Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012768

Physical Location & Seq

Genomic Coordinates Reverse (-)

2688929 .. 2691697

Gene Structure 2769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGACTACACAAGCGCCGGAGACGTCGTCGTCGTCGTCATCCTCGCCCTCGCAGGAAAACGATGTCGATCATGTTCAAGTTACTACTAAGAGAGTACTTCCGAATTTTCTTCTATCCGTGAGGCTCAAGTACGTGAAGCTCGGTTACCATTACCTGATCTCCAACGCCATGTACATCTTACTCGTCCCGCTCCTTGCGGCGGCATTTGCTCATCTCTCAACCCTAACCGTCGAGGACTTGGCTCGTTTGTGGGACCAGCTCAAGTTCAACTTCGTCTCCGTCACCGTCTGCTCCAGTCTCATAGTCTTCTTGACCACCGTCTACTTCACCACCCGGCCGAGGAAGGTGTACTTGGTTAACTTTGCGTGTTACAAGCCCGAGGACGAGCGCATGTGCACTAGGGAGATCTTCATGCACAGGTCCAAGCTGACGGGGAGCTTCTCCGACGAGAACCTGGCGTTCCAGCAAAAGATTCTGGAGCGCTCTGGCCTCGGACAGAACACGTATATGCCCGAGGCAGTGCTGAGGGTTCCGCCAAATCCGTGTATGGAGGAGGCCAGGAAGGAGGCGGAGATGGTGATGTTTGGGGCTATTGATGAGCTGCTGGAGAAGACGGGAGTGAAGCCTAAGGATATTGGGATTCTGGTGGTGAATTGCAGCTTGTTCAATCCAACGCCGTCTCTGTCCTCCATGGTTGTGAATCATTACAAGCTTAGAGGGAATATTGTGAGCTACAATCTTGGTGGGATGGGTTGCAGTGCTGGCCTCATTTCTATTGATCTTGCCAAGCAGCTTCTCCAGGTGCACCCCAACTCATATGCCCTAGTGGTCAGCATGGAGAACATAACCCTCAATTGGTACTTTGGCAATGACCGCTCTATGCTCCTCTCGAACTGCCTCTTCCGACTTGGTGGTGCTGCCATCCTCCTCTCCAACCGCTCCTCTGACCGCCGCCGCTCCAAGTACCAACTCATGCACACCATTCGCACCCACAAAGGCTCGGACGACAAGGCGTATGGCTGTGTTTTCCAAAAGGAAGATGATACCAAAAGAATCGGTGTAGCCCTCTCAAAAGACCTAATGGCCGTAGCCGGAGAGGCCCTCAAAGCGAACATCACTACCCTGGGCCCTATAGTCCTACCCATGTCAGAACAACTCCTATTTTTTGCTACTTTGGTAGCAAGAAAAGTGTTCAAGATGAAGAAGATCATACCCTACATCCCTGATTTCAAGTTGGCATTCGAGCACTTCTGTATCCATGCTGGTGGGAGAGCAGTGTTGGATGAGATGGAGAAGAACCTTGAGCTCACTGATTGGCATATGGAGCCTTCAAGAATGACACTTAACAGGTTTGGGAACACTTCTAGTAGTTCATTGTGGTATGAACTGGCTTACTCTGAGGCTAAGGGAAGAGTGAGAAAGGGACATAGGATGTGGCAGATTGCATTCGGTTCAGGGTTCAAGTGTAACAGTGCTGTGTGGAAGGCATTGAAGACTGTCAATCCAGCAAAGGAGAAGAATCCTTGGATTGATGAGATTCATCTGTTTCCTGTTGAGGTGCCTAAAGTGGCATCCATTAAAATTTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009611 GO:0009628 GO:0009698 GO:0009699 GO:0009922 GO:0009987 GO:0010345 GO:0016740 GO:0016746 GO:0016747 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

530

Amino Acids

59.68

Weight (kDa)

9.18

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	108 - 397	5.4e-144	FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C	PF08541	415 - 495	1e-09	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C	PF02797	417 - 491	6e-08	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04220 AT5G43760
fragaria_vesca	FvH4_4g01980 FvH4_7g17470
malus_domestica	MD13G1203100.v1.1
prunus_persica	Prupe.1G025600_v2.0.a1
pyrus_communis	pycom07g15420 pycom13g17640 pycom16g17200
rosa_chinensis	RchiOBHm_Chr4g0388941
rosa_laevigata	RLG00000010005
rosa_multiflora	Rmu_sc0005486.1_g000002
rosa_roxburghii	Rroxscaffold_5G00335260
