FvH4_7g17470

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012768
Physical Location & Seq
Forward (+)
14826993 .. 14827859
867 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17470.t1

Sequence Viewer

Length: 867 bp
ATGGGTTGCAGCGCCGGCGTAATGTCTCTTGACCTTGCCAAATGCATACTCAGAAACACCTCCGACTCATTTGCCGTTGTAGTCAGCACTGAGATCATCACAGCCAACTCGAACTTCGGAAATGACAAGTCCATGATGCTTCCCAACTGTATTTTTCGGTGTGGTGGGGCTGCGGTTCTCTTGTCGAACAAGAGCAAGGACCGGTCACGGTCCAAATATGAGCTGGTGCACACAGTCAGGACCCATAAGGCTACTGATCAGCAAGCTTACCAATGTGCTATACAGAAGGAGGATGGCAATGGAAAGCTTTCCCTGTCAAAAGAGCTAACAACAGTTGCTGGCGACGCGCTGAAGACGAATATCGTAGCCCTAGCGCCATTGGTGCTTCCATTGTCAGAGAAGTTCTTCTACTATGTGAATTTTATAAGGAAAAAGATCTCAAAGACGAAATTGAAGCGGTACAATCCAGACTTCAAGCTCGCATTCGAGCATTTTTGTATTCATTCCGGCGGGAGGGCGGTGCTGGATGCAGTGGAGAAGAACCTGCAGCTGACGGGGTGGCATTTAGAGCCATCGAGGATGTCATTGTACCGTTTTGGGAACACGTCGAGTAGTTCGCTATGGTACGAGCTAGCCTACTTGGAGGCCAAGGGTCGGATCAGACGAGGGGATCGAGTTTGGCAAATTGCATTCGGATCAGGTTTCAAGTGCAACAGTACGGTTTGGCGGGCACTTAGGCCGGTAAGAGAGGGTGACGCACTTGGAAACCCTTGGACAGACTCCATAATAGGTACCCCGTCAAGGTTCAAATTGGCTCCACTCCATAATAGACACATGGAATTACAAAGACTTGGGTTGTTTATCTAA

Protein Analysis

289

Amino Acids

32.29

Weight (kDa)

