Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006278

Physical Location & Seq

Genomic Coordinates Forward (+)

8108447 .. 8113458

Gene Structure 5012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13540.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAACAAGAACGAAGAAGAAGAATATCAAGTGCTAACAGCTATAAGAAGCAGTTACAATGATATTGTAATTGTGGACACTGCTCAATCAAGAATGTTGCTTCTCGACTCTACTCATAATGTGCATAGCATTCTATACAAGCACCAGAAATGGACTAATTCGTATTGGGATGAGTTTGCTAGCTTGCCTGCTATTGTCCCAGAAGGTCCTATTGCCATTTTGGGCTTGGGTGGAGGAACAGCTGCGCATTTGATGCTCGACTTGTGGCCCTTTTTGCAGCTTGAAGGTTGGGAGATTGATGAAATTTTAATTCACAAAGCAAGAGAATATTTTGGGCTGTCGGATCTGGAGAAGCCTACACAAGCTGGTGGCGTACTAAACATCCATATTGGTGATGCATTTTCTCCTGAAGTTCGTATGTGTGGAGGATATGCTGGCATTGTTATTGATTTGTTTTCTGATGGAAAAGTTTTGCCACAGTTGGAGGAGGTTACTACTTGGTTGGATTTGGAGACCTTGCTGATGCCTGAAGGTCGTCTTATGGTGAATTGTGGTGGTATTGATTGTGCATCTGATGTAAACAATGGAACAGTTAATCCAAACAATACATCCACGGATGGTAGTTGGGTAAACAATCCAGCTATCAAGGCATTATCTGAAGCTTTCCCTGGACAAGTCAGCTGGAAGAAAATGCCTGCAAATTTCGGTGCAAATTATCTTGCACTGACGGGACCTTTACCAGAATTCACTTCGTGGTCTGCTGCAGTACCAGGTCCCTTGACTGCCAGTGTGAAGCAATGGAGACCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

29.6

Weight (kDa)

