Prupe.4G123600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0006278
Physical Location & Seq
Forward (+)
6740303 .. 6746259
5957 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G123600.1

Sequence Viewer

Length: 1047 bp
ATGGCTCTGCTAACAAATAGCCTGCTATTGTTACCCCAGCAACTCGGTCCGAGTCGAACTCAGTCGCCTGCTACCATTCATTTCAACCATTCACAGCGCTGTCACCGTTTCTGCAGAGCAACATCCTCTGTTTCGCTTTGGTTCTGTAATGGGAAACGAAAAGTCAAGAGTCTCAAGACCAAAGCCTCCAAGGCAGATAAGCAAGAAGTGAAATTGGAAGAGAAAAAGGGGGAAGAAGAAGAAGAATTTCAAGTACTGACGGCCATGAAGAGCAGTTACAATGACATAGTAATCGTGGACACTCCCAAATCAAGAATGCTGCTCCTCGACTCTTCTCAAAATGTGCACAGCATTGTTTACAAGCACCAGAAATGGACTGCTTCCTACTGGGATGAGTTTGCTAGCTTGCCTGCTATTGTTCCAGAAGGTCCTATTGCCATCCTTGGCTTGGGTGGTGGAACAGCTGCTCATCTGATGCTTGACTTGTGGCCGTCTTTGCAGCTTGAAGGTTGGGAGATTGATCAAATTTTGATTGATAAAGCAAGAGAGTATTTTGGGCTGTCTGATCTTGAGAAGCCTACTCAAGCTGGTGGCATACTTAACGTTCACATTGGTGATGCCCTTTCTCCTTCAGTTAATATTTCTGGAGGGTATGCCGGCATTGTTATTGACTTGTTTTCTGATGGAAAAGTTTTGCCACAGTTGCAAGAGGTTACAACTTGGTTGGAATTAAAGGATCAGCTGATGCCCAATGGCCGTCTAATGGTGAACTGTGGTGGCGTAGATGGAGCATCTGATGTCAGAGATGGAACAGCGCATCCAAAAAATACCTCCAGTGACGACAGTTGGCTACAAAATTCTACTATCAAGGCATTATCTAAAGCATTCCCTGGACAAGTAAGCTGGAAGAAAATGCCACAAACTTTTGGTGAAAATTATCTTGCACTGACGGGACCTTTGCCAGAATTGACTTCATGGTCTGCTGCAGTAACAGGTCCCTTGACCGCCAGTGTGAATCTATGGAGACCATGCGAACCTTGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

38.19

Weight (kDa)

6.08

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 976
AciI CCGC 1 cut(s) 1005
AclI AACGTT 1 cut(s) 603
AclWI GGATC 1 cut(s) 744
AcoI YGGCCR 3 cut(s) 261, 488, 754
AcsI RAATTY 3 cut(s) 245, 525, 856
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 1 cut(s) 255
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 448, 763
AgsI TTSAA 3 cut(s) 85, 251, 506
AjnI CCWGG 1 cut(s) 889
AleI CACNNNNGTG 1 cut(s) 612
AloI GAACNNNNNNTCC 2 cut(s) 802, 834
AluBI AGCT 6 cut(s) 405, 464, 502, 587, 742, 903
AluI AGCT 6 cut(s) 405, 464, 502, 587, 742, 903
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 176, 1018
Alw44I GTGCAC 1 cut(s) 344
AlwI GGATC 1 cut(s) 744
Aor51HI AGCGCT 1 cut(s) 98
AoxI GGCC 3 cut(s) 261, 488, 754
ApaLI GTGCAC 1 cut(s) 344
ApeKI GCWGC 4 cut(s) 319, 464, 499, 983
ApoI RAATTY 3 cut(s) 245, 525, 856
ArsI GACNNNNNNTTYG 2 cut(s) 940, 972
Asp700I GAANNNNTTC 1 cut(s) 246
AspLEI GCGC 2 cut(s) 99, 817
AspS9I GGNCC 4 cut(s) 47, 428, 953, 995
AsuHPI GGTGA 4 cut(s) 95, 626, 778, 941
AsuNHI GCTAGC 1 cut(s) 401
AvaII GGWCC 4 cut(s) 47, 428, 953, 995
BaeGI GKGCMC 1 cut(s) 348
BarI GAAGNNNNNNTAC 2 cut(s) 260, 292
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 4 cut(s) 306, 451, 511, 970
BccI CCATC 4 cut(s) 446, 677, 779, 800
BceAI ACGGC 3 cut(s) 276, 475, 741
BciT130I CCWGG 1 cut(s) 891
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 2 cut(s) 176, 1018
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 2 cut(s) 112, 984
