Rh5DG145300

Cytochrome c6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013171
Physical Location & Seq
Forward (+)
14865902 .. 14869192
3291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG145300.1

Sequence Viewer

Length: 519 bp
ATGATGCAGCTTACGTCTTTGATATCAAACACCAATAATGCTGCCTATTTCTTCCCAAAGTGTGCAGTGAAGCAACAACACATCAACCCAATTCCTCAGAAGCAAGAACAATGTAAGCTTTTAAGGAGCTTGGCTCCACCTCTAATGGCTGCAGCTCTGGCCTTATCTCCAATCTGCGTTACCCCTGTCTCACATGCCCAAACCATTGATGTTCAGAGAGGAGCTGCGTTGTTTCGTACTACTTGCATTGGTTGTCATGATGCAGGTGGAAACATAATACAACCAGGTGCAACACTCTTTACTAAAGATCTACAAAGAAATGGAGTTGACACAGAGGAGGAGATATATCGTGTTACTTACTTTGGCAAGGGAAGAATGCCAGGTTTTGGTCAGAACTGCACACCGAGGGGCCAATGCACATTTGGAGCTCGATTGCAGGACGAGGACATTAAGCTTTTAGCTGAGTTTGTCAAGTTACAGGCTGATCAAGACTGGAGAAATAATCTAAGTAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Cytochrome_CBB3

Protein Analysis

172

Amino Acids

19.01

Weight (kDa)

