Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006278

Physical Location & Seq

Genomic Coordinates Forward (+)

16640198 .. 16645533

Gene Structure 5336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG160700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCTCTCTCAACAAATAGCCTGCTTCTCCTACCCAAACTACTCACTCCAACTCAAACTCAGTCGCCGGCAACTTTTCATTTCAATCATTCCCGGCCTTATAACCATAGCTCTACGACAGAGTCCTCTGTTTCGCTTTGGTTGCATAATGAGAATCCAAAATTCAAGACCAACTCAGCCAATGCAGATAAGCAAGAAGTGGAAGTGAACAAGGAAGAAGAAGAATATCAAGTACTAACAGCTATAAGAAGCAGTTACAATGACATTGTAATCGTGGACACTGCTCAATCAAGAATGTTGCTTCTTGACTCTACTCATAATGTGCATAGTATTCGTTACAAGCACCAGAAATGGACTAATTCGTATTGGGATGAGTTTGCTAGCTTGCCTCCTATTGTCCCAGAAGGTCCTATTGCCATTTTGGGCTTGGGTGGAGGAACAGCTGCGCATTTGATGCTCGACTTGTGGCCGTCTTTGCAGCTTGAAGGTTGGGAGATTGATGAAATCTTGATTCACAAAGCAAGAGAATATTTTGGGCTGTCGGATCTTGAGAAGCATACACAAGCTGGTGGCATACTTAACATCCATATTGGTGATGCATTTTCGCCTTCAGTTCGTATTTCTGGAGGATATGCTGGCATCATTGTTGACTTGTTTTCTGATGGAAAAGTTCTGCCACAGTTGGAGGAGGTCACTACTTGGTTGGAATTGAAGAATCTGCTGATGCCCAAAGGTCGTCTTATGGTGAATTGTGGTGGCATAGATGGCACTGATGTAAATAATGGAATAGTTCACCCAAACAATACTGATGACAGTTGGGTATACAATCCGGCTATCAAGGCATTATCTGAAGCTTTCCCCGGACAAGTAGGCCCTATTACCTTGATACATTTTGAACTATATATATTTGATTTCCACCCTGCATTTAGCTTTTTGAGATTAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.13

Weight (kDa)