rosa_rugosa	Rorug03G0321500
rosa_samantha	Rh4AG025900 Rh4BG019200 Rh4DG019700
rosa_wichuraiana	Rw4G001870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AatII	GACGTC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	1558
AccBSI	CCGCTC	4 cut(s)	190, 876, 939, 957
AccI	GTMKAC	1 cut(s)	321
AcoI	YGGCCR	2 cut(s)	335, 1083
AcsI	RAATTY	2 cut(s)	103, 1581
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	6 cut(s)	96, 131, 173, 350, 860, 965
AfeI	AGCGCT	1 cut(s)	482
AfiI	CCNNNNNNNGG	3 cut(s)	199, 339, 855
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	8 cut(s)	77, 268, 667, 1195, 1231, 1332, 1462, 1492
AjnI	CCWGG	4 cut(s)	453, 557, 798, 1122
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
Alw21I	GWGCWC	4 cut(s)	398, 807, 1248, 1308
Alw26I	GTCTC	4 cut(s)	14, 280, 302, 684
Alw44I	GTGCAC	2 cut(s)	394, 803
Ama87I	CYCGRG	2 cut(s)	377, 512
Aor51HI	AGCGCT	1 cut(s)	482
AoxI	GGCC	7 cut(s)	335, 487, 555, 763, 1083, 1098, 1126
ApaI	GGGCCC	1 cut(s)	1130
ApaLI	GTGCAC	2 cut(s)	394, 803
ApeKI	GCWGC	4 cut(s)	601, 657, 790, 917
ApoI	RAATTY	2 cut(s)	103, 1581
AspLEI	GCGC	3 cut(s)	16, 390, 483
AspS9I	GGNCC	5 cut(s)	253, 420, 1099, 1126, 1127
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	4 cut(s)	274, 319, 589, 661
AvaI	CYCGRG	2 cut(s)	377, 512
AvaII	GGWCC	2 cut(s)	253, 420
AxyI	CCTNAGG	1 cut(s)	627
BaeGI	GKGCMC	3 cut(s)	398, 807, 1130
BaeI	ACNNNNGTAYC	2 cut(s)	1237, 1270
BanI	GGYRCC	1 cut(s)	1558
BanII	GRGCYC	2 cut(s)	1130, 1308
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BbsI	GAAGAC	3 cut(s)	298, 617, 1499
Bbv12I	GWGCWC	4 cut(s)	398, 807, 1248, 1308
BbvCI	CCTCAGC	1 cut(s)	524
BbvI	GCAGC	4 cut(s)	588, 669, 802, 904
BccI	CCATC	4 cut(s)	568, 742, 929, 1282
BceAI	ACGGC	2 cut(s)	661, 1070
BcgI	CGANNNNNNTGC	2 cut(s)	965, 999
BciT130I	CCWGG	4 cut(s)	455, 559, 800, 1124
BciVI	GTATCC	1 cut(s)	1265
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	4 cut(s)	14, 280, 302, 684
BfaI	CTAG	3 cut(s)	399, 824, 1365
BfmI	CTRYAG	1 cut(s)	1131
BfoI	RGCGCY	2 cut(s)	17, 484
BfuI	GTATCC	1 cut(s)	1265
BglI	GCCNNNNNGGC	1 cut(s)	1097
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	8 cut(s)	198, 201, 602, 658, 791, 918, 952, 955
BlsI	GCNGC	8 cut(s)	199, 202, 603, 659, 792, 919, 953, 956
BmcAI	AGTACT	1 cut(s)	96
Bme1390I	CCNGG	5 cut(s)	334, 455, 559, 800, 1124
Bme18I	GGWCC	2 cut(s)	253, 420
BmeT110I	CYCGRG	2 cut(s)	377, 512
BmgT120I	GGNCC	5 cut(s)	253, 420, 1099, 1126, 1127
BmiI	GGNNCC	5 cut(s)	254, 531, 1128, 1326, 1560
BmrFI	CCNGG	5 cut(s)	334, 455, 559, 800, 1124
BmsI	GCATC	1 cut(s)	1580
BoxI	GACNNNNGTC	1 cut(s)	317
BpiI	GAAGAC	3 cut(s)	298, 617, 1499
BplI	GAGNNNNNCTC	2 cut(s)	1086, 1118
BpmI	CTGGAG	4 cut(s)	277, 497, 626, 782
