Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006278

Physical Location & Seq

Genomic Coordinates Forward (+)

17989793 .. 17991717

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCAGCTTTGTGTTCTCATTTGACCATCTCATCTCTACATTCACTTTCTCGATACGAAAATTGCTTCCTTTCATCCCAATTTTCAAAACCCTTGTTCCTAAACCAATCTCAGAACAAACCCAGATTCTCAATTTCATTTTGTCTCAAGCAAAGTAATCATGACGAGAGGCAAATTCAACAAGACTCTGCCAAAGAAGAAGAAGAAGAAGAAGAAGAGTATTGGGTTGTTACAGCAGTAAGAAGCAGATACAATGAGATTGTTATAGTGGATACTGCTTCTTCCAGATATCTTCTCCTTGATTCAACTAAGAATGTGCATAGTGTTATCAATAAAGGAGGCCAAAATTGGACTGGATCTTATTGGGATGAGTTTGCGAGTTTGCCGCCTATTATCCCTAATGGTCCCGTTGCAATCTACGGCTTGGGTGGTGGAACAGCTGCAAGATTGATGCTTGAGTTGTGGCCTACAATGCAGCTGGAAGGTTGGGAAATTGATGAAATTTTGATTGAGAAAGCAAGAGACTATCTCGGGTTGTCTGAGCTAGAGAAACCGACATCGAAAGGCGGTAGACTTTGTGTTCATGTAGATGATGCTCTCTCTCCTTCTCAAGATGTTTCAGGAAGATATGCTGGGATCATTGTTGATTTGTTTGCTGATGGGAAGGTCTTAGATCAGCTGCAAGAGGTCCCGATTTGGTTAGAGCTGGCTAGTAGGCTAATGCCTAACGGTCGCATTATGGTGAACTGTGCGGGAATCGAAACAGAACTTCAGAATGGAAAGCCTCAGTTGTTGTTAGATGACTCAGCCGGGATGTTGAATTCCACCGTCAAGATCTTGTCAGAAGCATTTCCTGGACAAGTTTGCTGGAAGAGAACACCAGATTCGGAAGGTCTCAACTTTCTTGCCTTAACCGGAGGCTTACCTGATCTTAGTGACTGGTCTAGTAAGGTTCCAGTTCGTTTTTGTGAAGTAGTGAAGCAATGGAAGCTTTGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

37.2

Weight (kDa)

