AT5G45410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009018
Physical Location & Seq
Reverse (-)
18401908 .. 18403947
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45410.1

Sequence Viewer

Length: 1029 bp
ATGGATCAAGAGTGTCCCTTTGCTGCCGAAAGCATAATCCAGAAATGCCCTTTCCTGAGAAACATCAACAAGCCTACCAATTTGTCCTTCTCCTCCTTGAGTTTTCCAATTCCGGTGCAAGGAGGTAAAGGTCCTATTTTTGAAGATGGTCCTGGATTTGATTCAGCATTCAAGCTCTTCCATGGGAAAGATGGTATTGTGCCGCTTTCTGGTTTCGCTGATGATTCTGAAGATGAGGCGGGTCGTCGTGCTCTGCAATTCAATCCACTTGCTGGTAAGGTAGCTACAATAAGCCTATCAGCTTTTGGTCCTGGAGGCCCTTTTGGTTTTGGTCCTTTCTCAGAGAAATGGAAGAAACAACAGAAGAAACCTAAACCTTCCAAAAACCAACAGTCTGGGGACTCTTCGAAACATGAGGCAGTTGGAGACGAATGGTTAAAAACCGGGAATTGTCCTATCGCCAAGTCTTTTAGAGCTGCAAGCAAAGTCATGCCTCTTATTTCTAAAGCATTAACGCTACCACCTGGTATGAAATATAGATGTCCAGCTCCTATAGTAGCTGCTAGAGCTGCACTTTCGAAGACTGCTTTGGTCAAAAGTCTTCGCCCTCAGCCTTTACCTGAAAAGATGCTTGCAATCGCTCTCATGGGAATGGCTGCAAATGTGCCTCTAGGTGTATGGAGAGAACACACAAAGAAGTTTTCGCCTGCATGGTTTTTGGCTGTCCATGCTGCTGTGCCTTTTATAGCAATGCTTAGGAAATCTGTTCTGATGCCCAAAACAGCCATGGCTTTGACCATTGGAGCTTCGATCTTGGGACAGGTGATTGGGTCAAGAGCTGAGCGTTACCGTCTCAAAGCAGTAGCTGAGAAAATGGTTCCTGTAACCGCTATGGTTTCTGGATACAACCAGAGCCCTGGCGACTCAGGCATTTCTGGGGGACATTGTGGTATAGGGGAGGGAGTGAAGCAGGTTTATTACAATGTAAATATTGGAGAGTCTGCTAAATCAACTGGACTCTGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

36.47

Weight (kDa)

