Rroxscaffold_1G00056540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006278
Physical Location & Seq
Reverse (-)
78297796 .. 78302274
4479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056540.1

Sequence Viewer

Length: 1005 bp
ATGGCTCTCTCAACGAATAGCCTGCTTCTCCTACCCAAACGACTCACTCCAACTCAAACTCAGTCGCCGGCAACTTTTCATTTCAATCATTCCCGGCCTTATAACCATAGCTCTACGACAGAGTCCTCTGTTTCGCTTTGGTTGCATAATGAGAATCCAAAATTCAAGACCAACTCAGCCAATGCAGATAAGCAAGAAGTGGAAGTGAACGAGGAAGAAGAAGAATATCAAGTACTAACAGCTATAAGAAGCAGTTACAATGAAATTGTAATCGTGGACACTGCTCAATCAAGAATGTTGCTTCTTGACTCTACTCATAATGTGCATAGTATTCTTTACAAGCACCAGAAATGGACTAATTCGTATTGGGATGAGTTTGCTAGCTTGCCTCCTATTGTCCCAGAAGGTCCTATTGCCATTTTGGGCTTGGGTGGAGGAACAGCTGCGCATTTGATGCTCGACTTGTGGCCGTCTTTGCAGCTTGAAGGTTGGGAGATTGATGAAATTTTGATTCATAAAGCAAGAGAATATTTTGGGCTGTCGGATCTTGAGAAGCATACACAAGCTGGTGGCATACTTAACATCCATATTGGTGATGCATTTTCTCCTTCAGTTCGTATTTCTGGAGGATATGCTGGCATCATTGTTGACTTGTTTTCTGATGGAAGAGTTCTGCCACAGTTGGAGGAGGTCACTACTTGGTTGGAATTGAAGGATCTGCTGATGCCCAATGGTCGTCTTATGGTGAATTGTGGTGGCATAGATGGTACTGATGTAAATAATGGAATAGTTCATCCAAACAATACTGATGACAGTTGGGTATACAATCCGGCTATCAAGGCATTATCTGAAGCTTTCCCCGGACAAGTAAGCTGGAAGAAAATGCCAGCAAATTTTGGTGCAAATTATCTTGGACTGACTGGCCCTTTGCCTGAGTTTACTTCGTGGTCTGCTGCAGTACCAGGCCCCTTGACTGCCAATGTGAAGCAATGGAGACCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

36.98

Weight (kDa)

