Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006278

Physical Location & Seq

Genomic Coordinates Reverse (-)

24335407 .. 24339955

Gene Structure 4549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21780.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTCTGCTAACTAATAGCCTGCTAGTCCTACGCGCCCAACAACTCGGTCCGAGTCGAACTCACGCCCCTGCTACGAGTTATCTATACCATTCACATCCCTGTGGAGCAACATCCTCCGTTTCGCTTCGGTTGTGTCATGGGAACCGAAAAGTCAAGACACAAGCCTCCAATGCAGATAACCAAGCAGTGAAAGTGGAAGAGAAAAAGGAGGAGGAAGAAGAAGAATTTCAAGTTCTGACGGCCATGAAAAGCGGTTTCAACGACATTGTAATCGTCGACACTCCGAAATCGAGAATGCTGCTCCTCGATTCTTCTTATGATGTGCATAGCATTGTTTACAAGGACCAGAAGTGGACTGCTTTCTACTGGGATGAGTTTGCTAGCTTGCCTGCTATTGTTCCGAAAGGTCCTATTGCCATCCTTGGCTTGGGTGGTGGAACAGCTGCTCACCTGATGCTCGACTTGTGGCCGTCATTGCAGCTTGAAGGTTGGGAAATTGATCAAATTTTGATTGATAAAGCAAGAGAATATCTTGGACTGTCTGATCTTGAGAAGCATACTCAAGCTGGTGGTGTACTTAATGTTCATATTGGTGATGCCCTTTCTCCTTCAGTTAGTATTCCTGGAGGATATGCTGGCATTGTCATTGACTTGTTTTCTGATGGAAAAGTTTTGCCACAGTTGCAAGAGGTTACAACTTGGTTGGAATTAAAGATTCAGCTGATGCCCTATGGCCGCCTAATGGTGAATTGTGGCGGCATAGATGAACCATCTGATGTCAGGGATGGAACAGCTCATCCAAAAAATATATCCACCGATGACAGTTGGCTGCCAAATTCTACTATCCAGGCATTATCTAAAGCATTCCCCGGACAAGTAAGCTGGAAGAAAATGCCGCAAACTTTTGGTGAAAATTATCTCGCACTGACGGGACCTTTGCCAGAACTGAATTCATGGTCTGCTGCAGTAACAGGTCCTTTGACAGACAGTGTGAAGCAATGGAGACCATGCGAACCTTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

37.48

Weight (kDa)