5.29

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44590 AT5G44590 AT5G44600
fragaria_vesca	FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540
malus_domestica	MD00G1085200.v1.1 MD10G1220900.v1.1
prunus_persica	Prupe.4G123600_v2.0.a1 Prupe.4G123600_v2.0.a1
pyrus_communis	pycom05g21780 pycom10g18660
rosa_chinensis	RchiOBHm_Chr5g0022501
rosa_laevigata	RLG00000032666
rosa_multiflora	Rmu_sc0011329.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056540
rosa_rugosa	Rorug05G0074300 Rorug05G0074300
rosa_samantha	Rh5AG161100 Rh5BG160100 Rh5CG174400 Rh5DG160700
rosa_wichuraiana	Rw5G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
Acc16I	TGCGCA	1 cut(s)	447
AccI	GTMKAC	1 cut(s)	822
AclWI	GGATC	1 cut(s)	552
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	2 cut(s)	594, 870
AfaI	GTAC	1 cut(s)	234
AgsI	TTSAA	5 cut(s)	85, 166, 485, 712, 896
AluBI	AGCT	8 cut(s)	111, 242, 384, 443, 481, 566, 854, 930
AluI	AGCT	8 cut(s)	111, 242, 384, 443, 481, 566, 854, 930
AlwI	GGATC	1 cut(s)	552
AoxI	GGCC	3 cut(s)	95, 467, 871
ApeKI	GCWGC	2 cut(s)	443, 478
ApoI	RAATTY	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	407, 872
AsuC2I	CCSGG	2 cut(s)	94, 861
AsuHPI	GGTGA	3 cut(s)	605, 757, 785
AsuNHI	GCTAGC	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	407
BbvI	GCAGC	2 cut(s)	430, 490
BccI	CCATC	2 cut(s)	656, 758
BceAI	ACGGC	1 cut(s)	454
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BcnI	CCSGG	2 cut(s)	94, 861
BfaI	CTAG	1 cut(s)	381
BisI	GCNGC	2 cut(s)	444, 479
BlsI	GCNGC	2 cut(s)	445, 480
BmcAI	AGTACT	1 cut(s)	234
Bme1390I	CCNGG	2 cut(s)	94, 861
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	407, 872
BmrFI	CCNGG	2 cut(s)	94, 861
BmsI	GCATC	4 cut(s)	444, 586, 648, 714
BmtI	GCTAGC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	2 cut(s)	94, 861
BsaJI	CCNNGG	1 cut(s)	859
Bse118I	RCCGGY	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	859
BseGI	GGATG	2 cut(s)	376, 582
BseMII	CTCAG	2 cut(s)	74, 189
BseRI	GAGGAG	1 cut(s)	701
BseXI	GCAGC	2 cut(s)	430, 490
BshFI	GGCC	3 cut(s)	97, 469, 873
BsiSI	CCGG	4 cut(s)	68, 94, 830, 861
BslFI	GGGAC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	3 cut(s)	97, 469, 873
Bsp143I	GATC	1 cut(s)	544
BspANI	GGCC	3 cut(s)	97, 469, 873
BspCNI	CTCAG	2 cut(s)	73, 188
BspOI	GCTAGC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	552
BsrFI	RCCGGY	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	859
BssMI	GATC	1 cut(s)	544
BssNAI	GTATAC	1 cut(s)	823
Bst1107I	GTATAC	1 cut(s)	823
Bst4CI	ACNGT	2 cut(s)	681, 815
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstC8I	GCNNGC	5 cut(s)	23, 69, 382, 386, 637
BstDEI	CTNAG	2 cut(s)	60, 175
BstF5I	GGATG	2 cut(s)	376, 582
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	1 cut(s)	547
BstMBI	GATC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 454, 475, 765, 839
BstSCI	CCNGG	2 cut(s)	92, 859
BstV1I	GCAGC	2 cut(s)	430, 490
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BstZ17I	GTATAC	1 cut(s)	823
BsuRI	GGCC	3 cut(s)	97, 469, 873
BtsCI	GGATG	2 cut(s)	376, 582
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	279, 768
Cac8I	GCNNGC	5 cut(s)	23, 69, 382, 386, 637
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	407, 872
Csp6I	GTAC	1 cut(s)	233
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	2 cut(s)	60, 175
DpnI	GATC	1 cut(s)	546
DpnII	GATC	1 cut(s)	544
EaeI	YGGCCR	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	2 cut(s)	594, 870
EcoO109I	RGGNCCY	2 cut(s)	407, 872
EcoT22I	ATGCAT	1 cut(s)	601
FalI	AAGNNNNNCTT	2 cut(s)	723, 755
FaqI	GGGAC	1 cut(s)	383
FblI	GTMKAC	1 cut(s)	822
Fnu4HI	GCNGC	2 cut(s)	444, 479
FokI	GGATG	2 cut(s)	383, 569
Fsp4HI	GCNGC	2 cut(s)	444, 479
FspBI	CTAG	1 cut(s)	381
FspI	TGCGCA	1 cut(s)	447
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	2 cut(s)	444, 479
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	97, 469, 873
HapII	CCGG	4 cut(s)	68, 94, 830, 861
HhaI	GCGC	1 cut(s)	448
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	852
HinfI	GANTC	5 cut(s)	122, 154, 308, 511, 715
HpaII	CCGG	4 cut(s)	68, 94, 830, 861
HphI	GGTGA	3 cut(s)	605, 757, 785
Hpy166II	GTNNAC	5 cut(s)	208, 277, 649, 793, 823
Hpy188I	TCNGA	3 cut(s)	544, 661, 850
Hpy188III	TCNNGA	6 cut(s)	166, 291, 305, 508, 548, 624
Hpy8I	GTNNAC	5 cut(s)	208, 277, 649, 793, 823
HpyAV	CCTTC	3 cut(s)	398, 479, 618
HpyCH4III	ACNGT	2 cut(s)	681, 815
HpyCH4V	TGCA	6 cut(s)	145, 185, 325, 478, 599, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 454, 475, 765, 839
HpyF3I	CTNAG	2 cut(s)	60, 175
HspAI	GCGC	1 cut(s)	446
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	544
Lsp1109I	GCAGC	2 cut(s)	430, 490
LweI	GCATC	4 cut(s)	444, 586, 648, 714
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	3 cut(s)	254, 335, 691
MalI	GATC	1 cut(s)	546
MboI	GATC	1 cut(s)	544
MboII	GAAGA	4 cut(s)	227, 230, 233, 724
MflI	RGATCY	1 cut(s)	544
MluCI	AATT	4 cut(s)	161, 358, 707, 748
MlyI	GAGTC	2 cut(s)	131, 302
MmeI	TCCRAC	4 cut(s)	74, 522, 663, 684
MnlI	CCTC	6 cut(s)	136, 399, 428, 620, 679, 682
Mph1103I	ATGCAT	1 cut(s)	601
MroNI	GCCGGC	1 cut(s)	67
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	4 cut(s)	68, 94, 830, 861
MspR9I	CCNGG	2 cut(s)	94, 861
MwoI	GCNNNNNNNGC	5 cut(s)	142, 454, 475, 765, 839
NaeI	GCCGGC	1 cut(s)	69
NciI	CCSGG	2 cut(s)	94, 861
NdeII	GATC	1 cut(s)	544
NgoMIV	GCCGGC	1 cut(s)	67
NheI	GCTAGC	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	691
NsbI	TGCGCA	1 cut(s)	447
NsiI	ATGCAT	1 cut(s)	601
PdiI	GCCGGC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	154, 511, 715
PflFI	GACNNNGTC	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	445, 480
PleI	GAGTC	2 cut(s)	130, 302
PpsI	GAGTC	2 cut(s)	130, 302
PpuMI	RGGWCCY	1 cut(s)	407
PsiI	TTATAA	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	407
PspPI	GGNCC	2 cut(s)	407, 872
PspPPI	RGGWCCY	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	544
PsyI	GACNNNGTC	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	591
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	2 cut(s)	444, 479
Sau3AI	GATC	1 cut(s)	544
Sau96I	GGNCC	2 cut(s)	407, 872
ScaI	AGTACT	1 cut(s)	234
SchI	GAGTC	2 cut(s)	131, 302
ScrFI	CCNGG	2 cut(s)	94, 861
SfaNI	GCATC	4 cut(s)	444, 586, 648, 714
SinI	GGWCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	4 cut(s)	161, 358, 707, 748
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	92, 859
TaaI	ACNGT	2 cut(s)	681, 815
TaqI	TCGA	1 cut(s)	459
TasI	AATT	4 cut(s)	161, 358, 707, 748
TatI	WGTACW	1 cut(s)	232
TfiI	GAWTC	3 cut(s)	154, 511, 715
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	2 cut(s)	286, 775
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	2 cut(s)	443, 478
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	2 cut(s)	68, 516
TspRI	CASTG	2 cut(s)	286, 775
Tth111I	GACNNNGTC	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	822
XspI	CTAG	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.