RchiOBHm_Chr5g0020011

Cytochrome c6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013171
Physical Location & Seq
Forward (+)
14371284 .. 14373274
1991 bp
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UTR
Exon/CDS
Intron
PRQ30013

Sequence Viewer

Length: 375 bp
ATGGCTGCAGCTCTGGCCTTATCTCCAATCTGCGTTACTCCTGTCTCACATGCCCAAACCATTGATGTTCAGAGAGGAGCTGCGTTGTTTCGTACTACTTGCATTGGATGTCATGATGCAGGTGGAAACATAATACAACCAGGTGCAACACTCTTTACTAAAGATCTACAAAGAAATGGAGTTGACACAGAGGAGGAGATATATCGTGTTACTTACTTTGGCAAGGGAAGAATGCCAGGTTTTGGTCAGAACTGCACACCGAGGGGCCAATGCACATTTGGAGCTCGATTGCAGGACGAGGACATTAAGCTTTTAGCTGAGTTTGTCAAGTTACAGGCTGATCAAGACTGGAGAAATAATCTAAGTAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Cytochrome_CBB3

Protein Analysis

124

Amino Acids

13.58

Weight (kDa)

5.64

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrome_CBB3 PF13442 23 - 87 4.1e-10 Cytochrome C oxidase, cbb3-type, subunit III
Cytochrom_C PF00034 23 - 110 3.6e-06 Cytochrome c
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45040
fragaria_vesca FvH4_3g12220 FvH4_3g12220
malus_domestica MD05G1252700.v1.1 MD10G1233800.v1.1
prunus_persica Prupe.4G111200_v2.0.a1
pyrus_communis pycom05g23080
rosa_chinensis RchiOBHm_Chr5g0020011
rosa_laevigata RLG00000032493
rosa_multiflora Rmu_sc0002250.1_g000004
rosa_roxburghii Rroxscaffold_1G00058180
rosa_rugosa Rorug05G0056300 Rorug05G0056300
rosa_samantha Rh5AG146400 Rh5BG145900 Rh5CG157300 Rh5DG145300
rosa_wichuraiana Rw5G012930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 242
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 242
AjnI CCWGG 2 cut(s) 139, 235
AluBI AGCT 5 cut(s) 11, 80, 284, 310, 317
AluI AGCT 5 cut(s) 11, 80, 284, 310, 317
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 49
AoxI GGCC 2 cut(s) 15, 265
ApeKI GCWGC 3 cut(s) 5, 8, 80
AspS9I GGNCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 20, 67
BciT130I CCWGG 2 cut(s) 141, 237
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 110
BglII AGATCT 1 cut(s) 163
BisI GCNGC 3 cut(s) 6, 9, 81
BlsI GCNGC 3 cut(s) 7, 10, 82
Bme1390I CCNGG 2 cut(s) 141, 237
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 2 cut(s) 141, 237
BmsI GCATC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 370
BsaJI CCNNGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 353
BseBI CCWGG 2 cut(s) 141, 237
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 3 cut(s) 90, 206, 209
BseXI GCAGC 2 cut(s) 20, 67
BsgI GTGCAG 1 cut(s) 238
BshFI GGCC 2 cut(s) 17, 267
BsiHKAI GWGCWC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 2 cut(s) 17, 267
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 163, 340
BspANI GGCC 2 cut(s) 17, 267
BspCNI CTCAG 1 cut(s) 310
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 266
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 2 cut(s) 163, 340
Bst2UI CCWGG 2 cut(s) 141, 237
BstDEI CTNAG 2 cut(s) 318, 362
BstF5I GGATG 1 cut(s) 113
BstKTI GATC 2 cut(s) 166, 343
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 2 cut(s) 163, 340
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 2 cut(s) 141, 237
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 2 cut(s) 139, 235
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 20, 67
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 2 cut(s) 17, 267
BtsCI GGATG 1 cut(s) 113
BveI ACCTGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 265
CsiI ACCWGGT 1 cut(s) 139
Csp6I GTAC 1 cut(s) 93
CviAII CATG 2 cut(s) 50, 113
CviJI RGCY 9 cut(s) 5, 11, 17, 80, 267, 284, 310, 317, 338
CviKI_1 RGCY 9 cut(s) 5, 11, 17, 80, 267, 284, 310, 317, 338
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 2 cut(s) 318, 362
DpnI GATC 2 cut(s) 165, 342
DpnII GATC 2 cut(s) 163, 340
Ecl136II GAGCTC 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 139, 235
EcoT38I GRGCYC 1 cut(s) 286
FaeI CATG 2 cut(s) 53, 116
FaiI YATR 4 cut(s) 51, 114, 131, 202
FatI CATG 2 cut(s) 49, 112
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 6, 9, 81
FokI GGATG 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 6, 9, 81
GluI GCNGC 3 cut(s) 6, 9, 81
GsuI CTGGAG 1 cut(s) 370
HaeIII GGCC 2 cut(s) 17, 267
Hin1II CATG 2 cut(s) 53, 116
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 72, 249
Hpy188III TCNNGA 2 cut(s) 113, 344
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4V TGCA 7 cut(s) 8, 102, 119, 146, 255, 273, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 2 cut(s) 318, 362
Hsp92II CATG 2 cut(s) 53, 116
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 2 cut(s) 163, 340
LmnI GCTCC 2 cut(s) 77, 281
LpnPI CCDG 9 cut(s) 54, 105, 126, 153, 222, 249, 278, 320, 334
Lsp1109I GCAGC 2 cut(s) 20, 67
LweI GCATC 1 cut(s) 106
MabI ACCWGGT 1 cut(s) 139
MaeIII GTNAC 3 cut(s) 34, 208, 330
MalI GATC 2 cut(s) 165, 342
MboI GATC 2 cut(s) 163, 340
MboII GAAGA 1 cut(s) 240
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 286
MnlI CCTC 5 cut(s) 68, 184, 187, 255, 292
MseI TTAA 1 cut(s) 306
MspR9I CCNGG 2 cut(s) 141, 237
Mva1269I GAATGC 1 cut(s) 237
MvaI CCWGG 2 cut(s) 141, 237
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 2 cut(s) 163, 340
NlaIII CATG 2 cut(s) 53, 116
NlaIV GGNNCC 1 cut(s) 266
NspI RCATGY 1 cut(s) 53
PagI TCATGA 1 cut(s) 112
PaqCI CACCTGC 1 cut(s) 110
PctI GAATGC 1 cut(s) 237
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 3 cut(s) 7, 10, 82
Psp124BI GAGCTC 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 139, 235
PspGI CCWGG 2 cut(s) 139, 235
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 265
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 3 cut(s) 6, 9, 81
Sau3AI GATC 2 cut(s) 163, 340
Sau96I GGNCC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 141, 237
SduI GDGCHC 1 cut(s) 286
SetI ASST 8 cut(s) 13, 82, 124, 145, 241, 286, 312, 319
SexAI ACCWGGT 1 cut(s) 139
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 286
StyD4I CCNGG 2 cut(s) 139, 235
TaqI TCGA 1 cut(s) 286
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseI GCWGC 3 cut(s) 5, 8, 80
Van91I CCANNNNNTGG 1 cut(s) 242
XceI RCATGY 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.