 845
BssAI RCCGGY 4 cut(s) 27, 599, 1043, 1344
BssECI CCNNGG 3 cut(s) 903, 1523, 1562
BssSI CACGAG 2 cut(s) 349, 384
BssT1I CCWWGG 2 cut(s) 1523, 1562
Bst2BI CACGAG 2 cut(s) 349, 384
Bst4CI ACNGT 4 cut(s) 562, 663, 881, 967
Bst6I CTCTTC 2 cut(s) 208, 510
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 3 cut(s) 748, 1233, 1386
BstDEI CTNAG 3 cut(s) 439, 698, 847
BstDSI CCRYGG 2 cut(s) 903, 1523
BstEII GGTNACC 1 cut(s) 128
BstF5I GGATG 4 cut(s) 159, 743, 957, 1338
BstFNI CGCG 4 cut(s) 584, 905, 1166, 1259
BstMAI GTCTC 1 cut(s) 113
BstMCI CGRYCG 1 cut(s) 859
BstMWI GCNNNNNNNGC 6 cut(s) 191, 272, 581, 787, 1094, 1321
BstPI GGTNACC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 36
BstSNI TACGTA 1 cut(s) 118
BstUI CGCG 4 cut(s) 584, 905, 1166, 1259
BstV1I GCAGC 1 cut(s) 948
BstV2I GAAGAC 6 cut(s) 325, 438, 602, 1029, 1180, 1520
BstX2I RGATCY 3 cut(s) 404, 456, 467
BstYI RGATCY 3 cut(s) 404, 456, 467
BsuI GTATCC 1 cut(s) 1262
BsuRI GGCC 3 cut(s) 31, 750, 1178
BtgI CCRYGG 2 cut(s) 903, 1523
BtsCI GGATG 4 cut(s) 159, 743, 957, 1338
BtsIMutI CAGTG 1 cut(s) 371
BtuMI TCGCGA 1 cut(s) 1166
Cac8I GCNNGC 3 cut(s) 748, 1233, 1386
Cfr10I RCCGGY 4 cut(s) 27, 599, 1043, 1344
Cfr13I GGNCC 3 cut(s) 40, 1124, 1177
Cfr42I CCGCGG 1 cut(s) 906
CseI GACGC 1 cut(s) 590
Csp6I GTAC 3 cut(s) 844, 908, 972
CspAI ACCGGT 2 cut(s) 599, 1344
CviAII CATG 4 cut(s) 44, 397, 1318, 1524
CviQI GTAC 3 cut(s) 844, 908, 972
DdeI CTNAG 3 cut(s) 439, 698, 847
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 208, 510
EarI CTCTTC 2 cut(s) 208, 510
EciI GGCGGA 2 cut(s) 253, 912
Eco105I TACGTA 1 cut(s) 118
Eco130I CCWWGG 2 cut(s) 1523, 1562
Eco47I GGWCC 2 cut(s) 40, 1124
Eco57I CTGAAG 2 cut(s) 519, 767
Eco91I GGTNACC 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 128
EcoT14I CCWWGG 2 cut(s) 1523, 1562
ErhI CCWWGG 2 cut(s) 1523, 1562
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 4 cut(s) 47, 400, 1321, 1527
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 3 cut(s) 20, 306, 1045
FatI CATG 4 cut(s) 43, 396, 1317, 1523
FauI CCCGC 2 cut(s) 332, 1252
Fnu4HI GCNGC 3 cut(s) 183, 903, 937
FokI GGATG 4 cut(s) 146, 750, 944, 1345
Fsp4HI GCNGC 3 cut(s) 183, 903, 937
FspBI CTAG 5 cut(s) 476, 809, 1130, 1232, 1563
GluI GCNGC 3 cut(s) 183, 903, 937
GsuI CTGGAG 1 cut(s) 1110
HaeIII GGCC 3 cut(s) 31, 750, 1178
HapII CCGG 6 cut(s) 28, 38, 471, 600, 1044, 1345
HgaI GACGC 1 cut(s) 590
Hin1II CATG 4 cut(s) 47, 400, 1321, 1527
HindIII AAGCTT 2 cut(s) 695, 1482
HinfI GANTC 2 cut(s) 624, 1168
HpaII CCGG 6 cut(s) 28, 38, 471, 600, 1044, 1345
HphI GGTGA 5 cut(s) 17, 202, 304, 646, 826
Hpy166II GTNNAC 1 cut(s) 1012
Hpy188I TCNGA 7 cut(s) 483, 572, 931, 1055, 1124, 1147, 1309
Hpy188III TCNNGA 7 cut(s) 386, 590, 916, 1102, 1165, 1198, 1220
Hpy8I GTNNAC 1 cut(s) 1012
Hpy99I CGWCG 2 cut(s) 1283, 1588
HpyAV CCTTC 3 cut(s) 179, 378, 1401
HpyCH4III ACNGT 4 cut(s) 562, 663, 881, 967
HpyCH4IV ACGT 3 cut(s) 117, 412, 1337
HpyCH4V TGCA 3 cut(s) 381, 790, 1472