Bpu10I	CCTNAGC	2 cut(s)	524, 1404
BpuEI	CTTGAG	3 cut(s)	110, 245, 1322
BpuMI	CCSGG	1 cut(s)	334
BsaAI	YACGTR	2 cut(s)	133, 504
BsaBI	GATNNNNATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	8 cut(s)	338, 378, 490, 513, 690, 1122, 1123, 1523
BsaXI	ACNNNNNCTCC	6 cut(s)	11, 41, 143, 173, 260, 290
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 339, 855
Bse1I	ACTGG	2 cut(s)	294, 1392
Bse21I	CCTNAGG	1 cut(s)	627
Bse3DI	GCAATG	1 cut(s)	874
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	4 cut(s)	455, 559, 800, 1124
BseDI	CCNNGG	8 cut(s)	338, 378, 490, 513, 690, 1122, 1123, 1523
BseGI	GGATG	7 cut(s)	38, 753, 921, 1218, 1288, 1437, 1571
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	3 cut(s)	199, 339, 855
BseMI	GCAATG	1 cut(s)	874
BseMII	CTCAG	2 cut(s)	515, 1389
BseNI	ACTGG	2 cut(s)	294, 1392
BseRI	GAGGAG	4 cut(s)	566, 875, 917, 931
BseSI	GKGCMC	3 cut(s)	398, 807, 1130
BseX3I	CGGCCG	1 cut(s)	335
BseXI	GCAGC	4 cut(s)	588, 669, 802, 904
Bsh1285I	CGRYCG	1 cut(s)	338
BshFI	GGCC	7 cut(s)	337, 489, 557, 765, 1085, 1100, 1128
BshNI	GGYRCC	1 cut(s)	1558
BsiEI	CGRYCG	1 cut(s)	338
BsiHKAI	GWGCWC	4 cut(s)	398, 807, 1248, 1308
BsiHKCI	CYCGRG	2 cut(s)	377, 512
BsiSI	CCGG	3 cut(s)	17, 334, 1092
BslFI	GGGAC	3 cut(s)	170, 266, 1437
BslI	CCNNNNNNNGG	3 cut(s)	199, 339, 855
BsmAI	GTCTC	4 cut(s)	14, 280, 302, 684
BsmBI	CGTCTC	3 cut(s)	14, 280, 684
BsmFI	GGGAC	3 cut(s)	170, 266, 1437
BsmI	GAATGC	2 cut(s)	1238, 1445
BsnI	GGCC	7 cut(s)	337, 489, 557, 765, 1085, 1100, 1128
BsoBI	CYCGRG	2 cut(s)	377, 512
Bsp120I	GGGCCC	1 cut(s)	1126
Bsp1286I	GDGCHC	5 cut(s)	398, 807, 1130, 1248, 1308
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	5 cut(s)	67, 156, 405, 778, 1206
Bsp19I	CCATGG	1 cut(s)	690
BspANI	GGCC	7 cut(s)	337, 489, 557, 765, 1085, 1100, 1128
BspCNI	CTCAG	2 cut(s)	516, 1390
BspLI	GGNNCC	5 cut(s)	254, 531, 1128, 1326, 1560
BspT107I	GGYRCC	1 cut(s)	1558
BsrBI	CCGCTC	4 cut(s)	190, 876, 939, 957
BsrDI	GCAATG	1 cut(s)	874
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	294, 1392
BssECI	CCNNGG	8 cut(s)	338, 378, 490, 513, 690, 1122, 1123, 1523
BssMI	GATC	5 cut(s)	67, 156, 405, 778, 1206
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	2 cut(s)	690, 1523
Bst2UI	CCWGG	4 cut(s)	455, 559, 800, 1124
Bst4CI	ACNGT	5 cut(s)	229, 286, 319, 1472, 1498
Bst6I	CTCTTC	2 cut(s)	905, 1405
BstACI	GRCGYC	1 cut(s)	23
BstAUI	TGTACA	1 cut(s)	171
BstBAI	YACGTR	2 cut(s)	133, 504
BstC8I	GCNNGC	1 cut(s)	763
BstDEI	CTNAG	6 cut(s)	87, 524, 627, 713, 1398, 1404
BstDSI	CCRYGG	1 cut(s)	690
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	7 cut(s)	38, 753, 921, 1218, 1288, 1437, 1571
BstH2I	RGCGCY	2 cut(s)	17, 484
BstHHI	GCGC	3 cut(s)	16, 390, 483