5.17

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 102
Acc16I TGCGCA 1 cut(s) 447
AccI GTMKAC 1 cut(s) 822
AclWI GGATC 2 cut(s) 552, 723
AcoI YGGCCR 1 cut(s) 467
AcsI RAATTY 3 cut(s) 161, 504, 892
AcuI CTGAAG 2 cut(s) 594, 870
AfaI GTAC 3 cut(s) 234, 769, 960
AgsI TTSAA 4 cut(s) 85, 166, 485, 712
AjnI CCWGG 1 cut(s) 961
AluBI AGCT 8 cut(s) 111, 242, 384, 443, 481, 566, 854, 873
AluI AGCT 8 cut(s) 111, 242, 384, 443, 481, 566, 854, 873
Alw26I GTCTC 1 cut(s) 988
AlwI GGATC 2 cut(s) 552, 723
AoxI GGCC 4 cut(s) 95, 467, 922, 964
ApeKI GCWGC 3 cut(s) 443, 478, 953
ApoI RAATTY 3 cut(s) 161, 504, 892
ArsI GACNNNNNNTTYG 2 cut(s) 910, 942
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 3 cut(s) 407, 923, 965
AsuC2I CCSGG 2 cut(s) 94, 861
AsuHPI GGTGA 2 cut(s) 605, 757
AsuNHI GCTAGC 1 cut(s) 380
AvaII GGWCC 1 cut(s) 407
BaeI ACNNNNGTAYC 2 cut(s) 759, 792
BbvI GCAGC 3 cut(s) 430, 490, 940
BccI CCATC 2 cut(s) 656, 758
BceAI ACGGC 1 cut(s) 454
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 1 cut(s) 963
BcnI CCSGG 2 cut(s) 94, 861
BcoDI GTCTC 1 cut(s) 988
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 954
BisI GCNGC 3 cut(s) 444, 479, 954
BlsI GCNGC 3 cut(s) 445, 480, 955
BmcAI AGTACT 1 cut(s) 234
Bme1390I CCNGG 3 cut(s) 94, 861, 963
Bme18I GGWCC 1 cut(s) 407
BmgT120I GGNCC 3 cut(s) 407, 923, 965
BmiI GGNNCC 1 cut(s) 967
BmrFI CCNGG 3 cut(s) 94, 861, 963
BmsI GCATC 4 cut(s) 444, 586, 648, 714
BmtI GCTAGC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 2 cut(s) 94, 861
BsaI GGTCTC 1 cut(s) 988
BsaJI CCNNGG 1 cut(s) 859
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 925
Bse3DI GCAATG 1 cut(s) 995
BseBI CCWGG 1 cut(s) 963
BseDI CCNNGG 1 cut(s) 859
BseGI GGATG 3 cut(s) 376, 582, 793
BseMI GCAATG 1 cut(s) 995
BseMII CTCAG 3 cut(s) 74, 189, 924
BseNI ACTGG 1 cut(s) 925
BseRI GAGGAG 1 cut(s) 701
BseXI GCAGC 3 cut(s) 430, 490, 940
BshFI GGCC 4 cut(s) 97, 469, 924, 966
BsiSI CCGG 4 cut(s) 68, 94, 830, 861
BslFI GGGAC 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 988
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 4 cut(s) 97, 469, 924, 966
Bso31I GGTCTC 1 cut(s) 988
Bsp143I GATC 2 cut(s) 544, 715
BspANI GGCC 4 cut(s) 97, 469, 924, 966
BspCNI CTCAG 3 cut(s) 73, 188, 925
BspLI GGNNCC 1 cut(s) 967
BspMAI CTGCAG 1 cut(s) 958
BspOI GCTAGC 1 cut(s) 384
BspPI GGATC 2 cut(s) 552, 723
BspTNI GGTCTC 1 cut(s) 988
BsrDI GCAATG 1 cut(s) 995
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 1 cut(s) 925
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 859
BssMI GATC 2 cut(s) 544, 715
BssNAI GTATAC 1 cut(s) 823
Bst1107I GTATAC 1 cut(s) 823
Bst2UI CCWGG 1 cut(s) 963
Bst4CI ACNGT 2 cut(s) 681, 815
Bst6I CTCTTC 1 cut(s) 661
BstAPI GCANNNNNTGC 1 cut(s) 454
BstC8I GCNNGC 6 cut(s) 23, 69, 382, 386, 637, 888
BstDEI CTNAG 3 cut(s) 60, 175, 933
BstF5I GGATG 3 cut(s) 376, 582, 793
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 2 cut(s) 547, 718
BstMAI GTCTC 1 cut(s) 988
BstMBI GATC 2 cut(s) 544, 715
BstMWI GCNNNNNNNGC 4 cut(s) 142, 454, 475, 839
BstNI CCWGG 1 cut(s) 963
BstSCI CCNGG 3 cut(s) 92, 859, 961
BstSFI CTRYAG 1 cut(s) 954
BstV1I GCAGC 3 cut(s) 430, 490, 940
BstX2I RGATCY 2 cut(s) 544, 715
BstYI RGATCY 2 cut(s) 544, 715
BstZ17I GTATAC 1 cut(s) 823
BsuRI GGCC 4 cut(s) 97, 469, 924, 966
BtsCI GGATG 3 cut(s) 376, 582, 793
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 6 cut(s) 23, 69, 382, 386, 637, 888
CfoI GCGC 1 cut(s) 448
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 3 cut(s) 407, 923, 965
Csp6I GTAC 3 cut(s) 233, 768, 959
CviAII CATG 1 cut(s) 999
CviQI GTAC 3 cut(s) 233, 768, 959
DdeI CTNAG 3 cut(s) 60, 175, 933
DpnI GATC 2 cut(s) 546, 717
DpnII GATC 2 cut(s) 544, 715
EaeI YGGCCR 1 cut(s) 467
Eam1104I CTCTTC 1 cut(s) 661
EarI CTCTTC 1 cut(s) 661
Eco31I GGTCTC 1 cut(s) 988
Eco47I GGWCC 1 cut(s) 407
Eco57I CTGAAG 2 cut(s) 594, 870
EcoO109I RGGNCCY 2 cut(s) 407, 965
EcoRII CCWGG 1 cut(s) 961
