Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006278

Physical Location & Seq

Genomic Coordinates Forward (+)

17987591 .. 17989338

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGACCATCTCATATCTACATTCACTTTCTTGCAACAAAAGTTGCTTGCTTACATCTCAATTTTCAAAACCCTTGTTTATAAACCAAACTCAGAAGAAACTCAGATTCTCGATTTCCTTTTGCCTCAAGCAAAACGAATCTGGTATTGAACAAGTCGAAGAAGAAGAAGAAGAAGAATTTACCGTTGTGACGGCCGTAAAAAGCAGATACAATGAGATTGTTATAGTGGATACTTTTGCTTCTAGATATCTTCTTCTTGATTCCACTAGGAATGTGCATAGTGTTATCAATAAAGGAGGCCAGAATTGGACTGGAGCTTATTGGGTAAATGTTGTTATTGTGTTTAATTTTGAATCCTATCAACATTTTTGTTTGAAGGACGAGTCTGCGTGTTTGCCGCCTATTATCCCTAATGGTCCCATTGCAATCTACGGCTTGGGTGGTGGAACAGCTGCAAGATTGATTCTTGAGTTGTGGCCTTCAACGGAGCTTGAAGGTTGGGAAATCGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGGCTGTCTGAGCTAGAGATACCGACATCAAAAGGCGGTAGACTTTGTATTCATGTAGATGATGCTCTCTCTCCTTGTCAAGATGATTCAAAAAGATATGCTGGGATCATCGTTGATTTGTTCGCGGATGGAAAAGTGCTTGATCAGCTGCAAGAGATTCCAATGTGGCTAGAACTGGCTAGTAGGTTAATGCCTAACGGTCGCCTTATGGTGAATTGTGCGGGAATCGAAACAGAAGTAAAGAATGGAAAACCAGAGTTGGTGTTAGATGATTTGGCTTGGATGTTGAATTCTACTGTCAAGATCTTATCAGAAGCATTTCCTGGACAAGTTAGTTGGAAGAGAACACCAGATTCAGAAGGTCTCAACTTTGTGGCATTAACAGGAGGCTTACCTGATCTTAGTGACTGGTCTAGTAAGGTTCCAGTCCGTTTAAGCGAATCAGTGAAGCTATGGAAGCTTTGCGAGACGGTCCCTTTGCAACTCGGTGCTTTGAATGCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

38.91

Weight (kDa)