8.18

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrome_CBB3 PF13442 71 - 135 9.1e-10 Cytochrome C oxidase, cbb3-type, subunit III
Cytochrom_C PF00034 71 - 158 9e-06 Cytochrome c
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45040
fragaria_vesca FvH4_3g12220 FvH4_3g12220
malus_domestica MD05G1252700.v1.1 MD10G1233800.v1.1
prunus_persica Prupe.4G111200_v2.0.a1
pyrus_communis pycom05g23080
rosa_chinensis RchiOBHm_Chr5g0020011
rosa_laevigata RLG00000032493
rosa_multiflora Rmu_sc0002250.1_g000004
rosa_roxburghii Rroxscaffold_1G00058180
rosa_rugosa Rorug05G0056300 Rorug05G0056300
rosa_samantha Rh5AG146400 Rh5BG145900 Rh5CG157300 Rh5DG145300
rosa_wichuraiana Rw5G012930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 254
AccB7I CCANNNNNTGG 1 cut(s) 386
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 386
AjnI CCWGG 2 cut(s) 283, 379
AluBI AGCT 8 cut(s) 10, 118, 129, 155, 224, 428, 454, 461
AluI AGCT 8 cut(s) 10, 118, 129, 155, 224, 428, 454, 461
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 1 cut(s) 193
AoxI GGCC 2 cut(s) 159, 409
ApeKI GCWGC 5 cut(s) 7, 41, 149, 152, 224
AspS9I GGNCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 430
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 5 cut(s) 19, 28, 136, 164, 211
BciT130I CCWGG 2 cut(s) 285, 381
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 193
BfmI CTRYAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 254
BglII AGATCT 1 cut(s) 307
BisI GCNGC 5 cut(s) 8, 42, 150, 153, 225
BlsI GCNGC 5 cut(s) 9, 43, 151, 154, 226
Bme1390I CCNGG 2 cut(s) 285, 381
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 2 cut(s) 135, 410
BmrFI CCNGG 2 cut(s) 285, 381
BmsI GCATC 1 cut(s) 250
BplI GAGNNNNNCTC 2 cut(s) 118, 150
BpmI CTGGAG 1 cut(s) 514
BsaJI CCNNGG 1 cut(s) 404
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 497
BseBI CCWGG 2 cut(s) 285, 381
BseDI CCNNGG 1 cut(s) 404
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 2 cut(s) 110, 453
BseNI ACTGG 1 cut(s) 497
BseRI GAGGAG 3 cut(s) 234, 350, 353
BseXI GCAGC 5 cut(s) 19, 28, 136, 164, 211
BsgI GTGCAG 2 cut(s) 84, 382
BshFI GGCC 2 cut(s) 161, 411
BsiHKAI GWGCWC 1 cut(s) 430
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 2 cut(s) 161, 411
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 2 cut(s) 307, 484
BspANI GGCC 2 cut(s) 161, 411
BspCNI CTCAG 2 cut(s) 109, 454
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 135, 410
BspMAI CTGCAG 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 2 cut(s) 307, 484
Bst2UI CCWGG 2 cut(s) 285, 381
BstDEI CTNAG 3 cut(s) 96, 462, 506
BstKTI GATC 2 cut(s) 310, 487
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 307, 484
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 2 cut(s) 285, 381
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 283, 379
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 5 cut(s) 19, 28, 136, 164, 211
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 2 cut(s) 161, 411
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
BveI ACCTGC 1 cut(s) 254
CciI TCATGA 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 409
CsiI ACCWGGT 1 cut(s) 283
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 194, 257
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 3 cut(s) 96, 462, 506
DpnI GATC 2 cut(s) 309, 486
DpnII GATC 2 cut(s) 307, 484
Ecl136II GAGCTC 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 430
Eco32I GATATC 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 283, 379
EcoRV GATATC 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 430
FaeI CATG 2 cut(s) 197, 260
FaiI YATR 4 cut(s) 195, 258, 275, 346
FatI CATG 2 cut(s) 193, 256
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 5 cut(s) 8, 42, 150, 153, 225
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 5 cut(s) 8, 42, 150, 153, 225
GluI GCNGC 5 cut(s) 8, 42, 150, 153, 225
GsuI CTGGAG 1 cut(s) 514
HaeIII GGCC 2 cut(s) 161, 411
Hin1II CATG 2 cut(s) 197, 260
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 2 cut(s) 116, 452
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 99, 216, 393
Hpy188III TCNNGA 2 cut(s) 257, 488
Hpy8I GTNNAC 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 9 cut(s) 7, 65, 152, 246, 263, 290, 399, 417, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 3 cut(s) 96, 462, 506
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 2 cut(s) 197, 260
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 2 cut(s) 307, 484
LmnI GCTCC 4 cut(s) 126, 139, 221, 425
Lsp1109I GCAGC 5 cut(s) 19, 28, 136, 164, 211
LweI GCATC 1 cut(s) 250
MabI ACCWGGT 1 cut(s) 283
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 3 cut(s) 178, 352, 474
MalI GATC 2 cut(s) 309, 486
MboI GATC 2 cut(s) 307, 484
MboII GAAGA 2 cut(s) 43, 384
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 1 cut(s) 90
MnlI CCTC 7 cut(s) 105, 150, 212, 328, 331, 399, 436
MseI TTAA 2 cut(s) 122, 450
MspR9I CCNGG 2 cut(s) 285, 381
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 2 cut(s) 285, 381
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 2 cut(s) 307, 484
NlaIII CATG 2 cut(s) 197, 260
NlaIV GGNNCC 2 cut(s) 135, 410
NspI RCATGY 1 cut(s) 197
PagI TCATGA 1 cut(s) 256
PaqCI CACCTGC 1 cut(s) 254
PctI GAATGC 1 cut(s) 381
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 5 cut(s) 9, 43, 151, 154, 226
Psp124BI GAGCTC 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 283, 379
PspGI CCWGG 2 cut(s) 283, 379
PspN4I GGNNCC 2 cut(s) 135, 410
PspPI GGNCC 1 cut(s) 409
PstI CTGCAG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SacI GAGCTC 1 cut(s) 430
SaqAI TTAA 2 cut(s) 122, 450
SatI GCNGC 5 cut(s) 8, 42, 150, 153, 225
Sau3AI GATC 2 cut(s) 307, 484
Sau96I GGNCC 1 cut(s) 409
ScrFI CCNGG 2 cut(s) 285, 381
SduI GDGCHC 1 cut(s) 430
SexAI ACCWGGT 1 cut(s) 283
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 150
Sse9I AATT 1 cut(s) 90
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 2 cut(s) 283, 379
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 430
TasI AATT 1 cut(s) 90
Tru1I TTAA 2 cut(s) 122, 450
Tru9I TTAA 2 cut(s) 122, 450
TscAI CASTG 1 cut(s) 72
TseI GCWGC 5 cut(s) 7, 41, 149, 152, 224
TspRI CASTG 1 cut(s) 72
Van91I CCANNNNNTGG 1 cut(s) 386
XceI RCATGY 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.