RLG00000032493

Cytochrome c6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013171
Physical Location & Seq
Forward (+)
15816325 .. 15818172
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032493

Sequence Viewer

Length: 513 bp
ATGCAGCTTACGTCTTTGATATCAAACACCAATAATGGTGCCTATTTCTTCCCAAAGTGTGCAGTGAAGCAACAACACAACCCAATTCCTCAGAAACAAGAACAATGTAAGCTTTTAAGGAGCTTGGCTCCACCTCTAATGGCTGCAGCTCTGGCCTTATCTCCAATCTGCGTTACTCCTGTCTCACATGCCCAAACCATCGATGTTCAGAGAGGAGCTGCGTTGTTTCGTACTACTTGCATTGGATGTCATGATACAGGTGGAAACATACTACAACCAGGCGCAACACTCTTTACTAAAGATCTACAAAGAAATGGAGTTGACACAGAGGAGGAGATATATCGTGTTACTTACTTTGGCAAGGGAAGAATGCCAGGTTTTGGTCAGAACTGCACACCGAGGGGCCAATGCACATTTGGAGCTCGATTGCAGGATGAGGACATTAAGCTTTTAGCTGAGTTTGTCAAGTTACAGGCTGATCAAGACTGGAGAAATAGTTTTAGTAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Cytochrome_CBB3

Protein Analysis

171

Amino Acids

18.79

Weight (kDa)

