FvH4_3g12220

Cytochrome c6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013171
Physical Location & Seq
Forward (+)
7231009 .. 7233096
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12220.t1

Sequence Viewer

Length: 513 bp
ATGCAGCTCACGTTTGTGACATCAAACACCAATAATGGTGCCTGTTTCTTCACAGAGTGTGCAGTGAAGCAAGAACAATACCCAGTTCCTCAGAAGCAAGAAAAATGGAAGGTTTTGAAGAGCATGGCTCCACCTCTATTGGCTGCAGCTCTGGCCTTGTCTCCAATCTGCATTACTCCTGTCTCACATGCCCAAACTATCGATGTTCAGAAAGGAGCTGCATTGTTTCGTACTACTTGCATTGGATGTCATGATATGGGTGGAAACATAATACAACCAGGTGCAACACTCTTTACTAAAGATCTACAGAGAAATGGAGTTGACACAGAGGAGGAGATATATCGTGTTACTTACTTTGGCAAGGGAAGAATGCCAGGATTTGGTCAGAACTGCACACCAAGGGGCCAATGCACATTTGGAGCTCGTTTGCAGGATGAGGACATTAAGCTTTTGGCCGAATTTGTCAAGTTACAGGCTGATCAAGATTGGACGAGTAACTTAAGTAACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Cytochrome_CBB3

Protein Analysis

171

Amino Acids

18.77

Weight (kDa)