9.72

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 1 - 145 3.6e-60 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 163 - 243 6.9e-11 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 165 - 243 6.3e-09 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04220 AT5G43760
fragaria_vesca FvH4_4g01980 FvH4_7g17470
malus_domestica MD13G1203100.v1.1
prunus_persica Prupe.1G025600_v2.0.a1
pyrus_communis pycom07g15420 pycom13g17640 pycom16g17200
rosa_chinensis RchiOBHm_Chr4g0388941
rosa_laevigata RLG00000010005
rosa_multiflora Rmu_sc0005486.1_g000002
rosa_roxburghii Rroxscaffold_5G00335260
rosa_rugosa Rorug03G0321500
rosa_samantha Rh4AG025900 Rh4BG019200 Rh4DG019700
rosa_wichuraiana Rw4G001870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
Acc36I ACCTGC 1 cut(s) 552
Acc65I GGTACC 1 cut(s) 791
AccB1I GGYRCC 1 cut(s) 791
AccII CGCG 1 cut(s) 347
AciI CCGC 5 cut(s) 173, 457, 510, 518, 727
AclWI GGATC 3 cut(s) 665, 678, 703
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 5 cut(s) 461, 590, 626, 718, 793
AfiI CCNNNNNNNGG 3 cut(s) 513, 654, 801
AflIII ACRYGT 1 cut(s) 603
AgeI ACCGGT 1 cut(s) 201
AgsI TTSAA 4 cut(s) 454, 475, 706, 808
AjiI CACGTC 1 cut(s) 606
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 7 cut(s) 223, 266, 307, 325, 478, 550, 631
AluI AGCT 7 cut(s) 223, 266, 307, 325, 478, 550, 631
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 30
Alw44I GTGCAC 1 cut(s) 227
AlwI GGATC 3 cut(s) 665, 678, 703
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 2 cut(s) 645, 737
ApaLI GTGCAC 1 cut(s) 227
ApeKI GCWGC 3 cut(s) 9, 170, 547
ApoI RAATTY 1 cut(s) 418
AsiGI ACCGGT 1 cut(s) 201
Asp700I GAANNNNTTC 2 cut(s) 307, 404
Asp718I GGTACC 1 cut(s) 791
AspLEI GCGC 3 cut(s) 14, 349, 376
AspS9I GGNCC 3 cut(s) 199, 210, 240
AsuHPI GGTGA 1 cut(s) 764
AsuNHI GCTAGC 1 cut(s) 631
AvaII GGWCC 3 cut(s) 199, 210, 240
BaeGI GKGCMC 2 cut(s) 231, 733
BanI GGYRCC 1 cut(s) 791
BarI GAAGNNNNNNTAC 2 cut(s) 392, 424
BbsI GAAGAC 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 21, 157, 559
BccI CCATC 2 cut(s) 287, 580
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 2 cut(s) 371, 632
BfmI CTRYAG 1 cut(s) 545
BfoI RGCGCY 2 cut(s) 15, 377
BfuAI ACCTGC 1 cut(s) 552
BglII AGATCT 1 cut(s) 435
BisI GCNGC 3 cut(s) 10, 171, 548
BlsI GCNGC 3 cut(s) 11, 172, 549
Bme18I GGWCC 3 cut(s) 199, 210, 240
BmgBI CACGTC 1 cut(s) 606
BmgT120I GGNCC 3 cut(s) 199, 210, 240
BmiI GGNNCC 3 cut(s) 242, 793, 816
BmsI GCATC 2 cut(s) 126, 517
BmtI GCTAGC 1 cut(s) 635
BpiI GAAGAC 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 648, 770
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 3 cut(s) 513, 654, 801
Bse118I RCCGGY 3 cut(s) 14, 201, 739
Bse3DI GCAATG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 648, 770
BseGI GGATG 3 cut(s) 298, 532, 585
BseLI CCNNNNNNNGG 3 cut(s) 513, 654, 801
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 2 cut(s) 64, 81
BseSI GKGCMC 2 cut(s) 231, 733
BseXI GCAGC 3 cut(s) 21, 157, 559
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 2 cut(s) 647, 739
BshNI GGYRCC 1 cut(s) 791
BshTI ACCGGT 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 4 cut(s) 15, 202, 507, 740
BslI CCNNNNNNNGG 3 cut(s) 513, 654, 801
