Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006278

Physical Location & Seq

Genomic Coordinates Forward (+)

16632215 .. 16636717

Gene Structure 4503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG160100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTCTCTCAACGAATAGCCTGCTTCTCCTACCCAAACTACTCGCTCCAACTCAAACTCAGTCGCCGGCCACTTTTCATTTCAATCATTCCCGGCCTTATAACCATAGCTCTACAGCAGAGTCCTCTGTTTCGCTTTGGTTGCATAATGAGAATCCAAAATTCAAGACTAACTCAGCCAATGCAGATAAGCAAGAAGTGGAAGTGAACAAGGAAGAAGAAGAATATCAAGTACTAACAGCTATAAGAAGCAGTTACAATGAAATTGTAATCGTGGACACTGCTCAAGCAAGAATGTTGCTTCTTGACTCTACTCATAATGTGCATAGTATTCTTTACAAGCACCAGAAATGGACTAATTCGTATTGGGATGAGTTTGCTAGCTTGCCTCCTATTGTCCCAGAAGGTCCTATTGCCATTTTGGGCTTGGGTGGAGGAACAGCTGCGCATTTGATGCTCGACTTGTGGCCGTCTTTGCAGCTTGAAGGTTGGGAGATTGATGAAATTTTGATTCACAAAGCAAGAGAATATTTTGGGCTGTCGGATCTTGAGAAGCATTCACATGCTGGTGGCATACTTAACATCCATATTGGTGATGCATTTTCTCCTTCAGTTCGTATTTCTGGAGGATATGCTGGTGAGATCCTTGTCTACATTGCCTTTTGCTTTACCTTGCTCACCTTTTTTTCTATTTGGGACATGGTGGATGGTCAAATTCAAGGACTTGCTTTACAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.51

Weight (kDa)

