AT5G45040

Cytochrome C oxidase, cbb3-type, subunit III

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013171
Physical Location & Seq
Reverse (-)
18175371 .. 18176888
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45040.1

Sequence Viewer

Length: 528 bp
ATGAGACTTGTTCTCTCTGGTGCCTCTTCTTTCACCTCCAACCTTTTTTGTTCCTCCCAACAGGTCAATGGAAGAGGAAAAGAACTGAAAAACCCAATTTCTCTAAACCACAACAAAGATTTGGACTTTCTGTTAAAGAAGTTAGCTCCGCCACTCACGGCGGTTTTACTTGCTGTTTCACCCATCTGTTTCCCTCCAGAATCTCTTGGGCAGACTTTGGATATACAGAGAGGAGCTACATTGTTTAATAGAGCTTGTATCGGGTGTCATGATACAGGTGGAAACATTATTCAACCTGGTGCAACGCTTTTCACAAAAGACCTCGAAAGAAATGGAGTTGATACTGAGGAAGAAATATATCGTGTTACCTACTTTGGAAAGGGAAGAATGCCGGGATTTGGTGAGAAATGCACACCGAGAGGACAATGTACCTTTGGACCGCGGTTGCAGGACGAAGAAATCAAGCTTCTCGCTGAATTTGTAAAGTTTCAAGCTGACCAAGGCTGGCCAACTGTATCTACGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Cytochrome_CBB3

Protein Analysis

175

Amino Acids

19.21

Weight (kDa)

6.72

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrome_CBB3 PF13442 74 - 139 1.9e-09 Cytochrome C oxidase, cbb3-type, subunit III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45040
fragaria_vesca FvH4_3g12220 FvH4_3g12220
malus_domestica MD05G1252700.v1.1 MD10G1233800.v1.1
prunus_persica Prupe.4G111200_v2.0.a1
pyrus_communis pycom05g23080
rosa_chinensis RchiOBHm_Chr5g0020011
rosa_laevigata RLG00000032493
rosa_multiflora Rmu_sc0002250.1_g000004
rosa_roxburghii Rroxscaffold_1G00058180
rosa_rugosa Rorug05G0056300 Rorug05G0056300
rosa_samantha Rh5AG146400 Rh5BG145900 Rh5CG157300 Rh5DG145300
rosa_wichuraiana Rw5G012930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccII CGCG 1 cut(s) 442
AciI CCGC 4 cut(s) 149, 161, 440, 442
AcoI YGGCCR 1 cut(s) 506
AcsI RAATTY 1 cut(s) 476
AfaI GTAC 1 cut(s) 430
AfiI CCNNNNNNNGG 1 cut(s) 398
AgsI TTSAA 2 cut(s) 293, 491
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 5 cut(s) 146, 236, 254, 466, 494
AluI AGCT 5 cut(s) 146, 236, 254, 466, 494
AoxI GGCC 1 cut(s) 506
ApoI RAATTY 1 cut(s) 476
AspS9I GGNCC 1 cut(s) 437
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 3 cut(s) 25, 171, 413
AvaII GGWCC 1 cut(s) 437
BalI TGGCCA 1 cut(s) 508
BanI GGYRCC 1 cut(s) 20
BccI CCATC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 297
BcnI CCSGG 1 cut(s) 393
BfaI CTAG 1 cut(s) 526
Bme1390I CCNGG 2 cut(s) 297, 393
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 297, 393
BpmI CTGGAG 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 393
BsaJI CCNNGG 2 cut(s) 440, 499
Bsc4I CCNNNNNNNGG 1 cut(s) 398
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 440, 499
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 1 cut(s) 508
BshNI GGYRCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 392
BslI CCNNNNNNNGG 1 cut(s) 398
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 1 cut(s) 508
BspACI CCGC 4 cut(s) 149, 161, 440, 442
BspANI GGCC 1 cut(s) 508
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 1 cut(s) 442
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 440, 499
BssT1I CCWWGG 1 cut(s) 499
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 514
Bst6I CTCTTC 2 cut(s) 31, 67
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 440
BstFNI CGCG 1 cut(s) 442
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 295, 391
BstUI CGCG 1 cut(s) 442
BsuRI GGCC 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 440
Cac8I GCNNGC 1 cut(s) 506
CciI TCATGA 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 437
Cfr42I CCGCGG 1 cut(s) 443
CsiI ACCWGGT 1 cut(s) 295
Csp6I GTAC 1 cut(s) 429
CviAII CATG 1 cut(s) 269
CviJI RGCY 7 cut(s) 146, 236, 254, 466, 494, 504, 508
CviKI_1 RGCY 7 cut(s) 146, 236, 254, 466, 494, 504, 508
CviQI GTAC 1 cut(s) 429
DdeI CTNAG 1 cut(s) 345
EaeI YGGCCR 1 cut(s) 506
Eam1104I CTCTTC 2 cut(s) 31, 67
EarI CTCTTC 2 cut(s) 31, 67
EciI GGCGGA 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 499
FaeI CATG 1 cut(s) 272
FaiI YATR 3 cut(s) 224, 270, 358
FatI CATG 1 cut(s) 268
FspBI CTAG 1 cut(s) 526
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 508
HapII CCGG 1 cut(s) 392
Hin1II CATG 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 392
HphI GGTGA 3 cut(s) 25, 171, 413
Hpy188III TCNNGA 2 cut(s) 197, 269
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4V TGCA 3 cut(s) 302, 411, 448
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 1 cut(s) 272
KspI CCGCGG 1 cut(s) 443
LmnI GCTCC 2 cut(s) 151, 233
LpnPI CCDG 9 cut(s) 3, 47, 210, 261, 282, 309, 405, 434, 490
MabI ACCWGGT 1 cut(s) 295
MaeI CTAG 1 cut(s) 526
MaeIII GTNAC 1 cut(s) 364
MboII GAAGA 5 cut(s) 18, 84, 362, 396, 467
MlsI TGGCCA 1 cut(s) 508
MluCI AATT 2 cut(s) 96, 476
MluNI TGGCCA 1 cut(s) 508
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 9 cut(s) 34, 46, 64, 68, 204, 224, 332, 340, 413
Mox20I TGGCCA 1 cut(s) 508
MscI TGGCCA 1 cut(s) 508
MseI TTAA 2 cut(s) 134, 246
Msp20I TGGCCA 1 cut(s) 508
MspA1I CMGCKG 1 cut(s) 442
MspI CCGG 1 cut(s) 392
MspR9I CCNGG 2 cut(s) 297, 393
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 297
MvnI CGCG 1 cut(s) 442
NciI CCSGG 1 cut(s) 393
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 22
PagI TCATGA 1 cut(s) 268
PctI GAATGC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 437
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
SacII CCGCGG 1 cut(s) 443
SaqAI TTAA 2 cut(s) 134, 246
Sau96I GGNCC 1 cut(s) 437
ScrFI CCNGG 2 cut(s) 297, 393
SexAI ACCWGGT 1 cut(s) 295
Sfr303I CCGCGG 1 cut(s) 443
SgrBI CCGCGG 1 cut(s) 443
SinI GGWCC 1 cut(s) 437
Sse9I AATT 2 cut(s) 96, 476
SsiI CCGC 4 cut(s) 149, 161, 440, 442
SspMI CTAG 1 cut(s) 526
StyD4I CCNGG 2 cut(s) 295, 391
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 1 cut(s) 514
TaqI TCGA 1 cut(s) 324
TasI AATT 2 cut(s) 96, 476
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 134, 246
Tru9I TTAA 2 cut(s) 134, 246
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XspI CTAG 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.