5.29

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44590 AT5G44590 AT5G44600
fragaria_vesca	FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540 FvH4_3g13540
malus_domestica	MD00G1085200.v1.1 MD10G1220900.v1.1
prunus_persica	Prupe.4G123600_v2.0.a1 Prupe.4G123600_v2.0.a1
pyrus_communis	pycom05g21780 pycom10g18660
rosa_chinensis	RchiOBHm_Chr5g0022501
rosa_laevigata	RLG00000032666
rosa_multiflora	Rmu_sc0011329.1_g000005
rosa_roxburghii	Rroxscaffold_1G00056540
rosa_rugosa	Rorug05G0074300 Rorug05G0074300
rosa_samantha	Rh5AG161100 Rh5BG160100 Rh5CG174400 Rh5DG160700
rosa_wichuraiana	Rw5G014360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	36
AciI	CCGC	4 cut(s)	255, 739, 759, 899
AcoI	YGGCCR	3 cut(s)	243, 470, 736
AcsI	RAATTY	4 cut(s)	227, 507, 838, 952
AcuI	CTGAAG	1 cut(s)	597
AfaI	GTAC	1 cut(s)	579
AfiI	CCNNNNNNNGG	2 cut(s)	430, 745
AgsI	TTSAA	3 cut(s)	233, 262, 488
AjnI	CCWGG	2 cut(s)	625, 849
AloI	GAACNNNNNNTCC	2 cut(s)	784, 816
AluBI	AGCT	7 cut(s)	387, 446, 484, 569, 724, 797, 885
AluI	AGCT	7 cut(s)	387, 446, 484, 569, 724, 797, 885
Alw26I	GTCTC	1 cut(s)	1000
AoxI	GGCC	3 cut(s)	243, 470, 736
ApeKI	GCWGC	5 cut(s)	301, 446, 481, 832, 965
ApoI	RAATTY	4 cut(s)	227, 507, 838, 952
ArsI	GACNNNNNNTTYG	2 cut(s)	922, 954
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	5 cut(s)	50, 346, 410, 935, 977
AsuC2I	CCSGG	1 cut(s)	873
AsuHPI	GGTGA	4 cut(s)	443, 608, 760, 923
AsuNHI	GCTAGC	1 cut(s)	383
AvaII	GGWCC	5 cut(s)	50, 346, 410, 935, 977
BbvI	GCAGC	5 cut(s)	288, 433, 493, 819, 952
BccI	CCATC	4 cut(s)	428, 659, 781, 782
BceAI	ACGGC	2 cut(s)	258, 457
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciT130I	CCWGG	2 cut(s)	627, 851
BclI	TGATCA	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	873
BcoDI	GTCTC	1 cut(s)	1000
BfaI	CTAG	2 cut(s)	26, 384
BfmI	CTRYAG	1 cut(s)	966
BisI	GCNGC	8 cut(s)	302, 447, 482, 739, 760, 833, 899, 966
BlsI	GCNGC	8 cut(s)	303, 448, 483, 740, 761, 834, 900, 967
Bme1390I	CCNGG	3 cut(s)	627, 851, 873
Bme18I	GGWCC	5 cut(s)	50, 346, 410, 935, 977
BmgT120I	GGNCC	5 cut(s)	50, 346, 410, 935, 977
BmiI	GGNNCC	2 cut(s)	146, 936
BmrFI	CCNGG	3 cut(s)	627, 851, 873
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	3 cut(s)	447, 589, 717
BmtI	GCTAGC	1 cut(s)	387
BmuI	ACTGGG	1 cut(s)	379
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpmI	CTGGAG	1 cut(s)	648
BpuEI	CTTGAG	2 cut(s)	549, 572
BpuMI	CCSGG	1 cut(s)	873
BsaI	GGTCTC	1 cut(s)	1000
BsaJI	CCNNGG	2 cut(s)	424, 871
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 745
Bse1I	ACTGG	1 cut(s)	374
Bse3DI	GCAATG	2 cut(s)	476, 1007
BseBI	CCWGG	2 cut(s)	627, 851
BseDI	CCNNGG	2 cut(s)	424, 871
BseGI	GGATG	6 cut(s)	97, 113, 379, 420, 793, 799
BseLI	CCNNNNNNNGG	2 cut(s)	430, 745
BseMI	GCAATG	2 cut(s)	476, 1007
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	2 cut(s)	227, 296
BseXI	GCAGC	5 cut(s)	288, 433, 493, 819, 952
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	245, 472, 738
BsiSI	CCGG	1 cut(s)	873
BslFI	GGGAC	1 cut(s)	948
BslI	CCNNNNNNNGG	2 cut(s)	430, 745
BsmAI	GTCTC	1 cut(s)	1000
BsmFI	GGGAC	1 cut(s)	948
BsmI	GAATGC	2 cut(s)	303, 866
