Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006278

Physical Location & Seq

Genomic Coordinates Reverse (-)

31906825 .. 31909191

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1220900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCTGCTCCTCGATTCTTCTCATAATGTGCATAGCATTGTTTACAAGGACCAGAAGTGGACTGCCTCCTACTGGATATGTGATGAGTTTGCTAGCTTGCCTGCTATTGTTCCGAAAGGTCCTATTGCCATCCTTGGCTTGGATGGTGGAACAGCTGCTCATTTGATGCTCATCTTGGGGCCATCATTGCAGCTTGAAGGTTGGGAAATTGATCAAATTTTCATTGATAAAGCAAGAGAATATCTTGGGCTGTCTGATCTTGAGAAGCAAACTCAAGCTGGTGGCATACTTAACGTTCATATTGGCAATGCCCTTTCTCCTTCAGTTAATATTCCTGGAGGATATGCTGGTGAGATTCTTGTCTACATGGCTCGTTGTATTACCCGGAGCACATTCTTCTGTTTCTTTGGATGTTGTGCACAGATTCAAGGGTTTGTTTGTAATTTTTGTACTCGTGCATACTTCCCAAGTACATACATTGTTTATGCCTCATTTTTTGCAATTCCCTACAGTTCCGTCCCTAGTGTATTGCTAACTTGTTCTTGCAATTCCCTACACTTTTTACGCATAGCTATCTGGATTCTGGAAACACATAGAGAATGCTATCCACTTGAACAACCTTATTCTGAGTTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.64

Weight (kDa)