6.12

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrome_CBB3 PF13442 69 - 133 1.6e-09 Cytochrome C oxidase, cbb3-type, subunit III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45040
fragaria_vesca FvH4_3g12220 FvH4_3g12220
malus_domestica MD05G1252700.v1.1 MD10G1233800.v1.1
prunus_persica Prupe.4G111200_v2.0.a1
pyrus_communis pycom05g23080
rosa_chinensis RchiOBHm_Chr5g0020011
rosa_laevigata RLG00000032493
rosa_multiflora Rmu_sc0002250.1_g000004
rosa_roxburghii Rroxscaffold_1G00058180
rosa_rugosa Rorug05G0056300 Rorug05G0056300
rosa_samantha Rh5AG146400 Rh5BG145900 Rh5CG157300 Rh5DG145300
rosa_wichuraiana Rw5G012930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 380
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 1 cut(s) 458
AdeI CACNNNGTG 1 cut(s) 57
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 380
AflII CTTAAG 1 cut(s) 499
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 2 cut(s) 277, 373
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 5 cut(s) 7, 149, 218, 422, 448
AluI AGCT 5 cut(s) 7, 149, 218, 422, 448
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 2 cut(s) 165, 187
AoxI GGCC 3 cut(s) 153, 403, 453
ApeKI GCWGC 4 cut(s) 4, 143, 146, 218
ApoI RAATTY 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 424
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 4 cut(s) 16, 130, 158, 205
BciT130I CCWGG 2 cut(s) 279, 375
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 165, 187
BfmI CTRYAG 2 cut(s) 144, 305
BfrI CTTAAG 1 cut(s) 499
BglII AGATCT 1 cut(s) 301
BisI GCNGC 4 cut(s) 5, 144, 147, 219
BlsI GCNGC 4 cut(s) 6, 145, 148, 220
Bme1390I CCNGG 2 cut(s) 279, 375
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 3 cut(s) 40, 129, 404
BmrFI CCNGG 2 cut(s) 279, 375
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 112, 144
Bsa29I ATCGAT 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 2 cut(s) 279, 375
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 2 cut(s) 251, 439
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 2 cut(s) 344, 347
BseXI GCAGC 4 cut(s) 16, 130, 158, 205
BsgI GTGCAG 2 cut(s) 81, 376
BshFI GGCC 3 cut(s) 155, 405, 455
BshNI GGYRCC 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 2 cut(s) 165, 187
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 3 cut(s) 155, 405, 455
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 2 cut(s) 301, 478
BspANI GGCC 3 cut(s) 155, 405, 455
BspCNI CTCAG 1 cut(s) 103
BspDI ATCGAT 1 cut(s) 201
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 40, 129, 404
BspMAI CTGCAG 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 38
BspTI CTTAAG 1 cut(s) 499
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 2 cut(s) 301, 478
BssT1I CCWWGG 1 cut(s) 398
Bst2UI CCWGG 2 cut(s) 279, 375
Bst6I CTCTTC 1 cut(s) 113
BstAFI CTTAAG 1 cut(s) 499
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 251, 439
BstKTI GATC 2 cut(s) 304, 481
BstMAI GTCTC 2 cut(s) 165, 187
BstMBI GATC 2 cut(s) 301, 478
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 2 cut(s) 279, 375
BstNSI RCATGY 1 cut(s) 191
BstSCI CCNGG 2 cut(s) 277, 373
BstSFI CTRYAG 2 cut(s) 144, 305
BstV1I GCAGC 4 cut(s) 16, 130, 158, 205
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
Bsu15I ATCGAT 1 cut(s) 201
BsuRI GGCC 3 cut(s) 155, 405, 455
BsuTUI ATCGAT 1 cut(s) 201
BtsCI GGATG 2 cut(s) 251, 439
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
CciI TCATGA 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 403
ClaI ATCGAT 1 cut(s) 201
CsiI ACCWGGT 1 cut(s) 277
Csp6I GTAC 1 cut(s) 231
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 3 cut(s) 124, 188, 251
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 303, 480
DpnII GATC 2 cut(s) 301, 478
DraIII CACNNNGTG 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 422
Eco130I CCWWGG 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 424
Eco53kI GAGCTC 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 277, 373
EcoT14I CCWWGG 1 cut(s) 398
EcoT38I GRGCYC 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 3 cut(s) 127, 191, 254
FaiI YATR 6 cut(s) 125, 189, 252, 257, 269, 340
FatI CATG 3 cut(s) 123, 187, 250
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 4 cut(s) 5, 144, 147, 219
FokI GGATG 2 cut(s) 258, 446
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 4 cut(s) 5, 144, 147, 219
GluI GCNGC 4 cut(s) 5, 144, 147, 219
HaeIII GGCC 3 cut(s) 155, 405, 455
Hin1II CATG 3 cut(s) 127, 191, 254
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 446
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 3 cut(s) 93, 210, 387
Hpy188III TCNNGA 2 cut(s) 251, 482
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 3 cut(s) 127, 191, 254
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 2 cut(s) 301, 478
LguI GCTCTTC 1 cut(s) 113
LmnI GCTCC 3 cut(s) 133, 215, 419
Lsp1109I GCAGC 4 cut(s) 16, 130, 158, 205
MabI ACCWGGT 1 cut(s) 277
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 5 cut(s) 16, 346, 468, 494, 503
MalI GATC 2 cut(s) 303, 480
MboI GATC 2 cut(s) 301, 478
MboII GAAGA 3 cut(s) 40, 130, 378
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 1 cut(s) 458
MnlI CCTC 5 cut(s) 99, 144, 322, 325, 430
MseI TTAA 2 cut(s) 444, 500
MslI CAYNNNNRTG 1 cut(s) 14
MspCI CTTAAG 1 cut(s) 499
MspR9I CCNGG 2 cut(s) 279, 375
Mva1269I GAATGC 1 cut(s) 375
MvaI CCWGG 2 cut(s) 279, 375
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 2 cut(s) 301, 478
NlaIII CATG 3 cut(s) 127, 191, 254
NlaIV GGNNCC 3 cut(s) 40, 129, 404
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 191
OliI CACNNNNGTG 1 cut(s) 14
PagI TCATGA 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 113
PctI GAATGC 1 cut(s) 375
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 4 cut(s) 6, 145, 148, 220
Psp124BI GAGCTC 1 cut(s) 424
Psp6I CCWGG 2 cut(s) 277, 373
PspGI CCWGG 2 cut(s) 277, 373
PspN4I GGNNCC 3 cut(s) 40, 129, 404
PspPI GGNCC 1 cut(s) 403
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 424
SapI GCTCTTC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 444, 500
SatI GCNGC 4 cut(s) 5, 144, 147, 219
Sau3AI GATC 2 cut(s) 301, 478
Sau96I GGNCC 1 cut(s) 403
ScrFI CCNGG 2 cut(s) 279, 375
SduI GDGCHC 1 cut(s) 424
SetI ASST 9 cut(s) 9, 14, 114, 136, 151, 220, 283, 424, 450
SexAI ACCWGGT 1 cut(s) 277
SfcI CTRYAG 2 cut(s) 144, 305
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
Sse9I AATT 1 cut(s) 458
SstI GAGCTC 1 cut(s) 424
StyD4I CCNGG 2 cut(s) 277, 373
StyI CCWWGG 1 cut(s) 398
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 458
Tru1I TTAA 2 cut(s) 444, 500
Tru9I TTAA 2 cut(s) 444, 500
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 4 cut(s) 4, 143, 146, 218
Tsp45I GTSAC 1 cut(s) 16
TspRI CASTG 1 cut(s) 69
Van91I CCANNNNNTGG 1 cut(s) 380
Vha464I CTTAAG 1 cut(s) 499
XapI RAATTY 1 cut(s) 458
XceI RCATGY 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.