BsnI	GGCC	3 cut(s)	245, 472, 738
Bso31I	GGTCTC	1 cut(s)	1000
Bsp143I	GATC	2 cut(s)	502, 547
BspACI	CCGC	4 cut(s)	255, 739, 759, 899
BspANI	GGCC	3 cut(s)	245, 472, 738
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	146, 936
BspMAI	CTGCAG	1 cut(s)	970
BspOI	GCTAGC	1 cut(s)	387
BspTNI	GGTCTC	1 cut(s)	1000
BsrDI	GCAATG	2 cut(s)	476, 1007
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	424, 871
BssMI	GATC	2 cut(s)	502, 547
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	2 cut(s)	627, 851
Bst4CI	ACNGT	4 cut(s)	543, 684, 827, 992
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	5 cut(s)	23, 385, 389, 393, 640
BstF5I	GGATG	6 cut(s)	97, 113, 379, 420, 793, 799
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	2 cut(s)	505, 550
BstMAI	GTCTC	1 cut(s)	1000
BstMBI	GATC	2 cut(s)	502, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 478, 685
BstNI	CCWGG	2 cut(s)	627, 851
BstSCI	CCNGG	3 cut(s)	625, 849, 871
BstSFI	CTRYAG	1 cut(s)	966
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	5 cut(s)	288, 433, 493, 819, 952
BsuRI	GGCC	3 cut(s)	245, 472, 738
BtsCI	GGATG	6 cut(s)	97, 113, 379, 420, 793, 799
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	3 cut(s)	195, 926, 997
Cac8I	GCNNGC	5 cut(s)	23, 385, 389, 393, 640
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	5 cut(s)	50, 346, 410, 935, 977
CpoI	CGGWCCG	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	578
CspI	CGGWCCG	1 cut(s)	50
CviAII	CATG	4 cut(s)	140, 247, 957, 1011
CviQI	GTAC	1 cut(s)	578
DpnI	GATC	2 cut(s)	504, 549
DpnII	GATC	2 cut(s)	502, 547
EaeI	YGGCCR	3 cut(s)	243, 470, 736
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	424
Eco31I	GGTCTC	1 cut(s)	1000
Eco47I	GGWCC	5 cut(s)	50, 346, 410, 935, 977
Eco57I	CTGAAG	1 cut(s)	597
EcoO109I	RGGNCCY	3 cut(s)	410, 935, 977
EcoRI	GAATTC	1 cut(s)	952
EcoRII	CCWGG	2 cut(s)	625, 849
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	4 cut(s)	143, 250, 960, 1014
FaqI	GGGAC	1 cut(s)	948
FatI	CATG	4 cut(s)	139, 246, 956, 1010
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	8 cut(s)	302, 447, 482, 739, 760, 833, 899, 966
FokI	GGATG	6 cut(s)	84, 100, 386, 407, 786, 800
Fsp4HI	GCNGC	8 cut(s)	302, 447, 482, 739, 760, 833, 899, 966
FspBI	CTAG	2 cut(s)	26, 384
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	8 cut(s)	302, 447, 482, 739, 760, 833, 899, 966
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	3 cut(s)	245, 472, 738
HapII	CCGG	1 cut(s)	873
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	4 cut(s)	143, 250, 960, 1014
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	3 cut(s)	55, 311, 718
HpaII	CCGG	1 cut(s)	873
HphI	GGTGA	4 cut(s)	443, 608, 760, 923
Hpy166II	GTNNAC	4 cut(s)	280, 340, 357, 578
Hpy188I	TCNGA	7 cut(s)	54, 240, 288, 405, 547, 664, 778
Hpy188III	TCNNGA	4 cut(s)	157, 294, 551, 1026
Hpy8I	GTNNAC	4 cut(s)	280, 340, 357, 578
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	482, 621
HpyCH4III	ACNGT	4 cut(s)	543, 684, 827, 992
HpyCH4V	TGCA	5 cut(s)	176, 328, 481, 688, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 478, 685
Hsp92II	CATG	4 cut(s)	143, 250, 960, 1014