BstKTI	GATC	5 cut(s)	70, 159, 408, 781, 1209
BstMAI	GTCTC	4 cut(s)	14, 280, 302, 684
BstMBI	GATC	5 cut(s)	67, 156, 405, 778, 1206
BstMCI	CGRYCG	1 cut(s)	338
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 762, 873, 1097, 1106, 1324
BstNI	CCWGG	4 cut(s)	455, 559, 800, 1124
BstNSI	RCATGY	1 cut(s)	394
BstPAI	GACNNNNGTC	1 cut(s)	317
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	5 cut(s)	332, 453, 557, 798, 1122
BstSFI	CTRYAG	1 cut(s)	1131
BstSLI	GKGCMC	3 cut(s)	398, 807, 1130
BstV1I	GCAGC	4 cut(s)	588, 669, 802, 904
BstV2I	GAAGAC	3 cut(s)	298, 617, 1499
BstX2I	RGATCY	1 cut(s)	405
BstXI	CCANNNNNNTGG	1 cut(s)	1265
BstYI	RGATCY	1 cut(s)	405
BstZI	CGGCCG	1 cut(s)	335
Bsu36I	CCTNAGG	1 cut(s)	627
BsuI	GTATCC	1 cut(s)	1265
BsuRI	GGCC	7 cut(s)	337, 489, 557, 765, 1085, 1100, 1128
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	7 cut(s)	38, 753, 921, 1218, 1288, 1437, 1571
BtsI	GCAGTG	3 cut(s)	525, 763, 1281
BtsIMutI	CAGTG	5 cut(s)	525, 763, 1281, 1308, 1477
Cac8I	GCNNGC	1 cut(s)	763
CfoI	GCGC	3 cut(s)	16, 390, 483
Cfr13I	GGNCC	5 cut(s)	253, 420, 1099, 1126, 1127
Csp6I	GTAC	6 cut(s)	95, 130, 172, 349, 859, 964
CspCI	CAANNNNNGTGG	2 cut(s)	724, 759
CviAII	CATG	9 cut(s)	71, 169, 391, 412, 691, 835, 973, 1144, 1259
CviQI	GTAC	6 cut(s)	95, 130, 172, 349, 859, 964
DdeI	CTNAG	6 cut(s)	87, 524, 627, 713, 1398, 1404
DpnI	GATC	5 cut(s)	69, 158, 407, 780, 1208
DpnII	GATC	5 cut(s)	67, 156, 405, 778, 1206
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	2 cut(s)	335, 1083
EagI	CGGCCG	1 cut(s)	335
Eam1104I	CTCTTC	2 cut(s)	905, 1405
EarI	CTCTTC	2 cut(s)	905, 1405
EciI	GGCGGA	2 cut(s)	522, 584
Ecl136II	GAGCTC	1 cut(s)	1306
EclXI	CGGCCG	1 cut(s)	335
Eco130I	CCWWGG	2 cut(s)	690, 1523
Eco24I	GRGCYC	2 cut(s)	1130, 1308
Eco47I	GGWCC	2 cut(s)	253, 420
Eco47III	AGCGCT	1 cut(s)	482
Eco52I	CGGCCG	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	1306
Eco81I	CCTNAGG	1 cut(s)	627
Eco88I	CYCGRG	2 cut(s)	377, 512
Eco91I	GGTNACC	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	1306
EcoO109I	RGGNCCY	2 cut(s)	1099, 1127
EcoO65I	GGTNACC	1 cut(s)	143
EcoRII	CCWGG	4 cut(s)	453, 557, 798, 1122
EcoT14I	CCWWGG	2 cut(s)	690, 1523
EcoT38I	GRGCYC	2 cut(s)	1130, 1308
ErhI	CCWWGG	2 cut(s)	690, 1523
Esp3I	CGTCTC	3 cut(s)	14, 280, 684
FaeI	CATG	9 cut(s)	74, 172, 394, 415, 694, 838, 976, 1147, 1262
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 335, 367
FaqI	GGGAC	3 cut(s)	170, 266, 1437
FatI	CATG	9 cut(s)	70, 168, 390, 411, 690, 834, 972, 1143, 1258
FauI	CCCGC	1 cut(s)	195
FauNDI	CATATG	2 cut(s)	817, 1320
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	8 cut(s)	198, 201, 602, 658, 791, 918, 952, 955
FokI	GGATG	7 cut(s)	25, 760, 908, 1205, 1295, 1444, 1558