4.86

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44590 AT5G44590 AT5G44600
fragaria_vesca	FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540
malus_domestica	MD00G1085200.v1.1 MD10G1220900.v1.1
prunus_persica	Prupe.4G123600_v2.0.a1 Prupe.4G123600_v2.0.a1
pyrus_communis	pycom05g21780 pycom10g18660
rosa_chinensis	RchiOBHm_Chr5g0022501
rosa_laevigata	RLG00000032666
rosa_multiflora	Rmu_sc0011329.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056540
rosa_rugosa	Rorug05G0074300 Rorug05G0074300
rosa_samantha	Rh5AG161100 Rh5BG160100 Rh5CG174400 Rh5DG160700
rosa_wichuraiana	Rw5G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	571
AciI	CCGC	3 cut(s)	386, 567, 752
AclWI	GGATC	2 cut(s)	364, 644
AcsI	RAATTY	3 cut(s)	174, 501, 820
AcuI	CTGAAG	1 cut(s)	755
AgsI	TTSAA	4 cut(s)	87, 179, 306, 820
AjnI	CCWGG	1 cut(s)	853
AluBI	AGCT	7 cut(s)	8, 440, 478, 544, 679, 706, 991
AluI	AGCT	7 cut(s)	8, 440, 478, 544, 679, 706, 991
Alw26I	GTCTC	3 cut(s)	149, 516, 899
AlwI	GGATC	2 cut(s)	364, 644
Ama87I	CYCGRG	1 cut(s)	530
AoxI	GGCC	2 cut(s)	340, 464
ApeKI	GCWGC	4 cut(s)	5, 440, 475, 679
ApoI	RAATTY	3 cut(s)	174, 501, 820
Asp700I	GAANNNNTTC	1 cut(s)	849
AspS9I	GGNCC	2 cut(s)	404, 688
AsuC2I	CCSGG	1 cut(s)	811
AsuHPI	GGTGA	1 cut(s)	754
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	2 cut(s)	404, 688
BbvI	GCAGC	4 cut(s)	17, 427, 487, 666
BccI	CCATC	2 cut(s)	35, 653
BceAI	ACGGC	1 cut(s)	436
BciT130I	CCWGG	1 cut(s)	855
BciVI	GTATCC	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	811
BcoDI	GTCTC	3 cut(s)	149, 516, 899
BfaI	CTAG	3 cut(s)	545, 711, 945
BfuI	GTATCC	1 cut(s)	265
BglII	AGATCT	1 cut(s)	834
BisI	GCNGC	5 cut(s)	6, 386, 441, 476, 680
BlsI	GCNGC	5 cut(s)	7, 387, 442, 477, 681
Bme1390I	CCNGG	2 cut(s)	811, 855
Bme18I	GGWCC	2 cut(s)	404, 688
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	404, 688
BmiI	GGNNCC	3 cut(s)	406, 690, 954
BmrFI	CCNGG	2 cut(s)	811, 855
BmsI	GCATC	2 cut(s)	441, 583
BplI	GAGNNNNNCTC	2 cut(s)	513, 545
BpuEI	CTTGAG	3 cut(s)	131, 476, 594
BpuMI	CCSGG	1 cut(s)	811
BsaI	GGTCTC	1 cut(s)	899
BsaWI	WCCGGW	1 cut(s)	914
Bse1I	ACTGG	3 cut(s)	358, 944, 956
Bse3DI	GCAATG	1 cut(s)	989
BseBI	CCWGG	1 cut(s)	855
BseGI	GGATG	3 cut(s)	74, 373, 819
BseMI	GCAATG	1 cut(s)	989
BseMII	CTCAG	4 cut(s)	125, 531, 800, 819
BseNI	ACTGG	3 cut(s)	358, 944, 956
BseXI	GCAGC	4 cut(s)	17, 427, 487, 666
BseYI	CCCAGC	1 cut(s)	632
Bsh1285I	CGRYCG	1 cut(s)	733
BshFI	GGCC	2 cut(s)	342, 466
BsiEI	CGRYCG	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	2 cut(s)	810, 915
BslFI	GGGAC	2 cut(s)	390, 674
BsmAI	GTCTC	3 cut(s)	149, 516, 899
BsmFI	GGGAC	2 cut(s)	390, 674
BsnI	GGCC	2 cut(s)	342, 466