HspAI	GCGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	502, 547
LmnI	GCTCC	2 cut(s)	107, 309
Lsp1109I	GCAGC	5 cut(s)	288, 433, 493, 819, 952
LweI	GCATC	3 cut(s)	447, 589, 717
MaeI	CTAG	2 cut(s)	26, 384
MaeIII	GTNAC	2 cut(s)	694, 970
MalI	GATC	2 cut(s)	504, 549
MboI	GATC	2 cut(s)	502, 547
MboII	GAAGA	6 cut(s)	212, 230, 233, 236, 306, 901
MluCI	AATT	8 cut(s)	227, 498, 507, 710, 751, 838, 916, 952
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	7 cut(s)	127, 178, 205, 208, 317, 623, 685
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	2 cut(s)	582, 713
MslI	CAYNNNNRTG	2 cut(s)	102, 594
MspA1I	CMGCKG	2 cut(s)	446, 724
MspI	CCGG	1 cut(s)	873
MspR9I	CCNGG	3 cut(s)	627, 851, 873
Mva1269I	GAATGC	2 cut(s)	303, 866
MvaI	CCWGG	2 cut(s)	627, 851
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	3 cut(s)	173, 478, 685
NciI	CCSGG	1 cut(s)	873
NdeII	GATC	2 cut(s)	502, 547
NheI	GCTAGC	1 cut(s)	383
NlaIII	CATG	4 cut(s)	143, 250, 960, 1014
NlaIV	GGNNCC	2 cut(s)	146, 936
PctI	GAATGC	2 cut(s)	303, 866
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	311, 718
PfoI	TCCNGGA	1 cut(s)	625
PkrI	GCNGC	8 cut(s)	303, 448, 483, 740, 761, 834, 900, 967
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
PpuMI	RGGWCCY	3 cut(s)	410, 935, 977
Psp5II	RGGWCCY	3 cut(s)	410, 935, 977
Psp6I	CCWGG	2 cut(s)	625, 849
PspGI	CCWGG	2 cut(s)	625, 849
PspN4I	GGNNCC	2 cut(s)	146, 936
PspPI	GGNCC	5 cut(s)	50, 346, 410, 935, 977
PspPPI	RGGWCCY	3 cut(s)	410, 935, 977
PsrI	GAACNNNNNNTAC	2 cut(s)	570, 602
PstI	CTGCAG	1 cut(s)	970
PvuII	CAGCTG	2 cut(s)	446, 724
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
RseI	CAYNNNNRTG	2 cut(s)	102, 594
Rsr2I	CGGWCCG	1 cut(s)	50
RsrII	CGGWCCG	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	582, 713
SatI	GCNGC	8 cut(s)	302, 447, 482, 739, 760, 833, 899, 966
Sau3AI	GATC	2 cut(s)	502, 547
Sau96I	GGNCC	5 cut(s)	50, 346, 410, 935, 977
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	3 cut(s)	627, 851, 873
SfaNI	GCATC	3 cut(s)	447, 589, 717
SfcI	CTRYAG	1 cut(s)	966
SinI	GGWCC	5 cut(s)	50, 346, 410, 935, 977
SmiMI	CAYNNNNRTG	2 cut(s)	102, 594
SmlI	CTYRAG	2 cut(s)	551, 564
SmoI	CTYRAG	2 cut(s)	551, 564
Sse9I	AATT	8 cut(s)	227, 498, 507, 710, 751, 838, 916, 952
SsiI	CCGC	4 cut(s)	255, 739, 759, 899
SspMI	CTAG	2 cut(s)	26, 384
StyD4I	CCNGG	3 cut(s)	625, 849, 871
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	4 cut(s)	543, 684, 827, 992
TaqI	TCGA	5 cut(s)	58, 279, 293, 309, 462
TaqII	GACCGA	1 cut(s)	38
TasI	AATT	8 cut(s)	227, 498, 507, 710, 751, 838, 916, 952
TatI	WGTACW	1 cut(s)	577
TauI	GCSGC	3 cut(s)	741, 762, 901
TfiI	GAWTC	2 cut(s)	311, 718
Tru1I	TTAA	2 cut(s)	582, 713
Tru9I	TTAA	2 cut(s)	582, 713
TscAI	CASTG	3 cut(s)	195, 933, 997
TseI	GCWGC	5 cut(s)	301, 446, 481, 832, 965
TspDTI	ATGAA	4 cut(s)	263, 578, 783, 945
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	3 cut(s)	195, 933, 997
VpaK11BI	GGWCC	5 cut(s)	50, 346, 410, 935, 977
XapI	RAATTY	4 cut(s)	227, 507, 838, 952
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	2 cut(s)	26, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.