Prupe.4G111200_v2.0.a1

Cytochrome c6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013171
Physical Location & Seq
Forward (+)
5896273 .. 5899093
2821 bp
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UTR
Exon/CDS
Intron
Prupe.4G111200.1

Sequence Viewer

Length: 522 bp
ATGCAGCTTGCATCTCTGATACCTAATAGCGCTAATGGTACCTGTTGCTTCCCAAAGGGTGCAGTGAAACAAGGAGGACAGAACCCAATTGTTCAAAAGCAAGAACAATGGAAGTTCCTCAAGAGCTTGGCTCCACCTCTAATGGCTGCTGCAGTTCTGGCCTTATCTCCAATCTGCATCACCCCTGTCTCAGATGCACAAACCTTAGATGTTCAAAAAGGAGCTGCATTGTTTCGTAAAACTTGCATTGGATGTCATGATGCAGGCGGAAACATTATACAACCAGGTGCAACACTCTTTACTAGAGATCTACAGAGAAACGGAGTTGACACCGAAGAGGAGATATACCGTGTGACTTACTTTGGCAAGGGAAGAATGCCTGGTTTTGGTGAGAAGTGCACGCCAAGGGGCCAGTGCACATTTGGAGCCCGTTTGCAGGATGAAGAGATAAAGCTTTTGGCTGAGTTTGTCAAGTTACAGGCTGATCAGAACTGGCCAAACATTTTAATTGAAGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Cytochrome_CBB3

Protein Analysis

174

Amino Acids

18.88

Weight (kDa)