5.55

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44590 AT5G44590 AT5G44600
fragaria_vesca	FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540
malus_domestica	MD00G1085200.v1.1 MD10G1220900.v1.1
prunus_persica	Prupe.4G123600_v2.0.a1 Prupe.4G123600_v2.0.a1
pyrus_communis	pycom05g21780 pycom10g18660
rosa_chinensis	RchiOBHm_Chr5g0022501
rosa_laevigata	RLG00000032666
rosa_multiflora	Rmu_sc0011329.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056540
rosa_rugosa	Rorug05G0074300 Rorug05G0074300
rosa_samantha	Rh5AG161100 Rh5BG160100 Rh5CG174400 Rh5DG160700
rosa_wichuraiana	Rw5G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	363
AclI	AACGTT	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	451, 472
AfiI	CCNNNNNNNGG	2 cut(s)	72, 139
AgsI	TTSAA	3 cut(s)	197, 428, 614
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	5 cut(s)	96, 155, 193, 278, 572
AluI	AGCT	5 cut(s)	96, 155, 193, 278, 572
Alw21I	GWGCWC	2 cut(s)	392, 421
Alw44I	GTGCAC	1 cut(s)	417
AoxI	GGCC	1 cut(s)	179
ApaLI	GTGCAC	1 cut(s)	417
ApeKI	GCWGC	3 cut(s)	4, 155, 190
ApoI	RAATTY	1 cut(s)	216
AspS9I	GGNCC	3 cut(s)	49, 119, 179
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	362
AsuNHI	GCTAGC	1 cut(s)	92
AvaII	GGWCC	2 cut(s)	49, 119
BaeGI	GKGCMC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	453
Bbv12I	GWGCWC	2 cut(s)	392, 421
BbvI	GCAGC	2 cut(s)	142, 202
BccI	CCATC	3 cut(s)	137, 137, 190
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	385
BfaI	CTAG	2 cut(s)	93, 522
BfmI	CTRYAG	1 cut(s)	508
BisI	GCNGC	3 cut(s)	5, 156, 191
BlsI	GCNGC	3 cut(s)	6, 157, 192
Bme1390I	CCNGG	2 cut(s)	336, 385
Bme18I	GGWCC	2 cut(s)	49, 119
BmgT120I	GGNCC	3 cut(s)	49, 119, 179
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	336, 385
BmsI	GCATC	1 cut(s)	156
BmtI	GCTAGC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	357
BpuEI	CTTGAG	2 cut(s)	258, 281
BpuMI	CCSGG	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 139
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	2 cut(s)	185, 313
Bse8I	GATNNNNATC	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	3 cut(s)	129, 148, 416
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	2 cut(s)	72, 139
BseMI	GCAATG	2 cut(s)	185, 313
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	2 cut(s)	142, 202
BshFI	GGCC	1 cut(s)	181
BsiHKAI	GWGCWC	2 cut(s)	392, 421
BsiSI	CCGG	1 cut(s)	385
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	2 cut(s)	72, 139
BsmFI	GGGAC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	392, 421
Bsp143I	GATC	2 cut(s)	211, 256
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	180
BspOI	GCTAGC	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	185, 313
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	211, 256
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	133
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	512
BstC8I	GCNNGC	3 cut(s)	94, 98, 102
BstDEI	CTNAG	1 cut(s)	627
BstF5I	GGATG	3 cut(s)	129, 148, 416
BstKTI	GATC	2 cut(s)	214, 259
BstMBI	GATC	2 cut(s)	211, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	2 cut(s)	334, 383
BstSFI	CTRYAG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	2 cut(s)	142, 202
BsuRI	GGCC	1 cut(s)	181
BtsCI	GGATG	3 cut(s)	129, 148, 416
Cac8I	GCNNGC	3 cut(s)	94, 98, 102
Cfr13I	GGNCC	3 cut(s)	49, 119, 179
Csp6I	GTAC	2 cut(s)	450, 471
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	9 cut(s)	96, 138, 155, 181, 193, 250, 278, 371, 572
CviKI_1	RGCY	9 cut(s)	96, 138, 155, 181, 193, 250, 278, 371, 572
CviQI	GTAC	2 cut(s)	450, 471
DdeI	CTNAG	1 cut(s)	627
DpnI	GATC	2 cut(s)	213, 258
DpnII	GATC	2 cut(s)	211, 256
Eco130I	CCWWGG	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	49, 119
Eco57I	CTGAAG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	370
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	1 cut(s)	366
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	3 cut(s)	5, 156, 191
FokI	GGATG	3 cut(s)	116, 155, 423
Fsp4HI	GCNGC	3 cut(s)	5, 156, 191
FspBI	CTAG	2 cut(s)	93, 522
GluI	GCNGC	3 cut(s)	5, 156, 191
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	1 cut(s)	385
Hin1II	CATG	1 cut(s)	370
HinfI	GANTC	4 cut(s)	14, 355, 424, 580
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	4 cut(s)	43, 60, 364, 419
Hpy188I	TCNGA	3 cut(s)	114, 256, 628
Hpy188III	TCNNGA	3 cut(s)	260, 577, 584
Hpy8I	GTNNAC	4 cut(s)	43, 60, 364, 419
HpyAV	CCTTC	2 cut(s)	191, 330
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	6 cut(s)	31, 190, 419, 458, 500, 546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	627
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	211, 256
LmnI	GCTCC	2 cut(s)	12, 387
Lsp1109I	GCAGC	2 cut(s)	142, 202
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	2 cut(s)	93, 522
MaeII	ACGT	1 cut(s)	294
MalI	GATC	2 cut(s)	213, 258
MboI	GATC	2 cut(s)	211, 256
MboII	GAAGA	2 cut(s)	9, 388
MhlI	GDGCHC	2 cut(s)	392, 421
MluCI	AATT	5 cut(s)	207, 216, 442, 501, 547
MnlI	CCTC	4 cut(s)	20, 76, 332, 499
MseI	TTAA	2 cut(s)	291, 327
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	2 cut(s)	336, 385
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	2 cut(s)	211, 256
NheI	GCTAGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	605
PfeI	GAWTC	4 cut(s)	14, 355, 424, 580
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	6, 157, 192
PpuMI	RGGWCCY	1 cut(s)	119
Psp1406I	AACGTT	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	3 cut(s)	49, 119, 179
PspPPI	RGGWCCY	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	451, 472
RsaNI	GTAC	2 cut(s)	450, 471
SaqAI	TTAA	2 cut(s)	291, 327
SatI	GCNGC	3 cut(s)	5, 156, 191
Sau3AI	GATC	2 cut(s)	211, 256
Sau96I	GGNCC	3 cut(s)	49, 119, 179
ScrFI	CCNGG	2 cut(s)	336, 385
SduI	GDGCHC	2 cut(s)	392, 421
SetI	ASST	9 cut(s)	98, 121, 157, 195, 202, 280, 297, 574, 622
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	508
SinI	GGWCC	2 cut(s)	49, 119
SmlI	CTYRAG	2 cut(s)	260, 273
SmoI	CTYRAG	2 cut(s)	260, 273
Sse9I	AATT	5 cut(s)	207, 216, 442, 501, 547
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	2 cut(s)	93, 522
StyD4I	CCNGG	2 cut(s)	334, 383
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	512
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	12
TasI	AATT	5 cut(s)	207, 216, 442, 501, 547
TatI	WGTACW	2 cut(s)	449, 470
TfiI	GAWTC	4 cut(s)	14, 355, 424, 580
Tru1I	TTAA	2 cut(s)	291, 327
Tru9I	TTAA	2 cut(s)	291, 327
TseI	GCWGC	3 cut(s)	4, 155, 190
TspDTI	ATGAA	3 cut(s)	211, 287, 623
TspGWI	ACGGA	1 cut(s)	505
VneI	GTGCAC	1 cut(s)	417
VpaK11BI	GGWCC	2 cut(s)	49, 119
XapI	RAATTY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	93, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.