MD10G1233800.v1.1

Cytochrome c6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013171
Physical Location & Seq
Reverse (-)
32999776 .. 33000631
856 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1233800.v1.1.491

Sequence Viewer

Length: 375 bp
ATGCAGCTTACATCTCTGATATCTACTAGCAGTAACGGTACTTGTTGCTTCCCTAAGGGTGCAGTGAAGCAAGGAGGAGGACACAACCCAATTCCCCAAAAGCAAGAAGAACGGGAGTTTCTCAAGAGCTTGGCTCCCCCTCTAATGGCTGCAGTTCTGACCTTATCTCCACTCTCCATCACTCCTGTCTCACATGCACGAGCCGTAGATGTTCAAAAAGGAGCTGCATTATTTCGTAAAACTTGCATTGGATGCCATGCTGCAGGTGGTAACATAATACAACCAGTAAGCCTCCATTTACCTGTAAACAGATCTCACATGTTTAAGCTCAAAATATTTATTTGTTCTTATCTCGTTGTTTCCTCTTCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Cytochrome_CBB3

Protein Analysis

125

Amino Acids

13.23

Weight (kDa)

9.67

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45040
fragaria_vesca FvH4_3g12220 FvH4_3g12220
malus_domestica MD05G1252700.v1.1 MD10G1233800.v1.1
prunus_persica Prupe.4G111200_v2.0.a1
pyrus_communis pycom05g23080
rosa_chinensis RchiOBHm_Chr5g0020011
rosa_laevigata RLG00000032493
rosa_multiflora Rmu_sc0002250.1_g000004
rosa_roxburghii Rroxscaffold_1G00058180
rosa_rugosa Rorug05G0056300 Rorug05G0056300
rosa_samantha Rh5AG146400 Rh5BG145900 Rh5CG157300 Rh5DG145300
rosa_wichuraiana Rw5G012930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 254
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 145
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 1 cut(s) 215
AluBI AGCT 4 cut(s) 7, 129, 224, 328
AluI AGCT 4 cut(s) 7, 129, 224, 328
Alw26I GTCTC 1 cut(s) 193
ApeKI GCWGC 4 cut(s) 4, 149, 224, 260
AxyI CCTNAGG 1 cut(s) 54
BauI CACGAG 1 cut(s) 198
BbvI GCAGC 4 cut(s) 16, 136, 211, 247
BccI CCATC 1 cut(s) 185
BceAI ACGGC 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 2 cut(s) 27, 373
BfmI CTRYAG 2 cut(s) 150, 261
BfuAI ACCTGC 1 cut(s) 254
BglII AGATCT 1 cut(s) 311
BisI GCNGC 4 cut(s) 5, 150, 225, 261
BlsI GCNGC 4 cut(s) 6, 151, 226, 262
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 242
BplI GAGNNNNNCTC 2 cut(s) 118, 150
BpuEI CTTGAG 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 284
Bse21I CCTNAGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 4 cut(s) 16, 136, 211, 247
BsgI GTGCAG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 193
Bsp143I GATC 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 135
BspMAI CTGCAG 2 cut(s) 154, 265
BspMI ACCTGC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 284
BssMI GATC 1 cut(s) 311
BssSI CACGAG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 370
BstAPI GCANNNNNTGC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 1 cut(s) 314
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 311
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNSI RCATGY 2 cut(s) 197, 322
BstSFI CTRYAG 2 cut(s) 150, 261
BstV1I GCAGC 4 cut(s) 16, 136, 211, 247
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
Bsu36I CCTNAGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 257
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
BveI ACCTGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 39
CviAII CATG 3 cut(s) 194, 257, 319
CviJI RGCY 8 cut(s) 7, 129, 134, 149, 203, 224, 291, 328
CviKI_1 RGCY 8 cut(s) 7, 129, 134, 149, 203, 224, 291, 328
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Eco32I GATATC 1 cut(s) 21
Eco81I CCTNAGG 1 cut(s) 54
EcoRV GATATC 1 cut(s) 21
FaeI CATG 3 cut(s) 197, 260, 322
FaiI YATR 4 cut(s) 195, 258, 275, 320
FatI CATG 3 cut(s) 193, 256, 318
Fnu4HI GCNGC 4 cut(s) 5, 150, 225, 261
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 4 cut(s) 5, 150, 225, 261
FspBI CTAG 2 cut(s) 27, 373
GluI GCNGC 4 cut(s) 5, 150, 225, 261
Hin1II CATG 3 cut(s) 197, 260, 322
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 2 cut(s) 18, 159
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 307
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 7 cut(s) 4, 62, 152, 197, 227, 246, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 3 cut(s) 197, 260, 322
Kzo9I GATC 1 cut(s) 311
LmnI GCTCC 2 cut(s) 139, 221
LpnPI CCDG 4 cut(s) 198, 249, 297, 315
Lsp1109I GCAGC 4 cut(s) 16, 136, 211, 247
LweI GCATC 1 cut(s) 242
MaeI CTAG 2 cut(s) 27, 373
MaeIII GTNAC 2 cut(s) 32, 269
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MboII GAAGA 2 cut(s) 119, 357
MflI RGATCY 1 cut(s) 311
MluCI AATT 1 cut(s) 90
MnlI CCTC 5 cut(s) 68, 71, 150, 302, 373
MseI TTAA 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 252
NdeII GATC 1 cut(s) 311
NlaIII CATG 3 cut(s) 197, 260, 322
NlaIV GGNNCC 1 cut(s) 135
NspI RCATGY 2 cut(s) 197, 322
PaqCI CACCTGC 1 cut(s) 254
PciI ACATGT 1 cut(s) 318
PkrI GCNGC 4 cut(s) 6, 151, 226, 262
PscI ACATGT 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 135
PstI CTGCAG 2 cut(s) 154, 265
PsuI RGATCY 1 cut(s) 311
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 4 cut(s) 5, 150, 225, 261
Sau3AI GATC 1 cut(s) 311
SetI ASST 7 cut(s) 9, 131, 164, 226, 268, 304, 330
SfaNI GCATC 1 cut(s) 242
SfcI CTRYAG 2 cut(s) 150, 261
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 90
SspI AATATT 1 cut(s) 336
SspMI CTAG 2 cut(s) 27, 373
TaaI ACNGT 1 cut(s) 38
TasI AATT 1 cut(s) 90
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 69
TseI GCWGC 4 cut(s) 4, 149, 224, 260
TspRI CASTG 1 cut(s) 69
XceI RCATGY 2 cut(s) 197, 322
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
XspI CTAG 2 cut(s) 27, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.