4.62

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44590 AT5G44590 AT5G44600
fragaria_vesca	FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540
malus_domestica	MD00G1085200.v1.1 MD10G1220900.v1.1
prunus_persica	Prupe.4G123600_v2.0.a1 Prupe.4G123600_v2.0.a1
pyrus_communis	pycom05g21780 pycom10g18660
rosa_chinensis	RchiOBHm_Chr5g0022501
rosa_laevigata	RLG00000032666
rosa_multiflora	Rmu_sc0011329.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056540
rosa_rugosa	Rorug05G0074300 Rorug05G0074300
rosa_samantha	Rh5AG161100 Rh5BG160100 Rh5CG174400 Rh5DG160700
rosa_wichuraiana	Rw5G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	246
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	3 cut(s)	303, 700, 743
AcuI	CTGAAG	3 cut(s)	429, 549, 678
AdeI	CACNNNGTG	1 cut(s)	753
AfaI	GTAC	2 cut(s)	375, 768
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	2 cut(s)	667, 769
AloI	GAACNNNNNNTCC	2 cut(s)	580, 612
AluBI	AGCT	8 cut(s)	41, 183, 242, 280, 365, 641, 662, 681
AluI	AGCT	8 cut(s)	41, 183, 242, 280, 365, 641, 662, 681
Alw26I	GTCTC	2 cut(s)	506, 796
AlwI	GGATC	1 cut(s)	351
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	3 cut(s)	242, 277, 761
ApoI	RAATTY	3 cut(s)	303, 700, 743
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	4 cut(s)	206, 267, 731, 773
AsuHPI	GGTGA	2 cut(s)	404, 556
AsuNHI	GCTAGC	1 cut(s)	179
AvaII	GGWCC	3 cut(s)	206, 731, 773
BbvI	GCAGC	3 cut(s)	229, 289, 748
BccI	CCATC	2 cut(s)	455, 611
BciT130I	CCWGG	2 cut(s)	669, 771
BcoDI	GTCTC	2 cut(s)	506, 796
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	762
BisI	GCNGC	3 cut(s)	243, 278, 762
BlsI	GCNGC	3 cut(s)	244, 279, 763
Bme1390I	CCNGG	2 cut(s)	669, 771
Bme18I	GGWCC	3 cut(s)	206, 731, 773
BmgT120I	GGNCC	4 cut(s)	206, 267, 731, 773
BmiI	GGNNCC	2 cut(s)	732, 775
BmrFI	CCNGG	2 cut(s)	669, 771
BmsI	GCATC	4 cut(s)	243, 385, 513, 578
BmtI	GCTAGC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	368
BsaI	GGTCTC	2 cut(s)	506, 796
BsaJI	CCNNGG	2 cut(s)	612, 667
Bse1I	ACTGG	1 cut(s)	786
Bse3DI	GCAATG	1 cut(s)	803
BseBI	CCWGG	2 cut(s)	669, 771
BseDI	CCNNGG	2 cut(s)	612, 667
BseGI	GGATG	4 cut(s)	175, 381, 608, 622
BseMI	GCAATG	1 cut(s)	803
BseNI	ACTGG	1 cut(s)	786
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	3 cut(s)	229, 289, 748
BshFI	GGCC	1 cut(s)	268
BslFI	GGGAC	3 cut(s)	182, 744, 759
BsmAI	GTCTC	2 cut(s)	506, 796
BsmFI	GGGAC	3 cut(s)	182, 744, 759
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	268
Bso31I	GGTCTC	2 cut(s)	506, 796
Bsp143I	GATC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	732, 775
BspMAI	CTGCAG	1 cut(s)	766
BspOI	GCTAGC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	351
BspTNI	GGTCTC	2 cut(s)	506, 796
BsrDI	GCAATG	1 cut(s)	803
BsrI	ACTGG	1 cut(s)	786
BssECI	CCNNGG	2 cut(s)	612, 667
BssMI	GATC	1 cut(s)	343
Bst2UI	CCWGG	2 cut(s)	669, 771
Bst4CI	ACNGT	2 cut(s)	480, 592
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstC8I	GCNNGC	5 cut(s)	181, 185, 189, 436, 696
BstDSI	CCRYGG	1 cut(s)	612
BstF5I	GGATG	4 cut(s)	175, 381, 608, 622
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	2 cut(s)	506, 796
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 274, 647
BstNI	CCWGG	2 cut(s)	669, 771
BstSCI	CCNGG	2 cut(s)	667, 769
BstSFI	CTRYAG	1 cut(s)	762
BstV1I	GCAGC	3 cut(s)	229, 289, 748
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	612
BtsCI	GGATG	4 cut(s)	175, 381, 608, 622
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	3 cut(s)	78, 722, 793
Cac8I	GCNNGC	5 cut(s)	181, 185, 189, 436, 696
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	4 cut(s)	206, 267, 731, 773
CsiI	ACCWGGT	1 cut(s)	769
Csp6I	GTAC	2 cut(s)	374, 767
CviAII	CATG	1 cut(s)	807
CviQI	GTAC	2 cut(s)	374, 767
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
DraIII	CACNNNGTG	1 cut(s)	753