8.18

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrome_CBB3 PF13442 69 - 133 7e-10 Cytochrome C oxidase, cbb3-type, subunit III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45040
fragaria_vesca FvH4_3g12220 FvH4_3g12220
malus_domestica MD05G1252700.v1.1 MD10G1233800.v1.1
prunus_persica Prupe.4G111200_v2.0.a1
pyrus_communis pycom05g23080
rosa_chinensis RchiOBHm_Chr5g0020011
rosa_laevigata RLG00000032493
rosa_multiflora Rmu_sc0002250.1_g000004
rosa_roxburghii Rroxscaffold_1G00058180
rosa_rugosa Rorug05G0056300 Rorug05G0056300
rosa_samantha Rh5AG146400 Rh5BG145900 Rh5CG157300 Rh5DG145300
rosa_wichuraiana Rw5G012930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 380
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 380
AjnI CCWGG 2 cut(s) 277, 373
AluBI AGCT 8 cut(s) 7, 112, 123, 149, 218, 422, 448, 455
AluI AGCT 8 cut(s) 7, 112, 123, 149, 218, 422, 448, 455
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 1 cut(s) 187
AoxI GGCC 2 cut(s) 153, 403
ApeKI GCWGC 4 cut(s) 4, 143, 146, 218
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 424
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 4 cut(s) 16, 130, 158, 205
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 2 cut(s) 279, 375
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 144
BglII AGATCT 1 cut(s) 301
BisI GCNGC 4 cut(s) 5, 144, 147, 219
BlsI GCNGC 4 cut(s) 6, 145, 148, 220
Bme1390I CCNGG 2 cut(s) 279, 375
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 3 cut(s) 40, 129, 404
BmrFI CCNGG 2 cut(s) 279, 375
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BpmI CTGGAG 1 cut(s) 508
Bsa29I ATCGAT 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 398
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 491
BseBI CCWGG 2 cut(s) 279, 375
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 2 cut(s) 251, 439
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 2 cut(s) 104, 447
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 3 cut(s) 228, 344, 347
BseXI GCAGC 4 cut(s) 16, 130, 158, 205
BsgI GTGCAG 2 cut(s) 81, 376
BshFI GGCC 2 cut(s) 155, 405
BshNI GGYRCC 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 187
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 2 cut(s) 155, 405
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 2 cut(s) 301, 478
BspANI GGCC 2 cut(s) 155, 405
BspCNI CTCAG 2 cut(s) 103, 448
BspDI ATCGAT 1 cut(s) 201
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 40, 129, 404
BspMAI CTGCAG 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 38
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 2 cut(s) 301, 478
Bst2UI CCWGG 2 cut(s) 279, 375
BstDEI CTNAG 2 cut(s) 90, 456
BstF5I GGATG 2 cut(s) 251, 439
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 2 cut(s) 304, 481
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 2 cut(s) 301, 478
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 2 cut(s) 279, 375
BstNSI RCATGY 1 cut(s) 191
BstSCI CCNGG 2 cut(s) 277, 373
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 16, 130, 158, 205
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
Bsu15I ATCGAT 1 cut(s) 201
BsuRI GGCC 2 cut(s) 155, 405
BsuTUI ATCGAT 1 cut(s) 201
BtsCI GGATG 2 cut(s) 251, 439
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 403
ClaI ATCGAT 1 cut(s) 201
Csp6I GTAC 1 cut(s) 231
CviAII CATG 2 cut(s) 188, 251
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 90, 456
DpnI GATC 2 cut(s) 303, 480
DpnII GATC 2 cut(s) 301, 478
Ecl136II GAGCTC 1 cut(s) 422
Eco24I GRGCYC 1 cut(s) 424
Eco32I GATATC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 277, 373
EcoRV GATATC 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 424
FaeI CATG 2 cut(s) 191, 254
FaiI YATR 4 cut(s) 189, 252, 269, 340
FatI CATG 2 cut(s) 187, 250
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 4 cut(s) 5, 144, 147, 219
FokI GGATG 2 cut(s) 258, 446
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 4 cut(s) 5, 144, 147, 219
GlaI GCGC 1 cut(s) 283
GluI GCNGC 4 cut(s) 5, 144, 147, 219
GsuI CTGGAG 1 cut(s) 508
HaeIII GGCC 2 cut(s) 155, 405
HhaI GCGC 1 cut(s) 284
Hin1II CATG 2 cut(s) 191, 254
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 2 cut(s) 110, 446
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 3 cut(s) 93, 210, 387
Hpy188III TCNNGA 2 cut(s) 251, 482
Hpy8I GTNNAC 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 7 cut(s) 4, 62, 146, 240, 393, 411, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 90, 456
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 2 cut(s) 191, 254
HspAI GCGC 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 2 cut(s) 301, 478
LmnI GCTCC 4 cut(s) 120, 133, 215, 419
Lsp1109I GCAGC 4 cut(s) 16, 130, 158, 205
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 3 cut(s) 172, 346, 468
MalI GATC 2 cut(s) 303, 480
MboI GATC 2 cut(s) 301, 478
MboII GAAGA 2 cut(s) 40, 378
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 1 cut(s) 84
MnlI CCTC 7 cut(s) 99, 144, 206, 322, 325, 393, 430
MseI TTAA 2 cut(s) 116, 444
MspR9I CCNGG 2 cut(s) 279, 375
Mva1269I GAATGC 1 cut(s) 375
MvaI CCWGG 2 cut(s) 279, 375
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 2 cut(s) 301, 478
NlaIII CATG 2 cut(s) 191, 254
NlaIV GGNNCC 3 cut(s) 40, 129, 404
NspI RCATGY 1 cut(s) 191
PagI TCATGA 1 cut(s) 250
PctI GAATGC 1 cut(s) 375
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 4 cut(s) 6, 145, 148, 220
Psp124BI GAGCTC 1 cut(s) 424
Psp6I CCWGG 2 cut(s) 277, 373
PspGI CCWGG 2 cut(s) 277, 373
PspN4I GGNNCC 3 cut(s) 40, 129, 404
PspPI GGNCC 1 cut(s) 403
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SacI GAGCTC 1 cut(s) 424
SaqAI TTAA 2 cut(s) 116, 444
SatI GCNGC 4 cut(s) 5, 144, 147, 219
Sau3AI GATC 2 cut(s) 301, 478
Sau96I GGNCC 1 cut(s) 403
ScrFI CCNGG 2 cut(s) 279, 375
SduI GDGCHC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 144
Sse9I AATT 1 cut(s) 84
SstI GAGCTC 1 cut(s) 424
StyD4I CCNGG 2 cut(s) 277, 373
TaiI ACGT 1 cut(s) 14
TaqI TCGA 2 cut(s) 201, 424
TasI AATT 1 cut(s) 84
Tru1I TTAA 2 cut(s) 116, 444
Tru9I TTAA 2 cut(s) 116, 444
TscAI CASTG 1 cut(s) 69
TseI GCWGC 4 cut(s) 4, 143, 146, 218
TspRI CASTG 1 cut(s) 69
Van91I CCANNNNNTGG 1 cut(s) 380
XceI RCATGY 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.