HpyF10VI GCNNNNNNNGC 6 cut(s) 191, 272, 581, 787, 1094, 1321
HpyF3I CTNAG 3 cut(s) 439, 698, 847
HpySE526I ACGT 3 cut(s) 117, 412, 1337
Hsp92II CATG 4 cut(s) 47, 400, 1321, 1527
KspI CCGCGG 1 cut(s) 906
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 5 cut(s) 572, 899, 929, 983, 1321
Lsp1109I GCAGC 1 cut(s) 948
LweI GCATC 2 cut(s) 429, 768
MaeI CTAG 5 cut(s) 476, 809, 1130, 1232, 1563
MaeII ACGT 3 cut(s) 117, 412, 1337
MaeIII GTNAC 5 cut(s) 46, 128, 353, 663, 1352
MbiI CCGCTC 1 cut(s) 924
MflI RGATCY 3 cut(s) 404, 456, 467
MhlI GDGCHC 2 cut(s) 821, 1278
MluCI AATT 1 cut(s) 637
MlyI GAGTC 1 cut(s) 1162
MmeI TCCRAC 3 cut(s) 171, 472, 680
MroXI GAANNNNTTC 2 cut(s) 504, 1152
MseI TTAA 4 cut(s) 287, 651, 1413, 1458
MspA1I CMGCKG 1 cut(s) 905
MspI CCGG 6 cut(s) 28, 38, 471, 600, 1044, 1345
MspR9I CCNGG 1 cut(s) 38
MvnI CGCG 4 cut(s) 584, 905, 1166, 1259
MwoI GCNNNNNNNGC 6 cut(s) 191, 272, 581, 787, 1094, 1321
NciI CCSGG 1 cut(s) 38
NcoI CCATGG 1 cut(s) 1523
NheI GCTAGC 1 cut(s) 1231
NlaIII CATG 4 cut(s) 47, 400, 1321, 1527
NlaIV GGNNCC 2 cut(s) 901, 1323
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 46, 663
NruI TCGCGA 1 cut(s) 1166
PciSI GCTCTTC 1 cut(s) 510
PcsI WCGNNNNNNNCGW 1 cut(s) 1334
PdmI GAANNNNTTC 2 cut(s) 504, 1152
PfeI GAWTC 1 cut(s) 624
PinAI ACCGGT 2 cut(s) 599, 1344
PkrI GCNGC 3 cut(s) 184, 904, 938
PleI GAGTC 1 cut(s) 1162
PpsI GAGTC 1 cut(s) 1162
Ppu21I YACGTR 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 901, 1323
PspPI GGNCC 3 cut(s) 40, 1124, 1177
PsuI RGATCY 3 cut(s) 404, 456, 467
RruI TCGCGA 1 cut(s) 1166
RsaI GTAC 3 cut(s) 845, 909, 973
RsaNI GTAC 3 cut(s) 844, 908, 972
SacII CCGCGG 1 cut(s) 906
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 4 cut(s) 287, 651, 1413, 1458
SatI GCNGC 3 cut(s) 183, 903, 937
Sau96I GGNCC 3 cut(s) 40, 1124, 1177
SchI GAGTC 1 cut(s) 1162
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 821, 1278
SfaNI GCATC 2 cut(s) 429, 768
Sfr303I CCGCGG 1 cut(s) 906
SgrBI CCGCGG 1 cut(s) 906
SinI GGWCC 2 cut(s) 40, 1124
SmlI CTYRAG 2 cut(s) 590, 1100
SmoI CTYRAG 2 cut(s) 590, 1100
SnaBI TACGTA 1 cut(s) 118
SpeI ACTAGT 2 cut(s) 808, 1129
Sse9I AATT 1 cut(s) 637
SspMI CTAG 5 cut(s) 476, 809, 1130, 1232, 1563
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 2 cut(s) 1523, 1562
TaaI ACNGT 4 cut(s) 562, 663, 881, 967
TaiI ACGT 3 cut(s) 120, 415, 1340
TaqI TCGA 7 cut(s) 342, 462, 917, 1239, 1278, 1328, 1361
TaqII GACCGA 1 cut(s) 873
TasI AATT 1 cut(s) 637
TauI GCSGC 2 cut(s) 185, 905
TfiI GAWTC 1 cut(s) 624
Tru1I TTAA 4 cut(s) 287, 651, 1413, 1458
Tru9I TTAA 4 cut(s) 287, 651, 1413, 1458
TscAI CASTG 1 cut(s) 378
TseFI GTSAC 2 cut(s) 46, 663
TseI GCWGC 1 cut(s) 936
Tsp45I GTSAC 2 cut(s) 46, 663
TspDTI ATGAA 1 cut(s) 385
TspGWI ACGGA 5 cut(s) 91, 95, 236, 878, 959
TspRI CASTG 1 cut(s) 378
VpaK11BI GGWCC 2 cut(s) 40, 1124
XmaJI CCTAGG 1 cut(s) 1562
XmnI GAANNNNTTC 2 cut(s) 504, 1152
XspI CTAG 5 cut(s) 476, 809, 1130, 1232, 1563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.