EcoT22I ATGCAT 1 cut(s) 601
FaeI CATG 1 cut(s) 1002
FaqI GGGAC 1 cut(s) 383
FatI CATG 1 cut(s) 998
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 3 cut(s) 444, 479, 954
FokI GGATG 3 cut(s) 383, 569, 780
Fsp4HI GCNGC 3 cut(s) 444, 479, 954
FspBI CTAG 1 cut(s) 381
FspI TGCGCA 1 cut(s) 447
GlaI GCGC 1 cut(s) 447
GluI GCNGC 3 cut(s) 444, 479, 954
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 4 cut(s) 97, 469, 924, 966
HapII CCGG 4 cut(s) 68, 94, 830, 861
HhaI GCGC 1 cut(s) 448
Hin1II CATG 1 cut(s) 1002
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 852
HinfI GANTC 5 cut(s) 42, 122, 154, 308, 511
HpaII CCGG 4 cut(s) 68, 94, 830, 861
HphI GGTGA 2 cut(s) 605, 757
Hpy166II GTNNAC 5 cut(s) 208, 277, 649, 823, 939
Hpy188I TCNGA 3 cut(s) 544, 661, 850
Hpy188III TCNNGA 5 cut(s) 166, 291, 305, 548, 624
Hpy8I GTNNAC 5 cut(s) 208, 277, 649, 823, 939
HpyAV CCTTC 4 cut(s) 398, 479, 618, 706
HpyCH4III ACNGT 2 cut(s) 681, 815
HpyCH4V TGCA 7 cut(s) 145, 185, 325, 478, 599, 902, 956
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 454, 475, 839
HpyF3I CTNAG 3 cut(s) 60, 175, 933
Hsp92II CATG 1 cut(s) 1002
HspAI GCGC 1 cut(s) 446
KroI GCCGGC 1 cut(s) 67
KroNI GCCGGC 1 cut(s) 69
Kzo9I GATC 2 cut(s) 544, 715
Lsp1109I GCAGC 3 cut(s) 430, 490, 940
LweI GCATC 4 cut(s) 444, 586, 648, 714
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 254, 691
MalI GATC 2 cut(s) 546, 717
MboI GATC 2 cut(s) 544, 715
MboII GAAGA 5 cut(s) 227, 230, 233, 678, 889
MflI RGATCY 2 cut(s) 544, 715
MluCI AATT 8 cut(s) 161, 264, 358, 504, 707, 748, 892, 904
MlyI GAGTC 3 cut(s) 36, 131, 302
MmeI TCCRAC 4 cut(s) 74, 522, 663, 684
MnlI CCTC 7 cut(s) 136, 205, 399, 428, 620, 679, 682
Mph1103I ATGCAT 1 cut(s) 601
MroNI GCCGGC 1 cut(s) 67
MseI TTAA 1 cut(s) 579
MslI CAYNNNNRTG 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 4 cut(s) 68, 94, 830, 861
MspR9I CCNGG 3 cut(s) 94, 861, 963
MvaI CCWGG 1 cut(s) 963
MwoI GCNNNNNNNGC 4 cut(s) 142, 454, 475, 839
NaeI GCCGGC 1 cut(s) 69
NciI CCSGG 2 cut(s) 94, 861
NdeII GATC 2 cut(s) 544, 715
NgoMIV GCCGGC 1 cut(s) 67
NheI GCTAGC 1 cut(s) 380
NlaIII CATG 1 cut(s) 1002
NlaIV GGNNCC 1 cut(s) 967
NmuCI GTSAC 1 cut(s) 691
NsbI TGCGCA 1 cut(s) 447
NsiI ATGCAT 1 cut(s) 601
PdiI GCCGGC 1 cut(s) 69
PfeI GAWTC 2 cut(s) 154, 511
PflFI GACNNNGTC 1 cut(s) 121
PkrI GCNGC 3 cut(s) 445, 480, 955
PleI GAGTC 3 cut(s) 36, 130, 302
PpsI GAGTC 3 cut(s) 36, 130, 302
PpuMI RGGWCCY 1 cut(s) 407
PsiI TTATAA 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 961
PspGI CCWGG 1 cut(s) 961
PspN4I GGNNCC 1 cut(s) 967
PspPI GGNCC 3 cut(s) 407, 923, 965
PspPPI RGGWCCY 1 cut(s) 407
PstI CTGCAG 1 cut(s) 958
PsuI RGATCY 2 cut(s) 544, 715
PsyI GACNNNGTC 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 3 cut(s) 234, 769, 960
RsaNI GTAC 3 cut(s) 233, 768, 959
RseI CAYNNNNRTG 1 cut(s) 591
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 3 cut(s) 444, 479, 954
Sau3AI GATC 2 cut(s) 544, 715
Sau96I GGNCC 3 cut(s) 407, 923, 965
ScaI AGTACT 1 cut(s) 234
SchI GAGTC 3 cut(s) 36, 131, 302
ScrFI CCNGG 3 cut(s) 94, 861, 963
SfaNI GCATC 4 cut(s) 444, 586, 648, 714
SfcI CTRYAG 1 cut(s) 954
SinI GGWCC 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 8 cut(s) 161, 264, 358, 504, 707, 748, 892, 904
SspI AATATT 1 cut(s) 530
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 3 cut(s) 92, 859, 961
TaaI ACNGT 2 cut(s) 681, 815
TaqI TCGA 1 cut(s) 459
TasI AATT 8 cut(s) 161, 264, 358, 504, 707, 748, 892, 904
TatI WGTACW 1 cut(s) 232
TfiI GAWTC 2 cut(s) 154, 511
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 3 cut(s) 443, 478, 953
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 5 cut(s) 68, 276, 503, 516, 782
TspRI CASTG 1 cut(s) 286
Tth111I GACNNNGTC 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 3 cut(s) 161, 504, 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 424
XmiI GTMKAC 1 cut(s) 822
XspI CTAG 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.