Bso31I	GGTCTC	1 cut(s)	899
BsoBI	CYCGRG	1 cut(s)	530
Bsp143I	GATC	5 cut(s)	356, 636, 673, 834, 928
BspACI	CCGC	3 cut(s)	386, 567, 752
BspANI	GGCC	2 cut(s)	342, 466
BspCNI	CTCAG	4 cut(s)	124, 532, 799, 818
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	3 cut(s)	406, 690, 954
BspPI	GGATC	2 cut(s)	364, 644
BspTNI	GGTCTC	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	989
BsrI	ACTGG	3 cut(s)	358, 944, 956
BssMI	GATC	5 cut(s)	356, 636, 673, 834, 928
Bst2UI	CCWGG	1 cut(s)	855
Bst4CI	ACNGT	3 cut(s)	731, 749, 829
Bst6I	CTCTTC	2 cut(s)	210, 866
BstC8I	GCNNGC	1 cut(s)	708
BstDEI	CTNAG	7 cut(s)	111, 309, 540, 670, 786, 805, 932
BstF5I	GGATG	3 cut(s)	74, 373, 819
BstKTI	GATC	5 cut(s)	359, 639, 676, 837, 931
BstMAI	GTCTC	3 cut(s)	149, 516, 899
BstMBI	GATC	5 cut(s)	356, 636, 673, 834, 928
BstMCI	CGRYCG	1 cut(s)	733
BstMWI	GCNNNNNNNGC	2 cut(s)	472, 988
BstNI	CCWGG	1 cut(s)	855
BstSCI	CCNGG	2 cut(s)	809, 853
BstV1I	GCAGC	4 cut(s)	17, 427, 487, 666
BstX2I	RGATCY	2 cut(s)	356, 834
BstYI	RGATCY	2 cut(s)	356, 834
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	342, 466
BtsCI	GGATG	3 cut(s)	74, 373, 819
Cac8I	GCNNGC	1 cut(s)	708
CciI	TCATGA	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	404, 688
CviAII	CATG	2 cut(s)	161, 584
DdeI	CTNAG	7 cut(s)	111, 309, 540, 670, 786, 805, 932
DpnI	GATC	5 cut(s)	358, 638, 675, 836, 930
DpnII	GATC	5 cut(s)	356, 636, 673, 834, 928
Eam1104I	CTCTTC	2 cut(s)	210, 866
EarI	CTCTTC	2 cut(s)	210, 866
Eco31I	GGTCTC	1 cut(s)	899
Eco32I	GATATC	1 cut(s)	290
Eco47I	GGWCC	2 cut(s)	404, 688
Eco57I	CTGAAG	1 cut(s)	755
Eco88I	CYCGRG	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	688
EcoRI	GAATTC	1 cut(s)	820
EcoRII	CCWGG	1 cut(s)	853
EcoRV	GATATC	1 cut(s)	290
FaeI	CATG	2 cut(s)	164, 587
FaiI	YATR	6 cut(s)	162, 266, 321, 585, 630, 740
FaqI	GGGAC	2 cut(s)	390, 674
FatI	CATG	2 cut(s)	160, 583
FauI	CCCGC	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	5 cut(s)	6, 386, 441, 476, 680
FokI	GGATG	3 cut(s)	61, 380, 826
Fsp4HI	GCNGC	5 cut(s)	6, 386, 441, 476, 680
FspBI	CTAG	3 cut(s)	545, 711, 945
GluI	GCNGC	5 cut(s)	6, 386, 441, 476, 680
GsaI	CCCAGC	1 cut(s)	636
HaeIII	GGCC	2 cut(s)	342, 466
HapII	CCGG	2 cut(s)	810, 915
Hin1II	CATG	2 cut(s)	164, 587
HindIII	AAGCTT	1 cut(s)	989
HinfI	GANTC	6 cut(s)	126, 185, 302, 756, 803, 884
HpaII	CCGG	2 cut(s)	810, 915
HphI	GGTGA	1 cut(s)	754
Hpy166II	GTNNAC	2 cut(s)	572, 745
Hpy188I	TCNGA	5 cut(s)	114, 541, 774, 844, 889
Hpy188III	TCNNGA	7 cut(s)	51, 161, 285, 611, 621, 691, 832
Hpy8I	GTNNAC	2 cut(s)	572, 745
HpyAV	CCTTC	4 cut(s)	476, 615, 658, 884
HpyCH4III	ACNGT	3 cut(s)	731, 749, 829
HpyCH4V	TGCA	5 cut(s)	319, 413, 443, 475, 682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	472, 988