5.25

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44590 AT5G44590 AT5G44600
fragaria_vesca	FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540
malus_domestica	MD00G1085200.v1.1 MD10G1220900.v1.1
prunus_persica	Prupe.4G123600_v2.0.a1 Prupe.4G123600_v2.0.a1
pyrus_communis	pycom05g21780 pycom10g18660
rosa_chinensis	RchiOBHm_Chr5g0022501
rosa_laevigata	RLG00000032666
rosa_multiflora	Rmu_sc0011329.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056540
rosa_rugosa	Rorug05G0074300 Rorug05G0074300
rosa_samantha	Rh5AG161100 Rh5BG160100 Rh5CG174400 Rh5DG160700
rosa_wichuraiana	Rw5G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
Acc16I	TGCGCA	1 cut(s)	447
AccI	GTMKAC	1 cut(s)	651
AclWI	GGATC	2 cut(s)	552, 637
AcoI	YGGCCR	2 cut(s)	69, 467
AcsI	RAATTY	3 cut(s)	161, 504, 714
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	1 cut(s)	234
AgsI	TTSAA	4 cut(s)	85, 166, 485, 719
AluBI	AGCT	5 cut(s)	111, 242, 384, 443, 481
AluI	AGCT	5 cut(s)	111, 242, 384, 443, 481
AlwI	GGATC	2 cut(s)	552, 637
AoxI	GGCC	3 cut(s)	69, 95, 467
ApeKI	GCWGC	2 cut(s)	443, 478
ApoI	RAATTY	3 cut(s)	161, 504, 714
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	3 cut(s)	605, 650, 670
AsuNHI	GCTAGC	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	407
BbvI	GCAGC	2 cut(s)	430, 490
BccI	CCATC	1 cut(s)	701
BceAI	ACGGC	1 cut(s)	454
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	444, 479
BlsI	GCNGC	2 cut(s)	445, 480
BmcAI	AGTACT	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	444, 586
BmtI	GCTAGC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	270, 569
BpuMI	CCSGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	654
BseGI	GGATG	3 cut(s)	376, 582, 712
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	2 cut(s)	74, 189
BseXI	GCAGC	2 cut(s)	430, 490
BshFI	GGCC	3 cut(s)	71, 97, 469
BsiSI	CCGG	2 cut(s)	68, 94
BslFI	GGGAC	2 cut(s)	383, 710
BsmFI	GGGAC	2 cut(s)	383, 710
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	3 cut(s)	71, 97, 469
Bsp143I	GATC	2 cut(s)	544, 642
BspANI	GGCC	3 cut(s)	71, 97, 469
BspCNI	CTCAG	2 cut(s)	73, 188
BspOI	GCTAGC	1 cut(s)	384
BspPI	GGATC	2 cut(s)	552, 637
BsrDI	GCAATG	1 cut(s)	654
BsrFI	RCCGGY	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	67
BssMI	GATC	2 cut(s)	544, 642
Bst4CI	ACNGT	1 cut(s)	735
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstC8I	GCNNGC	4 cut(s)	23, 69, 382, 386
BstDEI	CTNAG	2 cut(s)	60, 175
BstF5I	GGATG	3 cut(s)	376, 582, 712
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	2 cut(s)	547, 645
BstMBI	GATC	2 cut(s)	544, 642
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 454, 475
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	430, 490
BstX2I	RGATCY	2 cut(s)	544, 642
BstYI	RGATCY	2 cut(s)	544, 642
BsuRI	GGCC	3 cut(s)	71, 97, 469
BtsCI	GGATG	3 cut(s)	376, 582, 712
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	4 cut(s)	23, 69, 382, 386
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	2 cut(s)	563, 700
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	2 cut(s)	60, 175
DpnI	GATC	2 cut(s)	546, 644
DpnII	GATC	2 cut(s)	544, 642
EaeI	YGGCCR	2 cut(s)	69, 467
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	407
EcoT22I	ATGCAT	1 cut(s)	601
FaeI	CATG	2 cut(s)	566, 703
FaqI	GGGAC	2 cut(s)	383, 710
FatI	CATG	2 cut(s)	562, 699
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	2 cut(s)	444, 479
FokI	GGATG	3 cut(s)	383, 569, 719
Fsp4HI	GCNGC	2 cut(s)	444, 479
FspBI	CTAG	1 cut(s)	381
FspI	TGCGCA	1 cut(s)	447
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	2 cut(s)	444, 479
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	71, 97, 469
HapII	CCGG	2 cut(s)	68, 94
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	2 cut(s)	566, 703
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HinfI	GANTC	4 cut(s)	122, 154, 308, 511
HpaII	CCGG	2 cut(s)	68, 94
HphI	GGTGA	3 cut(s)	605, 650, 670
Hpy166II	GTNNAC	3 cut(s)	208, 277, 652
Hpy188I	TCNGA	1 cut(s)	544
Hpy188III	TCNNGA	4 cut(s)	166, 305, 548, 624
Hpy8I	GTNNAC	3 cut(s)	208, 277, 652
HpyAV	CCTTC	3 cut(s)	398, 479, 618
HpyCH4III	ACNGT	1 cut(s)	735
HpyCH4V	TGCA	5 cut(s)	145, 185, 325, 478, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 454, 475
HpyF3I	CTNAG	2 cut(s)	60, 175
Hsp92II	CATG	2 cut(s)	566, 703
HspAI	GCGC	1 cut(s)	446
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	544, 642
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	8 cut(s)	35, 81, 107, 359, 414, 552, 609, 621
Lsp1109I	GCAGC	2 cut(s)	430, 490
LweI	GCATC	2 cut(s)	444, 586
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	2 cut(s)	546, 644
MboI	GATC	2 cut(s)	544, 642
MboII	GAAGA	3 cut(s)	227, 230, 233
MflI	RGATCY	2 cut(s)	544, 642
MluCI	AATT	5 cut(s)	161, 264, 358, 504, 714
MlyI	GAGTC	2 cut(s)	131, 302
MmeI	TCCRAC	2 cut(s)	74, 522
MnlI	CCTC	4 cut(s)	136, 399, 428, 620
Mph1103I	ATGCAT	1 cut(s)	601
MroNI	GCCGGC	1 cut(s)	67
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	3 cut(s)	561, 567, 591
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	68, 94
MspR9I	CCNGG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	556
MwoI	GCNNNNNNNGC	3 cut(s)	142, 454, 475
NaeI	GCCGGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	544, 642
NgoMIV	GCCGGC	1 cut(s)	67
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	2 cut(s)	566, 703
NsbI	TGCGCA	1 cut(s)	447
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	1 cut(s)	566
PctI	GAATGC	1 cut(s)	556
PdiI	GCCGGC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	154, 511
PkrI	GCNGC	2 cut(s)	445, 480
PleI	GAGTC	2 cut(s)	130, 302
PpsI	GAGTC	2 cut(s)	130, 302
PpuMI	RGGWCCY	1 cut(s)	407
PsiI	TTATAA	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	407
PspPPI	RGGWCCY	1 cut(s)	407
PsuI	RGATCY	2 cut(s)	544, 642
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
RseI	CAYNNNNRTG	3 cut(s)	561, 567, 591
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	2 cut(s)	444, 479
Sau3AI	GATC	2 cut(s)	544, 642
Sau96I	GGNCC	1 cut(s)	407
ScaI	AGTACT	1 cut(s)	234
SchI	GAGTC	2 cut(s)	131, 302
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	9 cut(s)	113, 244, 386, 409, 445, 483, 490, 674, 683
SfaNI	GCATC	2 cut(s)	444, 586
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	3 cut(s)	561, 567, 591
SmlI	CTYRAG	2 cut(s)	285, 548
SmoI	CTYRAG	2 cut(s)	285, 548
Sse9I	AATT	5 cut(s)	161, 264, 358, 504, 714
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	735
TaqI	TCGA	1 cut(s)	459
TasI	AATT	5 cut(s)	161, 264, 358, 504, 714
TatI	WGTACW	1 cut(s)	232
TfiI	GAWTC	2 cut(s)	154, 511
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	2 cut(s)	443, 478
TspDTI	ATGAA	3 cut(s)	68, 276, 516
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	3 cut(s)	161, 504, 714
XceI	RCATGY	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	651
XspI	CTAG	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.