8.16

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45040
fragaria_vesca FvH4_3g12220 FvH4_3g12220
malus_domestica MD05G1252700.v1.1 MD10G1233800.v1.1
prunus_persica Prupe.4G111200_v2.0.a1
pyrus_communis pycom05g23080
rosa_chinensis RchiOBHm_Chr5g0020011
rosa_laevigata RLG00000032493
rosa_multiflora Rmu_sc0002250.1_g000004
rosa_roxburghii Rroxscaffold_1G00058180
rosa_rugosa Rorug05G0056300 Rorug05G0056300
rosa_samantha Rh5AG146400 Rh5BG145900 Rh5CG157300 Rh5DG145300
rosa_wichuraiana Rw5G012930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 494
AfaI GTAC 1 cut(s) 40
AfeI AGCGCT 1 cut(s) 31
AfiI CCNNNNNNNGG 2 cut(s) 386, 436
AgsI TTSAA 3 cut(s) 95, 215, 512
AjnI CCWGG 2 cut(s) 283, 379
AluBI AGCT 4 cut(s) 7, 126, 224, 454
AluI AGCT 4 cut(s) 7, 126, 224, 454
Alw21I GWGCWC 2 cut(s) 401, 419
Alw26I GTCTC 1 cut(s) 193
Alw44I GTGCAC 2 cut(s) 397, 415
Aor51HI AGCGCT 1 cut(s) 31
AoxI GGCC 3 cut(s) 159, 409, 494
ApaLI GTGCAC 2 cut(s) 397, 415
ApeKI GCWGC 4 cut(s) 4, 146, 149, 224
Asp718I GGTACC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 2 cut(s) 172, 401
BaeGI GKGCMC 2 cut(s) 401, 419
BalI TGGCCA 1 cut(s) 496
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 430
Bbv12I GWGCWC 2 cut(s) 401, 419
BbvI GCAGC 4 cut(s) 16, 133, 136, 211
BciT130I CCWGG 2 cut(s) 285, 381
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 2 cut(s) 150, 311
BfoI RGCGCY 1 cut(s) 33
BglII AGATCT 1 cut(s) 307
BisI GCNGC 4 cut(s) 5, 147, 150, 225
BlsI GCNGC 4 cut(s) 6, 148, 151, 226
Bme1390I CCNGG 2 cut(s) 285, 381
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 4 cut(s) 40, 132, 410, 427
BmrFI CCNGG 2 cut(s) 285, 381
BmsI GCATC 4 cut(s) 20, 184, 186, 250
BplI GAGNNNNNCTC 2 cut(s) 115, 147
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 404
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 436
Bse1I ACTGG 2 cut(s) 412, 497
BseBI CCWGG 2 cut(s) 285, 381
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 2 cut(s) 257, 445
BseLI CCNNNNNNNGG 2 cut(s) 386, 436
BseMII CTCAG 2 cut(s) 204, 453
BseNI ACTGG 2 cut(s) 412, 497
BseRI GAGGAG 1 cut(s) 353
BseSI GKGCMC 2 cut(s) 401, 419
BseXI GCAGC 4 cut(s) 16, 133, 136, 211
BsgI GTGCAG 1 cut(s) 81
BshFI GGCC 3 cut(s) 161, 411, 496
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 401, 419
BslI CCNNNNNNNGG 2 cut(s) 386, 436
BsmAI GTCTC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 3 cut(s) 161, 411, 496
Bsp1286I GDGCHC 3 cut(s) 401, 419, 430
Bsp143I GATC 2 cut(s) 307, 484
BspACI CCGC 1 cut(s) 267
BspANI GGCC 3 cut(s) 161, 411, 496
BspCNI CTCAG 2 cut(s) 203, 454
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 4 cut(s) 40, 132, 410, 427
BspMAI CTGCAG 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 38
BsrI ACTGG 2 cut(s) 412, 497
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 2 cut(s) 307, 484
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 2 cut(s) 285, 381
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 2 cut(s) 330, 438
BstC8I GCNNGC 3 cut(s) 9, 265, 401
BstDEI CTNAG 3 cut(s) 190, 205, 462
BstF5I GGATG 2 cut(s) 257, 445
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 310, 487
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 307, 484
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 2 cut(s) 285, 381
BstSCI CCNGG 2 cut(s) 283, 379
BstSFI CTRYAG 2 cut(s) 150, 311
BstSLI GKGCMC 2 cut(s) 401, 419
BstV1I GCAGC 4 cut(s) 16, 133, 136, 211
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 3 cut(s) 161, 411, 496
BtsCI GGATG 2 cut(s) 257, 445
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 69, 419
Cac8I GCNNGC 3 cut(s) 9, 265, 401
CciI TCATGA 1 cut(s) 256
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 409
CsiI ACCWGGT 1 cut(s) 283
Csp6I GTAC 1 cut(s) 39
CviAII CATG 1 cut(s) 257
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 3 cut(s) 190, 205, 462
DpnI GATC 2 cut(s) 309, 486
DpnII GATC 2 cut(s) 307, 484
EaeI YGGCCR 1 cut(s) 494
Eam1104I CTCTTC 2 cut(s) 330, 438
EarI CTCTTC 2 cut(s) 330, 438
EciI GGCGGA 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 404
Eco24I GRGCYC 1 cut(s) 430
Eco47III AGCGCT 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 283, 379
EcoT14I CCWWGG 1 cut(s) 404
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 1 cut(s) 260
FaiI YATR 3 cut(s) 258, 278, 346
FatI CATG 1 cut(s) 256
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 4 cut(s) 5, 147, 150, 225
FokI GGATG 2 cut(s) 264, 452
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 4 cut(s) 5, 147, 150, 225
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 31
GluI GCNGC 4 cut(s) 5, 147, 150, 225
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 3 cut(s) 161, 411, 496
HhaI GCGC 1 cut(s) 32
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 452
HphI GGTGA 2 cut(s) 172, 401
Hpy166II GTNNAC 3 cut(s) 328, 399, 417
Hpy188I TCNGA 3 cut(s) 18, 193, 489
Hpy188III TCNNGA 2 cut(s) 121, 257
Hpy8I GTNNAC 3 cut(s) 328, 399, 417
HpyCH4III ACNGT 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 3 cut(s) 190, 205, 462
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 1 cut(s) 30
KpnI GGTACC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 2 cut(s) 307, 484
LmnI GCTCC 3 cut(s) 136, 221, 425
Lsp1109I GCAGC 4 cut(s) 16, 133, 136, 211
LweI GCATC 4 cut(s) 20, 184, 186, 250
MabI ACCWGGT 1 cut(s) 283
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 352, 474
MalI GATC 2 cut(s) 309, 486
MboI GATC 2 cut(s) 307, 484
MboII GAAGA 3 cut(s) 347, 384, 455
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 3 cut(s) 401, 419, 430
MlsI TGGCCA 1 cut(s) 496
MluCI AATT 2 cut(s) 87, 507
MluNI TGGCCA 1 cut(s) 496
MnlI CCTC 4 cut(s) 68, 128, 147, 331
Mox20I TGGCCA 1 cut(s) 496
MscI TGGCCA 1 cut(s) 496
MseI TTAA 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 496
MspR9I CCNGG 2 cut(s) 285, 381
MunI CAATTG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 2 cut(s) 285, 381
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 2 cut(s) 307, 484
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 4 cut(s) 40, 132, 410, 427
NmuCI GTSAC 1 cut(s) 352
PagI TCATGA 1 cut(s) 256
PctI GAATGC 1 cut(s) 381
PkrI GCNGC 4 cut(s) 6, 148, 151, 226
Psp6I CCWGG 2 cut(s) 283, 379
PspGI CCWGG 2 cut(s) 283, 379
PspN4I GGNNCC 4 cut(s) 40, 132, 410, 427
PspPI GGNCC 1 cut(s) 409
PstI CTGCAG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 4 cut(s) 5, 147, 150, 225
Sau3AI GATC 2 cut(s) 307, 484
Sau96I GGNCC 1 cut(s) 409
ScrFI CCNGG 2 cut(s) 285, 381
SduI GDGCHC 3 cut(s) 401, 419, 430
SetI ASST 9 cut(s) 9, 25, 44, 128, 139, 206, 226, 289, 456
SexAI ACCWGGT 1 cut(s) 283
SfaNI GCATC 4 cut(s) 20, 184, 186, 250
SfcI CTRYAG 2 cut(s) 150, 311
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 87, 507
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 283, 379
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 350
TasI AATT 2 cut(s) 87, 507
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TscAI CASTG 2 cut(s) 69, 419
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 4 cut(s) 4, 146, 149, 224
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 456
TspGWI ACGGA 1 cut(s) 336
TspRI CASTG 2 cut(s) 69, 419
VneI GTGCAC 2 cut(s) 397, 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.