FriOI	GRGCYC	2 cut(s)	1130, 1308
Fsp4HI	GCNGC	8 cut(s)	198, 201, 602, 658, 791, 918, 952, 955
FspBI	CTAG	3 cut(s)	399, 824, 1365
GlaI	GCGC	3 cut(s)	15, 389, 482
GluI	GCNGC	8 cut(s)	198, 201, 602, 658, 791, 918, 952, 955
GsuI	CTGGAG	4 cut(s)	277, 497, 626, 782
HaeII	RGCGCY	2 cut(s)	17, 484
HaeIII	GGCC	7 cut(s)	337, 489, 557, 765, 1085, 1100, 1128
HapII	CCGG	3 cut(s)	17, 334, 1092
HhaI	GCGC	3 cut(s)	16, 390, 483
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	9 cut(s)	74, 172, 394, 415, 694, 838, 976, 1147, 1262
Hin6I	GCGC	3 cut(s)	14, 388, 481
HinP1I	GCGC	3 cut(s)	14, 388, 481
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	6 cut(s)	472, 640, 700, 1053, 1519, 1537
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	3 cut(s)	17, 334, 1092
HphI	GGTGA	4 cut(s)	274, 319, 589, 661
Hpy166II	GTNNAC	5 cut(s)	322, 349, 358, 396, 805
Hpy188I	TCNGA	8 cut(s)	102, 445, 494, 905, 946, 1003, 1150, 1399
Hpy188III	TCNNGA	5 cut(s)	310, 476, 889, 1195, 1332
Hpy8I	GTNNAC	5 cut(s)	322, 349, 358, 396, 805
Hpy99I	CGWCG	6 cut(s)	28, 31, 34, 37, 233, 449
HpyAV	CCTTC	4 cut(s)	337, 556, 1338, 1477
HpyCH4III	ACNGT	5 cut(s)	229, 286, 319, 1472, 1498
HpyCH4IV	ACGT	3 cut(s)	23, 132, 503
HpyCH4V	TGCA	7 cut(s)	396, 415, 657, 756, 805, 976, 1445
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 762, 873, 1097, 1106, 1324
HpyF3I	CTNAG	6 cut(s)	87, 524, 627, 713, 1398, 1404
HpySE526I	ACGT	3 cut(s)	23, 132, 503
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	9 cut(s)	74, 172, 394, 415, 694, 838, 976, 1147, 1262
HspAI	GCGC	3 cut(s)	14, 388, 481
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	67, 156, 405, 778, 1206
LmnI	GCTCC	8 cut(s)	195, 296, 435, 478, 888, 944, 962, 1324
Lsp1109I	GCAGC	4 cut(s)	588, 669, 802, 904
LweI	GCATC	1 cut(s)	1580
MaeI	CTAG	3 cut(s)	399, 824, 1365
MaeII	ACGT	3 cut(s)	23, 132, 503
MaeIII	GTNAC	5 cut(s)	79, 143, 280, 368, 1466
MalI	GATC	5 cut(s)	69, 158, 407, 780, 1208
MbiI	CCGCTC	4 cut(s)	190, 876, 939, 957
MboI	GATC	5 cut(s)	67, 156, 405, 778, 1206
MfeI	CAATTG	1 cut(s)	853
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	5 cut(s)	398, 807, 1130, 1248, 1308
MluCI	AATT	4 cut(s)	103, 652, 853, 1581
MmeI	TCCRAC	6 cut(s)	186, 468, 695, 928, 957, 1260
MseI	TTAA	4 cut(s)	357, 1344, 1578, 1591
MslI	CAYNNNNRTG	3 cut(s)	506, 695, 1263
MspI	CCGG	3 cut(s)	17, 334, 1092
MspR9I	CCNGG	5 cut(s)	334, 455, 559, 800, 1124
MunI	CAATTG	1 cut(s)	853
Mva1269I	GAATGC	2 cut(s)	1238, 1445
MvaI	CCWGG	4 cut(s)	455, 559, 800, 1124
MwoI	GCNNNNNNNGC	6 cut(s)	206, 762, 873, 1097, 1106, 1324
NciI	CCSGG	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	690
NdeI	CATATG	2 cut(s)	817, 1320
NdeII	GATC	5 cut(s)	67, 156, 405, 778, 1206