BfoI RGCGCY 1 cut(s) 100
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 4 cut(s) 320, 465, 500, 984
BlsI GCNGC 4 cut(s) 321, 466, 501, 985
BmcAI AGTACT 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 891
Bme18I GGWCC 4 cut(s) 47, 428, 953, 995
BmgT120I GGNCC 4 cut(s) 47, 428, 953, 995
BmiI GGNNCC 2 cut(s) 954, 997
BmrFI CCNGG 1 cut(s) 891
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 5 cut(s) 465, 607, 735, 800, 826
BmtI GCTAGC 1 cut(s) 405
BmuI ACTGGG 1 cut(s) 397
BplI GAGNNNNNCTC 2 cut(s) 43, 75
BpmI CTGGAG 2 cut(s) 666, 817
BpuEI CTTGAG 3 cut(s) 158, 567, 590
BsaI GGTCTC 1 cut(s) 1018
BsaJI CCNNGG 3 cut(s) 189, 442, 889
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 763
Bse118I RCCGGY 1 cut(s) 656
Bse1I ACTGG 3 cut(s) 392, 834, 1008
BseBI CCWGG 1 cut(s) 891
BseDI CCNNGG 3 cut(s) 189, 442, 889
BseGI GGATG 4 cut(s) 122, 397, 438, 817
BseLI CCNNNNNNNGG 2 cut(s) 448, 763
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 3 cut(s) 392, 834, 1008
BseRI GAGGAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 4 cut(s) 306, 451, 511, 970
BseYI CCCAGC 1 cut(s) 36
BshFI GGCC 3 cut(s) 263, 490, 756
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 657
BslFI GGGAC 2 cut(s) 966, 981
BslI CCNNNNNNNGG 2 cut(s) 448, 763
BsmAI GTCTC 2 cut(s) 176, 1018
BsmFI GGGAC 2 cut(s) 966, 981
BsmI GAATGC 2 cut(s) 321, 884
BsnI GGCC 3 cut(s) 263, 490, 756
Bso31I GGTCTC 1 cut(s) 1018
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 3 cut(s) 520, 565, 736
BspACI CCGC 1 cut(s) 1005
BspANI GGCC 3 cut(s) 263, 490, 756
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 954, 997
BspMAI CTGCAG 2 cut(s) 116, 988
BspOI GCTAGC 1 cut(s) 405
BspPI GGATC 1 cut(s) 744
BspQI GCTCTTC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 1018
BsrFI RCCGGY 1 cut(s) 656
BsrI ACTGG 3 cut(s) 392, 834, 1008
BssAI RCCGGY 1 cut(s) 656
BssECI CCNNGG 3 cut(s) 189, 442, 889
BssMI GATC 3 cut(s) 520, 565, 736
BssT1I CCWWGG 2 cut(s) 189, 442
Bst2UI CCWGG 1 cut(s) 891
Bst4CI ACNGT 4 cut(s) 107, 702, 773, 845
Bst6I CTCTTC 3 cut(s) 213, 263, 337
BstC8I GCNNGC 6 cut(s) 23, 69, 403, 407, 411, 658
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 4 cut(s) 122, 397, 438, 817
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 2 cut(s) 99, 817
BstKTI GATC 3 cut(s) 523, 568, 739
BstMAI GTCTC 2 cut(s) 176, 1018
BstMBI GATC 3 cut(s) 520, 565, 736
BstMWI GCNNNNNNNGC 3 cut(s) 191, 496, 703
BstNI CCWGG 1 cut(s) 891
BstSCI CCNGG 1 cut(s) 889
BstSFI CTRYAG 2 cut(s) 112, 984
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 4 cut(s) 306, 451, 511, 970
BsuRI GGCC 3 cut(s) 263, 490, 756
BtsCI GGATG 4 cut(s) 122, 397, 438, 817
BtsIMutI CAGTG 3 cut(s) 841, 944, 1015
Cac8I GCNNGC 6 cut(s) 23, 69, 403, 407, 411, 658
CfoI GCGC 2 cut(s) 99, 817
