Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002250.1

Orthogroup ID

OG0013171

Physical Location & Seq

Genomic Coordinates Reverse (-)

35151 .. 38227

Gene Structure 3077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002250.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggggggagaattcggggacaaatggggaatggggatggggatccccaatctttgctatctaagattggggatggggcggggatgtcttccattaaagaaagggatgatgcagcttacgtctttgatatcaaacaccaataatgctgcctatttcttcccaaggtgtgcagtgaagcaacaacacatcaacccaattcctcagaagcaagaacaatgtaagcttttaaggagcttggctccacctctaatggccgcagctctggccttatctccaatctgcgttacccctgtctcacatgcccaaaccattgatgttcagagaggagctgcgttgtttcgtactacttgcattggttgtcatgatgcaggtggaaacataatacaaccaggtgcaacactctttactaaagatctacaaagaaatggagttgacacagaggaggagatatatcgtgttacttactttggcaagggaagaatgccaggttttggtcagaactgcacaccgaggggccaatgcacatttggagctcgattgcaggacgaggacattaagcttttagctgagtttgtcaagttacaggctgatcaagactggagaaataatctaagtaatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

Cytochrome_CBB3

Protein Analysis

207

Amino Acids

22.77

Weight (kDa)

8.75

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45040
fragaria_vesca	FvH4_3g12220 FvH4_3g12220
malus_domestica	MD05G1252700.v1.1 MD10G1233800.v1.1
prunus_persica	Prupe.4G111200_v2.0.a1
pyrus_communis	pycom05g23080
rosa_chinensis	RchiOBHm_Chr5g0020011
rosa_laevigata	RLG00000032493
rosa_multiflora	Rmu_sc0002250.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058180
rosa_rugosa	Rorug05G0056300 Rorug05G0056300
rosa_samantha	Rh5AG146400 Rh5BG145900 Rh5CG157300 Rh5DG145300
rosa_wichuraiana	Rw5G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	491
AciI	CCGC	2 cut(s)	79, 255
AclWI	GGATC	2 cut(s)	37, 50
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	11
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	491
AjnI	CCWGG	2 cut(s)	388, 484
AluBI	AGCT	8 cut(s)	115, 223, 234, 260, 329, 533, 559, 566
AluI	AGCT	8 cut(s)	115, 223, 234, 260, 329, 533, 559, 566
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	37, 50
AoxI	GGCC	3 cut(s)	252, 264, 514
ApeKI	GCWGC	4 cut(s)	112, 146, 257, 329
ApoI	RAATTY	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	514
BamHI	GGATCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	4 cut(s)	124, 133, 269, 316
BccI	CCATC	2 cut(s)	31, 67
BciT130I	CCWGG	2 cut(s)	390, 486
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	298
BfuAI	ACCTGC	1 cut(s)	359
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	5 cut(s)	113, 147, 255, 258, 330
BlsI	GCNGC	5 cut(s)	114, 148, 256, 259, 331
Bme1390I	CCNGG	2 cut(s)	390, 486
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	3 cut(s)	44, 240, 515
BmrFI	CCNGG	2 cut(s)	390, 486
BmsI	GCATC	2 cut(s)	99, 355
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	1 cut(s)	619
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	161, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	602
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	390, 486
BseDI	CCNNGG	2 cut(s)	161, 509
BseGI	GGATG	4 cut(s)	42, 78, 89, 111
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	2 cut(s)	215, 558
BseNI	ACTGG	1 cut(s)	602
BseRI	GAGGAG	3 cut(s)	339, 455, 458
BseXI	GCAGC	4 cut(s)	124, 133, 269, 316
BsgI	GTGCAG	2 cut(s)	189, 487
BshFI	GGCC	3 cut(s)	254, 266, 516
BsiHKAI	GWGCWC	1 cut(s)	535
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	3 cut(s)	254, 266, 516
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	3 cut(s)	42, 412, 589
BspACI	CCGC	2 cut(s)	79, 255
BspANI	GGCC	3 cut(s)	254, 266, 516
BspCNI	CTCAG	2 cut(s)	214, 559
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	3 cut(s)	44, 240, 515
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	37, 50
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	2 cut(s)	161, 509
BssMI	GATC	3 cut(s)	42, 412, 589
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	2 cut(s)	390, 486
BstDEI	CTNAG	4 cut(s)	62, 201, 567, 611
BstF5I	GGATG	4 cut(s)	42, 78, 89, 111
BstKTI	GATC	3 cut(s)	45, 415, 592