Eco31I	GGTCTC	2 cut(s)	506, 796
Eco47I	GGWCC	3 cut(s)	206, 731, 773
Eco57I	CTGAAG	3 cut(s)	429, 549, 678
EcoO109I	RGGNCCY	3 cut(s)	206, 731, 773
EcoRI	GAATTC	1 cut(s)	743
EcoRII	CCWGG	2 cut(s)	667, 769
EcoT22I	ATGCAT	1 cut(s)	400
FaeI	CATG	1 cut(s)	810
FaiI	YATR	9 cut(s)	44, 117, 126, 136, 387, 419, 432, 542, 808
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FaqI	GGGAC	3 cut(s)	182, 744, 759
FatI	CATG	1 cut(s)	806
Fnu4HI	GCNGC	3 cut(s)	243, 278, 762
FokI	GGATG	4 cut(s)	182, 368, 595, 629
Fsp4HI	GCNGC	3 cut(s)	243, 278, 762
FspBI	CTAG	1 cut(s)	180
FspI	TGCGCA	1 cut(s)	246
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	3 cut(s)	243, 278, 762
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	810
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	1 cut(s)	107
HphI	GGTGA	2 cut(s)	404, 556
Hpy166II	GTNNAC	3 cut(s)	76, 580, 631
Hpy188I	TCNGA	4 cut(s)	343, 460, 574, 658
Hpy188III	TCNNGA	4 cut(s)	90, 104, 347, 407
Hpy8I	GTNNAC	3 cut(s)	76, 580, 631
HpyAV	CCTTC	3 cut(s)	197, 278, 524
HpyCH4III	ACNGT	2 cut(s)	480, 592
HpyCH4V	TGCA	8 cut(s)	124, 277, 398, 569, 698, 710, 722, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 274, 647
Hsp92II	CATG	1 cut(s)	810
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	343
Lsp1109I	GCAGC	3 cut(s)	229, 289, 748
LweI	GCATC	4 cut(s)	243, 385, 513, 578
MabI	ACCWGGT	1 cut(s)	769
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	53, 490
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	4 cut(s)	26, 29, 32, 697
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	8 cut(s)	69, 157, 303, 309, 547, 700, 712, 743
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	3 cut(s)	321, 462, 483
MnlI	CCTC	4 cut(s)	227, 419, 478, 481
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	2 cut(s)	308, 594
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	242, 681
MspR9I	CCNGG	2 cut(s)	669, 771
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	2 cut(s)	669, 771
MwoI	GCNNNNNNNGC	3 cut(s)	253, 274, 647
NdeII	GATC	1 cut(s)	343
NheI	GCTAGC	1 cut(s)	179
NlaIII	CATG	1 cut(s)	810
NlaIV	GGNNCC	2 cut(s)	732, 775
NsbI	TGCGCA	1 cut(s)	246
NsiI	ATGCAT	1 cut(s)	400
PctI	GAATGC	1 cut(s)	129
PkrI	GCNGC	3 cut(s)	244, 279, 763
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PpuMI	RGGWCCY	3 cut(s)	206, 731, 773
Psp5II	RGGWCCY	3 cut(s)	206, 731, 773
Psp6I	CCWGG	2 cut(s)	667, 769
PspGI	CCWGG	2 cut(s)	667, 769
PspN4I	GGNNCC	2 cut(s)	732, 775
PspPI	GGNCC	4 cut(s)	206, 267, 731, 773
PspPPI	RGGWCCY	3 cut(s)	206, 731, 773
PstI	CTGCAG	1 cut(s)	766
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	2 cut(s)	242, 681
RsaI	GTAC	2 cut(s)	375, 768
RsaNI	GTAC	2 cut(s)	374, 767
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	308, 594
SatI	GCNGC	3 cut(s)	243, 278, 762
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	4 cut(s)	206, 267, 731, 773
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	669, 771
SexAI	ACCWGGT	1 cut(s)	769
SfaNI	GCATC	4 cut(s)	243, 385, 513, 578
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	3 cut(s)	206, 731, 773
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	8 cut(s)	69, 157, 303, 309, 547, 700, 712, 743
SspI	AATATT	1 cut(s)	329
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	667, 769
TaaI	ACNGT	2 cut(s)	480, 592
TaqI	TCGA	2 cut(s)	105, 258
TasI	AATT	8 cut(s)	69, 157, 303, 309, 547, 700, 712, 743
Tru1I	TTAA	2 cut(s)	308, 594
Tru9I	TTAA	2 cut(s)	308, 594
TscAI	CASTG	3 cut(s)	85, 729, 793
TseI	GCWGC	3 cut(s)	242, 277, 761
TspDTI	ATGAA	2 cut(s)	17, 315
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	3 cut(s)	85, 729, 793
VpaK11BI	GGWCC	3 cut(s)	206, 731, 773
XapI	RAATTY	3 cut(s)	303, 700, 743
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XspI	CTAG	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.