NlaIII	CATG	9 cut(s)	74, 172, 394, 415, 694, 838, 976, 1147, 1262
NlaIV	GGNNCC	5 cut(s)	254, 531, 1128, 1326, 1560
NmeAIII	GCCGAG	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	394
PasI	CCCWGGG	1 cut(s)	1123
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 32
PctI	GAATGC	2 cut(s)	1238, 1445
PfeI	GAWTC	6 cut(s)	472, 640, 700, 1053, 1519, 1537
PflFI	GACNNNGTC	1 cut(s)	25
PkrI	GCNGC	8 cut(s)	199, 202, 603, 659, 792, 919, 953, 956
Ppu21I	YACGTR	2 cut(s)	133, 504
PshAI	GACNNNNGTC	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	1308
Psp6I	CCWGG	4 cut(s)	453, 557, 798, 1122
PspEI	GGTNACC	1 cut(s)	143
PspGI	CCWGG	4 cut(s)	453, 557, 798, 1122
PspN4I	GGNNCC	5 cut(s)	254, 531, 1128, 1326, 1560
PspOMI	GGGCCC	1 cut(s)	1126
PspPI	GGNCC	5 cut(s)	253, 420, 1099, 1126, 1127
PsuI	RGATCY	1 cut(s)	405
PsyI	GACNNNGTC	1 cut(s)	25
RsaI	GTAC	6 cut(s)	96, 131, 173, 350, 860, 965
RsaNI	GTAC	6 cut(s)	95, 130, 172, 349, 859, 964
RseI	CAYNNNNRTG	3 cut(s)	506, 695, 1263
SacI	GAGCTC	1 cut(s)	1308
SaqAI	TTAA	4 cut(s)	357, 1344, 1578, 1591
SatI	GCNGC	8 cut(s)	198, 201, 602, 658, 791, 918, 952, 955
Sau3AI	GATC	5 cut(s)	67, 156, 405, 778, 1206
Sau96I	GGNCC	5 cut(s)	253, 420, 1099, 1126, 1127
ScaI	AGTACT	1 cut(s)	96
ScrFI	CCNGG	5 cut(s)	334, 455, 559, 800, 1124
SduI	GDGCHC	5 cut(s)	398, 807, 1130, 1248, 1308
SfaNI	GCATC	1 cut(s)	1580
SfcI	CTRYAG	1 cut(s)	1131
SinI	GGWCC	2 cut(s)	253, 420
SmiMI	CAYNNNNRTG	3 cut(s)	506, 695, 1263
SmlI	CTYRAG	3 cut(s)	125, 260, 1301
SmoI	CTYRAG	3 cut(s)	125, 260, 1301
Sse9I	AATT	4 cut(s)	103, 652, 853, 1581
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	3 cut(s)	399, 824, 1365
SstI	GAGCTC	1 cut(s)	1308
StyD4I	CCNGG	5 cut(s)	332, 453, 557, 798, 1122
StyI	CCWWGG	2 cut(s)	690, 1523
TaaI	ACNGT	5 cut(s)	229, 286, 319, 1472, 1498
TaiI	ACGT	3 cut(s)	26, 135, 506
TaqI	TCGA	4 cut(s)	66, 231, 890, 1242
TasI	AATT	4 cut(s)	103, 652, 853, 1581
TatI	WGTACW	3 cut(s)	94, 171, 348
TauI	GCSGC	4 cut(s)	200, 203, 954, 957
TfiI	GAWTC	6 cut(s)	472, 640, 700, 1053, 1519, 1537
Tru1I	TTAA	4 cut(s)	357, 1344, 1578, 1591
Tru9I	TTAA	4 cut(s)	357, 1344, 1578, 1591
TscAI	CASTG	5 cut(s)	525, 763, 1281, 1315, 1477
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	4 cut(s)	601, 657, 790, 917
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	5 cut(s)	400, 1214, 1362, 1398, 1529
TspGWI	ACGGA	3 cut(s)	106, 268, 531
TspRI	CASTG	5 cut(s)	525, 763, 1281, 1315, 1477
Tth111I	GACNNNGTC	1 cut(s)	25
VneI	GTGCAC	2 cut(s)	394, 803
VpaK11BI	GGWCC	2 cut(s)	253, 420
XapI	RAATTY	2 cut(s)	103, 1581
XceI	RCATGY	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	3 cut(s)	399, 824, 1365
ZraI	GACGTC	1 cut(s)	24
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.