Cfr10I RCCGGY 1 cut(s) 656
Cfr13I GGNCC 4 cut(s) 47, 428, 953, 995
CpoI CGGWCCG 1 cut(s) 47
Csp6I GTAC 1 cut(s) 254
CspI CGGWCCG 1 cut(s) 47
CviAII CATG 3 cut(s) 265, 975, 1029
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 1 cut(s) 60
DpnI GATC 3 cut(s) 522, 567, 738
DpnII GATC 3 cut(s) 520, 565, 736
DrdI GACNNNNNNGTC 1 cut(s) 976
DseDI GACNNNNNNGTC 1 cut(s) 976
EaeI YGGCCR 3 cut(s) 261, 488, 754
Eam1104I CTCTTC 3 cut(s) 213, 263, 337
EarI CTCTTC 3 cut(s) 213, 263, 337
Eco130I CCWWGG 2 cut(s) 189, 442
Eco31I GGTCTC 1 cut(s) 1018
Eco47I GGWCC 4 cut(s) 47, 428, 953, 995
Eco47III AGCGCT 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 615
EcoO109I RGGNCCY 3 cut(s) 428, 953, 995
EcoRII CCWGG 1 cut(s) 889
EcoT14I CCWWGG 2 cut(s) 189, 442
ErhI CCWWGG 2 cut(s) 189, 442
FaeI CATG 3 cut(s) 268, 978, 1032
FaiI YATR 7 cut(s) 266, 287, 596, 654, 976, 1021, 1030
FaqI GGGAC 2 cut(s) 966, 981
FatI CATG 3 cut(s) 264, 974, 1028
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 320, 465, 500, 984
FokI GGATG 4 cut(s) 109, 404, 425, 804
Fsp4HI GCNGC 4 cut(s) 320, 465, 500, 984
FspBI CTAG 1 cut(s) 402
GlaI GCGC 2 cut(s) 98, 816
GluI GCNGC 4 cut(s) 320, 465, 500, 984
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 2 cut(s) 666, 817
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 3 cut(s) 263, 490, 756
HapII CCGG 1 cut(s) 657
HhaI GCGC 2 cut(s) 99, 817
Hin1II CATG 3 cut(s) 268, 978, 1032
Hin6I GCGC 2 cut(s) 97, 815
HinP1I GCGC 2 cut(s) 97, 815
HinfI GANTC 4 cut(s) 52, 169, 329, 1015
HpaII CCGG 1 cut(s) 657
HphI GGTGA 4 cut(s) 95, 626, 778, 941
Hpy166II GTNNAC 5 cut(s) 298, 346, 358, 607, 769
Hpy188I TCNGA 6 cut(s) 51, 474, 565, 682, 796, 803
Hpy188III TCNNGA 6 cut(s) 166, 175, 312, 422, 569, 645
Hpy8I GTNNAC 5 cut(s) 298, 346, 358, 607, 769
HpyAV CCTTC 3 cut(s) 419, 500, 639
HpyCH4III ACNGT 4 cut(s) 107, 702, 773, 845
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 6 cut(s) 114, 346, 499, 706, 944, 986
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 496, 703
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 3 cut(s) 268, 978, 1032
HspAI GCGC 2 cut(s) 97, 815
KroI GCCGGC 1 cut(s) 656
KroNI GCCGGC 1 cut(s) 658
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 3 cut(s) 520, 565, 736
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 2 cut(s) 327, 788
Lsp1109I GCAGC 4 cut(s) 306, 451, 511, 970
LweI GCATC 5 cut(s) 465, 607, 735, 800, 826
MaeI CTAG 1 cut(s) 402
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 6 cut(s) 30, 101, 275, 712, 836, 988
MalI GATC 3 cut(s) 522, 567, 738
MboI GATC 3 cut(s) 520, 565, 736
MboII GAAGA 8 cut(s) 230, 245, 248, 251, 254, 280, 324, 919
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 7 cut(s) 212, 245, 525, 728, 856, 934, 965
MlyI GAGTC 3 cut(s) 61, 178, 323
MmeI TCCRAC 1 cut(s) 705