4.82

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44590 AT5G44590 AT5G44600
fragaria_vesca	FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540
malus_domestica	MD00G1085200.v1.1 MD10G1220900.v1.1
prunus_persica	Prupe.4G123600_v2.0.a1 Prupe.4G123600_v2.0.a1
pyrus_communis	pycom05g21780 pycom10g18660
rosa_chinensis	RchiOBHm_Chr5g0022501
rosa_laevigata	RLG00000032666
rosa_multiflora	Rmu_sc0011329.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056540
rosa_rugosa	Rorug05G0074300 Rorug05G0074300
rosa_samantha	Rh5AG161100 Rh5BG160100 Rh5CG174400 Rh5DG160700
rosa_wichuraiana	Rw5G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	583
AccII	CGCG	1 cut(s)	668
AciI	CCGC	4 cut(s)	398, 579, 668, 764
AclWI	GGATC	1 cut(s)	656
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	3 cut(s)	176, 513, 832
AgsI	TTSAA	9 cut(s)	66, 149, 353, 376, 483, 494, 633, 832, 1039
AjnI	CCWGG	1 cut(s)	865
AluBI	AGCT	7 cut(s)	317, 452, 490, 556, 691, 994, 1003
AluI	AGCT	7 cut(s)	317, 452, 490, 556, 691, 994, 1003
Alw26I	GTCTC	3 cut(s)	528, 911, 1004
AlwI	GGATC	1 cut(s)	656
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	3 cut(s)	192, 298, 476
ApeKI	GCWGC	2 cut(s)	452, 691
ApoI	RAATTY	3 cut(s)	176, 513, 832
ArsI	GACNNNNNNTTYG	2 cut(s)	1003, 1035
Asp700I	GAANNNNTTC	1 cut(s)	861
AspS9I	GGNCC	2 cut(s)	416, 1015
AsuHPI	GGTGA	1 cut(s)	766
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	2 cut(s)	416, 1015
BbvI	GCAGC	2 cut(s)	439, 678
BccI	CCATC	2 cut(s)	14, 665
BceAI	ACGGC	3 cut(s)	179, 207, 448
BciT130I	CCWGG	1 cut(s)	867
BciVI	GTATCC	1 cut(s)	223
BclI	TGATCA	1 cut(s)	685
BcoDI	GTCTC	3 cut(s)	528, 911, 1004
BfaI	CTAG	6 cut(s)	243, 267, 557, 713, 723, 957
BfuI	GTATCC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	846
BisI	GCNGC	3 cut(s)	398, 453, 692
BlsI	GCNGC	3 cut(s)	399, 454, 693
Bme1390I	CCNGG	1 cut(s)	867
Bme18I	GGWCC	2 cut(s)	416, 1015
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	416, 1015
BmiI	GGNNCC	3 cut(s)	418, 966, 1017
BmrFI	CCNGG	1 cut(s)	867
BmsI	GCATC	1 cut(s)	595
BplI	GAGNNNNNCTC	2 cut(s)	525, 557
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	2 cut(s)	110, 488
Bsa29I	ATCGAT	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	911
Bse1I	ACTGG	4 cut(s)	316, 723, 956, 968
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	867
BseCI	ATCGAT	1 cut(s)	507
BseGI	GGATG	2 cut(s)	676, 831
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	3 cut(s)	104, 115, 543
BseNI	ACTGG	4 cut(s)	316, 723, 956, 968
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	439, 678
BseYI	CCCAGC	1 cut(s)	644
Bsh1236I	CGCG	1 cut(s)	668
Bsh1285I	CGRYCG	2 cut(s)	195, 745
BshFI	GGCC	3 cut(s)	194, 300, 478
BshVI	ATCGAT	1 cut(s)	507
BsiEI	CGRYCG	2 cut(s)	195, 745
BsiHKCI	CYCGRG	1 cut(s)	542
BslFI	GGGAC	2 cut(s)	402, 1001
BsmAI	GTCTC	3 cut(s)	528, 911, 1004
BsmBI	CGTCTC	1 cut(s)	1004
BsmFI	GGGAC	2 cut(s)	402, 1001
BsmI	GAATGC	1 cut(s)	1045
BsnI	GGCC	3 cut(s)	194, 300, 478
Bso31I	GGTCTC	1 cut(s)	911
BsoBI	CYCGRG	1 cut(s)	542
Bsp143I	GATC	4 cut(s)	648, 685, 846, 940
BspACI	CCGC	4 cut(s)	398, 579, 668, 764
BspANI	GGCC	3 cut(s)	194, 300, 478
BspCNI	CTCAG	3 cut(s)	103, 114, 544
BspDI	ATCGAT	1 cut(s)	507
BspFNI	CGCG	1 cut(s)	668
BspLI	GGNNCC	3 cut(s)	418, 966, 1017
BspPI	GGATC	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	911
BsrDI	GCAATG	1 cut(s)	420
BsrI	ACTGG	4 cut(s)	316, 723, 956, 968
BssMI	GATC	4 cut(s)	648, 685, 846, 940
Bst2UI	CCWGG	1 cut(s)	867
Bst4CI	ACNGT	4 cut(s)	184, 743, 841, 1015
Bst6I	CTCTTC	1 cut(s)	878
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	4 cut(s)	90, 101, 552, 944
BstF5I	GGATG	2 cut(s)	676, 831
BstFNI	CGCG	1 cut(s)	668
BstKTI	GATC	4 cut(s)	651, 688, 849, 943
BstMAI	GTCTC	3 cut(s)	528, 911, 1004
BstMBI	GATC	4 cut(s)	648, 685, 846, 940
BstMCI	CGRYCG	2 cut(s)	195, 745
BstMWI	GCNNNNNNNGC	4 cut(s)	553, 688, 1000, 1040
BstNI	CCWGG	1 cut(s)	867
BstSCI	CCNGG	1 cut(s)	865
BstUI	CGCG	1 cut(s)	668
BstV1I	GCAGC	2 cut(s)	439, 678
BstX2I	RGATCY	1 cut(s)	846
BstYI	RGATCY	1 cut(s)	846
BstZI	CGGCCG	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	194, 300, 478
BsuTUI	ATCGAT	1 cut(s)	507
BtsCI	GGATG	2 cut(s)	676, 831
BtsIMutI	CAGTG	1 cut(s)	993
Cac8I	GCNNGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	416, 1015
ClaI	ATCGAT	1 cut(s)	507
CviAII	CATG	1 cut(s)	596