HpyF3I	CTNAG	7 cut(s)	111, 309, 540, 670, 786, 805, 932
Hsp92II	CATG	2 cut(s)	164, 587
Kzo9I	GATC	5 cut(s)	356, 636, 673, 834, 928
Lsp1109I	GCAGC	4 cut(s)	17, 427, 487, 666
LweI	GCATC	2 cut(s)	441, 583
MaeI	CTAG	3 cut(s)	545, 711, 945
MaeIII	GTNAC	2 cut(s)	229, 935
MalI	GATC	5 cut(s)	358, 638, 675, 836, 930
MboI	GATC	5 cut(s)	356, 636, 673, 834, 928
MflI	RGATCY	2 cut(s)	356, 834
MluCI	AATT	8 cut(s)	61, 80, 132, 174, 346, 492, 501, 820
MlyI	GAGTC	2 cut(s)	179, 797
MnlI	CCTC	5 cut(s)	162, 332, 679, 795, 911
MroXI	GAANNNNTTC	1 cut(s)	849
MseI	TTAA	1 cut(s)	911
MslI	CAYNNNNRTG	2 cut(s)	588, 740
MspA1I	CMGCKG	3 cut(s)	440, 478, 679
MspI	CCGG	2 cut(s)	810, 915
MspR9I	CCNGG	2 cut(s)	811, 855
MvaI	CCWGG	1 cut(s)	855
MwoI	GCNNNNNNNGC	2 cut(s)	472, 988
NciI	CCSGG	1 cut(s)	811
NdeII	GATC	5 cut(s)	356, 636, 673, 834, 928
NlaIII	CATG	2 cut(s)	164, 587
NlaIV	GGNNCC	3 cut(s)	406, 690, 954
NmuCI	GTSAC	1 cut(s)	935
PagI	TCATGA	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	4 cut(s)	126, 302, 756, 884
PfoI	TCCNGGA	1 cut(s)	853
PkrI	GCNGC	5 cut(s)	7, 387, 442, 477, 681
PleI	GAGTC	2 cut(s)	179, 797
PpsI	GAGTC	2 cut(s)	179, 797
PpuMI	RGGWCCY	1 cut(s)	688
Psp5II	RGGWCCY	1 cut(s)	688
Psp6I	CCWGG	1 cut(s)	853
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	853
PspN4I	GGNNCC	3 cut(s)	406, 690, 954
PspPI	GGNCC	2 cut(s)	404, 688
PspPPI	RGGWCCY	1 cut(s)	688
PsuI	RGATCY	2 cut(s)	356, 834
PvuII	CAGCTG	3 cut(s)	440, 478, 679
RseI	CAYNNNNRTG	2 cut(s)	588, 740
SaqAI	TTAA	1 cut(s)	911
SatI	GCNGC	5 cut(s)	6, 386, 441, 476, 680
Sau3AI	GATC	5 cut(s)	356, 636, 673, 834, 928
Sau96I	GGNCC	2 cut(s)	404, 688
SchI	GAGTC	2 cut(s)	179, 797
ScrFI	CCNGG	2 cut(s)	811, 855
SfaNI	GCATC	2 cut(s)	441, 583
SinI	GGWCC	2 cut(s)	404, 688
SmiMI	CAYNNNNRTG	2 cut(s)	588, 740
SmlI	CTYRAG	3 cut(s)	146, 455, 609
SmoI	CTYRAG	3 cut(s)	146, 455, 609
Sse9I	AATT	8 cut(s)	61, 80, 132, 174, 346, 492, 501, 820
SsiI	CCGC	3 cut(s)	386, 567, 752
SspMI	CTAG	3 cut(s)	545, 711, 945
StyD4I	CCNGG	2 cut(s)	809, 853
TaaI	ACNGT	3 cut(s)	731, 749, 829
TaqI	TCGA	3 cut(s)	52, 560, 759
TasI	AATT	8 cut(s)	61, 80, 132, 174, 346, 492, 501, 820
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	4 cut(s)	126, 302, 756, 884
Tru1I	TTAA	1 cut(s)	911
Tru9I	TTAA	1 cut(s)	911
TseFI	GTSAC	1 cut(s)	935
TseI	GCWGC	4 cut(s)	5, 440, 475, 679
Tsp45I	GTSAC	1 cut(s)	935
TspDTI	ATGAA	4 cut(s)	63, 126, 513, 572
VpaK11BI	GGWCC	2 cut(s)	404, 688
XapI	RAATTY	3 cut(s)	174, 501, 820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	571
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	3 cut(s)	545, 711, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.