MnlI CCTC 6 cut(s) 136, 196, 335, 641, 703, 841
MroNI GCCGGC 1 cut(s) 656
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 3 cut(s) 600, 636, 731
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 2 cut(s) 464, 742
MspI CCGG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 891
Mva1269I GAATGC 2 cut(s) 321, 884
MvaI CCWGG 1 cut(s) 891
MwoI GCNNNNNNNGC 3 cut(s) 191, 496, 703
NaeI GCCGGC 1 cut(s) 658
NdeII GATC 3 cut(s) 520, 565, 736
NgoMIV GCCGGC 1 cut(s) 656
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 3 cut(s) 268, 978, 1032
NlaIV GGNNCC 2 cut(s) 954, 997
NmuCI GTSAC 2 cut(s) 101, 836
OliI CACNNNNGTG 1 cut(s) 612
PciSI GCTCTTC 1 cut(s) 263
PctI GAATGC 2 cut(s) 321, 884
PdiI GCCGGC 1 cut(s) 658
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 1015
PkrI GCNGC 4 cut(s) 321, 466, 501, 985
PleI GAGTC 3 cut(s) 60, 177, 323
PpsI GAGTC 3 cut(s) 60, 177, 323
PpuMI RGGWCCY 3 cut(s) 428, 953, 995
Psp1406I AACGTT 1 cut(s) 603
Psp5II RGGWCCY 3 cut(s) 428, 953, 995
Psp6I CCWGG 1 cut(s) 889
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 1 cut(s) 889
PspN4I GGNNCC 2 cut(s) 954, 997
PspPI GGNCC 4 cut(s) 47, 428, 953, 995
PspPPI RGGWCCY 3 cut(s) 428, 953, 995
PstI CTGCAG 2 cut(s) 116, 988
PvuII CAGCTG 2 cut(s) 464, 742
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 612
Rsr2I CGGWCCG 1 cut(s) 47
RsrII CGGWCCG 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 3 cut(s) 600, 636, 731
SatI GCNGC 4 cut(s) 320, 465, 500, 984
Sau3AI GATC 3 cut(s) 520, 565, 736
Sau96I GGNCC 4 cut(s) 47, 428, 953, 995
ScaI AGTACT 1 cut(s) 255
SchI GAGTC 3 cut(s) 61, 178, 323
ScrFI CCNGG 1 cut(s) 891
SduI GDGCHC 1 cut(s) 348
SfaNI GCATC 5 cut(s) 465, 607, 735, 800, 826
SfcI CTRYAG 2 cut(s) 112, 984
SinI GGWCC 4 cut(s) 47, 428, 953, 995
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 3 cut(s) 173, 569, 582
SmoI CTYRAG 3 cut(s) 173, 569, 582
Sse9I AATT 7 cut(s) 212, 245, 525, 728, 856, 934, 965
SsiI CCGC 1 cut(s) 1005
SspI AATATT 1 cut(s) 640
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 889
StyI CCWWGG 2 cut(s) 189, 442
TaaI ACNGT 4 cut(s) 107, 702, 773, 845
TaiI ACGT 1 cut(s) 606
TaqI TCGA 2 cut(s) 55, 327
TaqII GACCGA 1 cut(s) 35
TasI AATT 7 cut(s) 212, 245, 525, 728, 856, 934, 965
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 1 cut(s) 1015
Tru1I TTAA 3 cut(s) 600, 636, 731
Tru9I TTAA 3 cut(s) 600, 636, 731
TscAI CASTG 3 cut(s) 841, 951, 1015
TseFI GTSAC 2 cut(s) 101, 836
TseI GCWGC 4 cut(s) 319, 464, 499, 983
Tsp45I GTSAC 2 cut(s) 101, 836
TspDTI ATGAA 3 cut(s) 68, 281, 963
TspRI CASTG 3 cut(s) 841, 951, 1015
VneI GTGCAC 1 cut(s) 344
VpaK11BI GGWCC 4 cut(s) 47, 428, 953, 995
XapI RAATTY 3 cut(s) 245, 525, 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 1 cut(s) 402
ZrmI AGTACT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.