DdeI	CTNAG	4 cut(s)	90, 101, 552, 944
DpnI	GATC	4 cut(s)	650, 687, 848, 942
DpnII	GATC	4 cut(s)	648, 685, 846, 940
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	878
EarI	CTCTTC	1 cut(s)	878
EclXI	CGGCCG	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	911
Eco32I	GATATC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	416, 1015
Eco52I	CGGCCG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	832
EcoRII	CCWGG	1 cut(s)	865
EcoRV	GATATC	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	1045
Esp3I	CGTCTC	1 cut(s)	1004
FaeI	CATG	1 cut(s)	599
FaiI	YATR	8 cut(s)	13, 80, 224, 279, 597, 642, 752, 997
FaqI	GGGAC	2 cut(s)	402, 1001
FatI	CATG	1 cut(s)	595
FauI	CCCGC	1 cut(s)	757
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	3 cut(s)	398, 453, 692
FokI	GGATG	2 cut(s)	683, 838
Fsp4HI	GCNGC	3 cut(s)	398, 453, 692
FspBI	CTAG	6 cut(s)	243, 267, 557, 713, 723, 957
GluI	GCNGC	3 cut(s)	398, 453, 692
GsaI	CCCAGC	1 cut(s)	648
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	194, 300, 478
Hin1II	CATG	1 cut(s)	599
HindIII	AAGCTT	1 cut(s)	1001
HphI	GGTGA	1 cut(s)	766
Hpy166II	GTNNAC	1 cut(s)	584
Hpy188I	TCNGA	5 cut(s)	93, 104, 553, 856, 901
Hpy188III	TCNNGA	6 cut(s)	109, 243, 257, 467, 623, 844
Hpy8I	GTNNAC	1 cut(s)	584
HpyAV	CCTTC	4 cut(s)	370, 488, 489, 896
HpyCH4III	ACNGT	4 cut(s)	184, 743, 841, 1015
HpyCH4V	TGCA	7 cut(s)	33, 277, 425, 455, 694, 1024, 1043
HpyF10VI	GCNNNNNNNGC	4 cut(s)	553, 688, 1000, 1040
HpyF3I	CTNAG	4 cut(s)	90, 101, 552, 944
Hsp92II	CATG	1 cut(s)	599
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	4 cut(s)	648, 685, 846, 940
LmnI	GCTCC	2 cut(s)	314, 487
Lsp1109I	GCAGC	2 cut(s)	439, 678
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	6 cut(s)	243, 267, 557, 713, 723, 957
MaeIII	GTNAC	2 cut(s)	187, 947
MalI	GATC	4 cut(s)	650, 687, 848, 942
MboI	GATC	4 cut(s)	648, 685, 846, 940
MflI	RGATCY	1 cut(s)	846
MluCI	AATT	7 cut(s)	59, 176, 304, 346, 513, 757, 832
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	860
MnlI	CCTC	3 cut(s)	134, 290, 923
Mph1103I	ATGCAT	1 cut(s)	1045
MroXI	GAANNNNTTC	1 cut(s)	861
MseI	TTAA	5 cut(s)	345, 731, 923, 977, 1048
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	2 cut(s)	452, 691
MspR9I	CCNGG	1 cut(s)	867
Mva1269I	GAATGC	1 cut(s)	1045
MvaI	CCWGG	1 cut(s)	867
MvnI	CGCG	1 cut(s)	668
MwoI	GCNNNNNNNGC	4 cut(s)	553, 688, 1000, 1040
NdeII	GATC	4 cut(s)	648, 685, 846, 940
NlaIII	CATG	1 cut(s)	599
NlaIV	GGNNCC	3 cut(s)	418, 966, 1017
NmuCI	GTSAC	2 cut(s)	187, 947
NsiI	ATGCAT	1 cut(s)	1045
PctI	GAATGC	1 cut(s)	1045
PdmI	GAANNNNTTC	1 cut(s)	861
PfoI	TCCNGGA	1 cut(s)	865
PkrI	GCNGC	3 cut(s)	399, 454, 693
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PsiI	TTATAA	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	865
PspFI	CCCAGC	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	865
PspN4I	GGNNCC	3 cut(s)	418, 966, 1017
PspPI	GGNCC	2 cut(s)	416, 1015
PsuI	RGATCY	1 cut(s)	846
PvuII	CAGCTG	2 cut(s)	452, 691
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	5 cut(s)	345, 731, 923, 977, 1048
SatI	GCNGC	3 cut(s)	398, 453, 692
Sau3AI	GATC	4 cut(s)	648, 685, 846, 940
Sau96I	GGNCC	2 cut(s)	416, 1015
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	867
SfaNI	GCATC	1 cut(s)	595
SinI	GGWCC	2 cut(s)	416, 1015
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	2 cut(s)	125, 467
SmoI	CTYRAG	2 cut(s)	125, 467
Sse9I	AATT	7 cut(s)	59, 176, 304, 346, 513, 757, 832
SsiI	CCGC	4 cut(s)	398, 579, 668, 764
SspMI	CTAG	6 cut(s)	243, 267, 557, 713, 723, 957
StyD4I	CCNGG	1 cut(s)	865
TaaI	ACNGT	4 cut(s)	184, 743, 841, 1015
TaqI	TCGA	4 cut(s)	110, 156, 507, 771
TasI	AATT	7 cut(s)	59, 176, 304, 346, 513, 757, 832
TauI	GCSGC	1 cut(s)	400
Tru1I	TTAA	5 cut(s)	345, 731, 923, 977, 1048
Tru9I	TTAA	5 cut(s)	345, 731, 923, 977, 1048
TscAI	CASTG	1 cut(s)	993
TseFI	GTSAC	2 cut(s)	187, 947
TseI	GCWGC	2 cut(s)	452, 691
Tsp45I	GTSAC	2 cut(s)	187, 947
TspDTI	ATGAA	2 cut(s)	525, 584
TspGWI	ACGGA	2 cut(s)	500, 962
TspRI	CASTG	1 cut(s)	993
VpaK11BI	GGWCC	2 cut(s)	416, 1015
XapI	RAATTY	3 cut(s)	176, 513, 832
XbaI	TCTAGA	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	583
XmnI	GAANNNNTTC	1 cut(s)	861
XspI	CTAG	6 cut(s)	243, 267, 557, 713, 723, 957
Zsp2I	ATGCAT	1 cut(s)	1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.