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	3 cut(s)	42, 412, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	390, 486
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	388, 484
BstV1I	GCAGC	4 cut(s)	124, 133, 269, 316
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	2 cut(s)	42, 412
BstYI	RGATCY	2 cut(s)	42, 412
BsuRI	GGCC	3 cut(s)	254, 266, 516
BtsCI	GGATG	4 cut(s)	42, 78, 89, 111
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	359
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	514
CsiI	ACCWGGT	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	299, 362
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	4 cut(s)	62, 201, 567, 611
DpnI	GATC	3 cut(s)	44, 414, 591
DpnII	GATC	3 cut(s)	42, 412, 589
EaeI	YGGCCR	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	535
Eco32I	GATATC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	533
EcoICRI	GAGCTC	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	388, 484
EcoRV	GATATC	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	2 cut(s)	302, 365
FaiI	YATR	4 cut(s)	300, 363, 380, 451
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	298, 361
FauI	CCCGC	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	5 cut(s)	113, 147, 255, 258, 330
FokI	GGATG	4 cut(s)	49, 85, 96, 118
FriOI	GRGCYC	1 cut(s)	535
Fsp4HI	GCNGC	5 cut(s)	113, 147, 255, 258, 330
GluI	GCNGC	5 cut(s)	113, 147, 255, 258, 330
GsuI	CTGGAG	1 cut(s)	619
HaeIII	GGCC	3 cut(s)	254, 266, 516
Hin1II	CATG	2 cut(s)	302, 365
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	2 cut(s)	221, 557
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	3 cut(s)	204, 321, 498
Hpy188III	TCNNGA	2 cut(s)	362, 593
Hpy8I	GTNNAC	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	8 cut(s)	112, 170, 351, 368, 395, 504, 522, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	4 cut(s)	62, 201, 567, 611
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	302, 365
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	3 cut(s)	42, 412, 589
LmnI	GCTCC	4 cut(s)	231, 244, 326, 530
Lsp1109I	GCAGC	4 cut(s)	124, 133, 269, 316
LweI	GCATC	2 cut(s)	99, 355
MabI	ACCWGGT	1 cut(s)	388
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	3 cut(s)	283, 457, 579
MalI	GATC	3 cut(s)	44, 414, 591
MboI	GATC	3 cut(s)	42, 412, 589
MboII	GAAGA	3 cut(s)	80, 148, 489
MflI	RGATCY	2 cut(s)	42, 412
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	2 cut(s)	11, 195
MnlI	CCTC	7 cut(s)	210, 255, 317, 433, 436, 504, 541
MseI	TTAA	3 cut(s)	95, 227, 555
MspR9I	CCNGG	2 cut(s)	390, 486
Mva1269I	GAATGC	1 cut(s)	486
MvaI	CCWGG	2 cut(s)	390, 486
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	3 cut(s)	42, 412, 589
NlaIII	CATG	2 cut(s)	302, 365
NlaIV	GGNNCC	3 cut(s)	44, 240, 515
NspI	RCATGY	1 cut(s)	302
PagI	TCATGA	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	359
PctI	GAATGC	1 cut(s)	486
PflMI	CCANNNNNTGG	1 cut(s)	491
PkrI	GCNGC	5 cut(s)	114, 148, 256, 259, 331
Psp124BI	GAGCTC	1 cut(s)	535
Psp6I	CCWGG	2 cut(s)	388, 484
PspGI	CCWGG	2 cut(s)	388, 484
PspN4I	GGNNCC	3 cut(s)	44, 240, 515
PspPI	GGNCC	1 cut(s)	514
PsuI	RGATCY	2 cut(s)	42, 412
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	535
SaqAI	TTAA	3 cut(s)	95, 227, 555
SatI	GCNGC	5 cut(s)	113, 147, 255, 258, 330
Sau3AI	GATC	3 cut(s)	42, 412, 589
Sau96I	GGNCC	1 cut(s)	514
ScrFI	CCNGG	2 cut(s)	390, 486
SduI	GDGCHC	1 cut(s)	535
SexAI	ACCWGGT	1 cut(s)	388
SfaNI	GCATC	2 cut(s)	99, 355
Sse9I	AATT	2 cut(s)	11, 195
SsiI	CCGC	2 cut(s)	79, 255
SstI	GAGCTC	1 cut(s)	535
StyD4I	CCNGG	2 cut(s)	388, 484
StyI	CCWWGG	1 cut(s)	161
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	535
TasI	AATT	2 cut(s)	11, 195
TauI	GCSGC	1 cut(s)	257
Tru1I	TTAA	3 cut(s)	95, 227, 555
Tru9I	TTAA	3 cut(s)	95, 227, 555
TscAI	CASTG	1 cut(s)	177
TseI	GCWGC	4 cut(s)	112, 146, 257, 329
TspRI	CASTG	1 cut(s)	177
Van91I	CCANNNNNTGG	1 cut(s)	491
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.