BsmAI GTCTC 1 cut(s) 30
BsmI GAATGC 2 cut(s) 482, 689
BsnI GGCC 2 cut(s) 647, 739
Bsp1286I GDGCHC 2 cut(s) 231, 733
Bsp143I GATC 6 cut(s) 93, 256, 435, 657, 670, 695
BspACI CCGC 5 cut(s) 173, 457, 510, 518, 727
BspANI GGCC 2 cut(s) 647, 739
BspCNI CTCAG 2 cut(s) 63, 82
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 3 cut(s) 242, 793, 816
BspMAI CTGCAG 1 cut(s) 549
BspMI ACCTGC 1 cut(s) 552
BspOI GCTAGC 1 cut(s) 635
BspPI GGATC 3 cut(s) 665, 678, 703
BspT107I GGYRCC 1 cut(s) 791
BsrDI GCAATG 1 cut(s) 304
BsrFI RCCGGY 3 cut(s) 14, 201, 739
BssAI RCCGGY 3 cut(s) 14, 201, 739
BssECI CCNNGG 2 cut(s) 648, 770
BssMI GATC 6 cut(s) 93, 256, 435, 657, 670, 695
BssT1I CCWWGG 2 cut(s) 648, 770
Bst4CI ACNGT 7 cut(s) 149, 210, 235, 334, 593, 716, 721
BstC8I GCNNGC 6 cut(s) 16, 264, 340, 480, 633, 729
BstDEI CTNAG 3 cut(s) 50, 90, 734
BstF5I GGATG 3 cut(s) 298, 532, 585
BstFNI CGCG 1 cut(s) 347
BstH2I RGCGCY 2 cut(s) 15, 377
BstHHI GCGC 3 cut(s) 14, 349, 376
BstKTI GATC 6 cut(s) 96, 259, 438, 660, 673, 698
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 6 cut(s) 93, 256, 435, 657, 670, 695
BstMWI GCNNNNNNNGC 4 cut(s) 15, 344, 382, 568
BstSFI CTRYAG 1 cut(s) 545
BstSLI GKGCMC 2 cut(s) 231, 733
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 3 cut(s) 21, 157, 559
BstV2I GAAGAC 1 cut(s) 359
BstX2I RGATCY 1 cut(s) 435
BstYI RGATCY 1 cut(s) 435
BsuRI GGCC 2 cut(s) 647, 739
BtrI CACGTC 1 cut(s) 606
BtsCI GGATG 3 cut(s) 298, 532, 585
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 2 cut(s) 87, 537
BveI ACCTGC 1 cut(s) 552
Cac8I GCNNGC 6 cut(s) 16, 264, 340, 480, 633, 729
CaiI CAGNNNCTG 1 cut(s) 338
CfoI GCGC 3 cut(s) 14, 349, 376
Cfr10I RCCGGY 3 cut(s) 14, 201, 739
Cfr13I GGNCC 3 cut(s) 199, 210, 240
CseI GACGC 2 cut(s) 353, 764
Csp6I GTAC 5 cut(s) 460, 589, 625, 717, 792
CspAI ACCGGT 1 cut(s) 201
CviAII CATG 2 cut(s) 133, 835
CviQI GTAC 5 cut(s) 460, 589, 625, 717, 792
DdeI CTNAG 3 cut(s) 50, 90, 734
DpnI GATC 6 cut(s) 95, 258, 437, 659, 672, 697
DpnII GATC 6 cut(s) 93, 256, 435, 657, 670, 695
Eco130I CCWWGG 2 cut(s) 648, 770
Eco47I GGWCC 3 cut(s) 199, 210, 240
Eco57I CTGAAG 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 240
EcoT14I CCWWGG 2 cut(s) 648, 770
EcoT22I ATGCAT 1 cut(s) 47
ErhI CCWWGG 2 cut(s) 648, 770
FaeI CATG 2 cut(s) 136, 838
FatI CATG 2 cut(s) 132, 834
FauI CCCGC 2 cut(s) 503, 720
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 3 cut(s) 10, 171, 548
FokI GGATG 3 cut(s) 305, 539, 592
Fsp4HI GCNGC 3 cut(s) 10, 171, 548
FspBI CTAG 2 cut(s) 371, 632
GlaI GCGC 3 cut(s) 13, 348, 375
GluI GCNGC 3 cut(s) 10, 171, 548
HaeII RGCGCY 2 cut(s) 15, 377
HaeIII GGCC 2 cut(s) 647, 739
HapII CCGG 4 cut(s) 15, 202, 507, 740
HgaI GACGC 2 cut(s) 353, 764
HhaI GCGC 3 cut(s) 14, 349, 376
Hin1II CATG 2 cut(s) 136, 838
Hin6I GCGC 3 cut(s) 12, 347, 374
HinP1I GCGC 3 cut(s) 12, 347, 374
HindIII AAGCTT 2 cut(s) 264, 305
HinfI GANTC 2 cut(s) 65, 779
HpaII CCGG 4 cut(s) 15, 202, 507, 740
HphI GGTGA 1 cut(s) 764
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 7 cut(s) 53, 64, 119, 397, 657, 662, 695
Hpy188III TCNNGA 3 cut(s) 29, 238, 467
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 2 cut(s) 347, 610
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 7 cut(s) 149, 210, 235, 334, 593, 716, 721
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 7 cut(s) 9, 45, 229, 530, 547, 689, 711
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 344, 382, 568
HpyF3I CTNAG 3 cut(s) 50, 90, 734
HpySE526I ACGT 1 cut(s) 605
Hsp92II CATG 2 cut(s) 136, 838
HspAI GCGC 3 cut(s) 12, 347, 374
KpnI GGTACC 1 cut(s) 795
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 6 cut(s) 93, 256, 435, 657, 670, 695
LmnI GCTCC 1 cut(s) 820
Lsp1109I GCAGC 3 cut(s) 21, 157, 559
LweI GCATC 2 cut(s) 126, 517
MaeI CTAG 2 cut(s) 371, 632
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 2 cut(s) 204, 752
MalI GATC 6 cut(s) 95, 258, 437, 659, 672, 697
MboI GATC 6 cut(s) 93, 256, 435, 657, 670, 695
MboII GAAGA 3 cut(s) 364, 397, 550
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 2 cut(s) 231, 733
MluCI AATT 5 cut(s) 418, 449, 684, 809, 839
MlyI GAGTC 2 cut(s) 59, 773
MmeI TCCRAC 2 cut(s) 87, 635
MnlI CCTC 7 cut(s) 70, 283, 507, 570, 637, 659, 742
Mph1103I ATGCAT 1 cut(s) 47
MreI CGCCGGCG 1 cut(s) 14
MroNI GCCGGC 1 cut(s) 14
MroXI GAANNNNTTC 2 cut(s) 307, 404
MspA1I CMGCKG 1 cut(s) 550
MspI CCGG 4 cut(s) 15, 202, 507, 740
Mva1269I GAATGC 2 cut(s) 482, 689
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 4 cut(s) 15, 344, 382, 568
NaeI GCCGGC 1 cut(s) 16
NdeII GATC 6 cut(s) 93, 256, 435, 657, 670, 695
NgoMIV GCCGGC 1 cut(s) 14
NheI GCTAGC 1 cut(s) 631
NlaIII CATG 2 cut(s) 136, 838
NlaIV GGNNCC 3 cut(s) 242, 793, 816
NmuCI GTSAC 2 cut(s) 204, 752
NsiI ATGCAT 1 cut(s) 47
PcsI WCGNNNNNNNCGW 2 cut(s) 661, 670
PctI GAATGC 2 cut(s) 482, 689
PdiI GCCGGC 1 cut(s) 16
PdmI GAANNNNTTC 2 cut(s) 307, 404
PinAI ACCGGT 1 cut(s) 201
PkrI GCNGC 3 cut(s) 11, 172, 549
PleI GAGTC 2 cut(s) 59, 773
PpsI GAGTC 2 cut(s) 59, 773
PpuMI RGGWCCY 1 cut(s) 240
PsiI TTATAA 1 cut(s) 425
Psp5II RGGWCCY 1 cut(s) 240
PspN4I GGNNCC 3 cut(s) 242, 793, 816
PspPI GGNCC 3 cut(s) 199, 210, 240
PspPPI RGGWCCY 1 cut(s) 240
PstI CTGCAG 1 cut(s) 549
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 1 cut(s) 435
PvuII CAGCTG 1 cut(s) 550
RsaI GTAC 5 cut(s) 461, 590, 626, 718, 793
RsaNI GTAC 5 cut(s) 460, 589, 625, 717, 792
SatI GCNGC 3 cut(s) 10, 171, 548
Sau3AI GATC 6 cut(s) 93, 256, 435, 657, 670, 695
Sau96I GGNCC 3 cut(s) 199, 210, 240
SchI GAGTC 2 cut(s) 59, 773
SduI GDGCHC 2 cut(s) 231, 733
SfaNI GCATC 2 cut(s) 126, 517
SfcI CTRYAG 1 cut(s) 545
SgrAI CRCCGGYG 1 cut(s) 14
SinI GGWCC 3 cut(s) 199, 210, 240
Sse9I AATT 5 cut(s) 418, 449, 684, 809, 839
SsiI CCGC 5 cut(s) 173, 457, 510, 518, 727
SspMI CTAG 2 cut(s) 371, 632
StyI CCWWGG 2 cut(s) 648, 770
TaaI ACNGT 7 cut(s) 149, 210, 235, 334, 593, 716, 721
TaiI ACGT 1 cut(s) 608
TaqI TCGA 6 cut(s) 110, 185, 486, 575, 608, 673
TasI AATT 5 cut(s) 418, 449, 684, 809, 839
TscAI CASTG 2 cut(s) 94, 537
TseFI GTSAC 2 cut(s) 204, 752
TseI GCWGC 3 cut(s) 9, 170, 547
Tsp45I GTSAC 2 cut(s) 204, 752
TspDTI ATGAA 1 cut(s) 491
TspRI CASTG 2 cut(s) 94, 537
VneI GTGCAC 1 cut(s) 227
VpaK11BI GGWCC 3 cut(s) 199, 210, 240
XapI RAATTY 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmnI GAANNNNTTC 2 cut(s) 307, 404
XspI CTAG 2 cut(s) 371, 632
Zsp2I ATGCAT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.