9.7

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 961
AccB7I CCANNNNNTGG 1 cut(s) 272
AciI CCGC 3 cut(s) 203, 239, 888
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 249
AfiI CCNNNNNNNGG 3 cut(s) 119, 209, 272
AgsI TTSAA 3 cut(s) 143, 172, 262
AjnI CCWGG 4 cut(s) 151, 310, 523, 916
AjuI GAANNNNNNNTTGG 4 cut(s) 71, 103, 572, 604
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 2 cut(s) 420, 857
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 866
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 6 cut(s) 23, 476, 560, 569, 656, 731
AspS9I GGNCC 5 cut(s) 131, 149, 308, 317, 332
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 1 cut(s) 835
AsuII TTCGAA 2 cut(s) 407, 578
AvaII GGWCC 4 cut(s) 131, 149, 308, 332
BanII GRGCYC 1 cut(s) 917
BbsI GAAGAC 2 cut(s) 587, 593
Bbv12I GWGCWC 1 cut(s) 253
BbvCI CCTCAGC 1 cut(s) 609
BbvI GCAGC 6 cut(s) 10, 463, 547, 556, 643, 718
BccI CCATC 2 cut(s) 140, 185
BciT130I CCWGG 4 cut(s) 153, 312, 525, 918
BciVI GTATCC 1 cut(s) 896
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 420, 857
BfaI CTAG 2 cut(s) 564, 671
BfmI CTRYAG 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 961
BfuI GTATCC 1 cut(s) 896
BisI GCNGC 7 cut(s) 24, 203, 477, 561, 570, 657, 732
BlpI GCTNAGC 1 cut(s) 840
BlsI GCNGC 7 cut(s) 25, 204, 478, 562, 571, 658, 733
Bme1390I CCNGG 5 cut(s) 153, 312, 445, 525, 918
Bme18I GGWCC 4 cut(s) 131, 149, 308, 332
BmgT120I GGNCC 5 cut(s) 131, 149, 308, 317, 332
BmiI GGNNCC 1 cut(s) 879
BmrFI CCNGG 5 cut(s) 153, 312, 445, 525, 918
BmsI GCATC 2 cut(s) 618, 762
BpiI GAAGAC 2 cut(s) 587, 593
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 2 cut(s) 609, 755
Bpu1102I GCTNAGC 1 cut(s) 840
Bpu14I TTCGAA 2 cut(s) 407, 578
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 445
BsaJI CCNNGG 3 cut(s) 181, 786, 916
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 209, 272
Bse1I ACTGG 1 cut(s) 1018
Bse3DI GCAATG 1 cut(s) 756
BseBI CCWGG 4 cut(s) 153, 312, 525, 918
BseDI CCNNGG 3 cut(s) 181, 786, 916
BseLI CCNNNNNNNGG 3 cut(s) 119, 209, 272
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 6 cut(s) 47, 354, 623, 831, 858, 939
BseNI ACTGG 1 cut(s) 1018
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 6 cut(s) 10, 463, 547, 556, 643, 718
BsgI GTGCAG 1 cut(s) 555
BshFI GGCC 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 2 cut(s) 113, 444
BslFI GGGAC 3 cut(s) 413, 831, 954
BslI CCNNNNNNNGG 3 cut(s) 119, 209, 272
BsmAI GTCTC 2 cut(s) 420, 857
BsmBI CGTCTC 2 cut(s) 420, 857
BsmFI GGGAC 3 cut(s) 413, 831, 954
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 1 cut(s) 318
Bsp119I TTCGAA 2 cut(s) 407, 578
Bsp1286I GDGCHC 2 cut(s) 253, 917
Bsp143I GATC 2 cut(s) 4, 810
Bsp1720I GCTNAGC 1 cut(s) 840
Bsp19I CCATGG 2 cut(s) 181, 786
BspACI CCGC 3 cut(s) 203, 239, 888
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 6 cut(s) 48, 353, 622, 832, 859, 938
BspLI GGNNCC 1 cut(s) 879
BspMI ACCTGC 1 cut(s) 961
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 182
BspT104I TTCGAA 2 cut(s) 407, 578
BsrDI GCAATG 1 cut(s) 756
BsrI ACTGG 1 cut(s) 1018
BssECI CCNNGG 3 cut(s) 181, 786, 916
BssMI GATC 2 cut(s) 4, 810
BssT1I CCWWGG 2 cut(s) 181, 786
Bst2UI CCWGG 4 cut(s) 153, 312, 525, 918
Bst4CI ACNGT 2 cut(s) 393, 851
Bst6I CTCTTC 2 cut(s) 182, 409
BstBI TTCGAA 2 cut(s) 407, 578
BstC8I GCNNGC 3 cut(s) 481, 633, 708
BstDEI CTNAG 7 cut(s) 56, 340, 609, 755, 840, 867, 925
BstDSI CCRYGG 2 cut(s) 181, 786
BstKTI GATC 2 cut(s) 7, 813
BstMAI GTCTC 2 cut(s) 420, 857
BstMBI GATC 2 cut(s) 4, 810
BstMWI GCNNNNNNNGC 4 cut(s) 566, 569, 728, 927
BstNI CCWGG 4 cut(s) 153, 312, 525, 918
BstSCI CCNGG 5 cut(s) 151, 310, 443, 523, 916
BstSFI CTRYAG 1 cut(s) 552
BstV1I GCAGC 6 cut(s) 10, 463, 547, 556, 643, 718
BstV2I GAAGAC 2 cut(s) 587, 593
BstXI CCANNNNNNTGG 2 cut(s) 395, 917
BsuI GTATCC 1 cut(s) 896
BsuRI GGCC 1 cut(s) 318
BtgI CCRYGG 2 cut(s) 181, 786
BveI ACCTGC 1 cut(s) 961
Cac8I GCNNGC 3 cut(s) 481, 633, 708
CaiI CAGNNNCTG 1 cut(s) 866
Cfr13I GGNCC 5 cut(s) 131, 149, 308, 317, 332
CsiI ACCWGGT 1 cut(s) 523
CviAII CATG 7 cut(s) 182, 413, 490, 646, 711, 728, 787
DdeI CTNAG 7 cut(s) 56, 340, 609, 755, 840, 867, 925
DpnI GATC 2 cut(s) 6, 812
DpnII GATC 2 cut(s) 4, 810
Eam1104I CTCTTC 2 cut(s) 182, 409
EarI CTCTTC 2 cut(s) 182, 409
Eco130I CCWWGG 2 cut(s) 181, 786
Eco24I GRGCYC 1 cut(s) 917
Eco47I GGWCC 4 cut(s) 131, 149, 308, 332
Eco57I CTGAAG 1 cut(s) 249
EcoO109I RGGNCCY 2 cut(s) 131, 317
EcoRII CCWGG 4 cut(s) 151, 310, 523, 916
EcoT14I CCWWGG 2 cut(s) 181, 786
EcoT38I GRGCYC 1 cut(s) 917
ErhI CCWWGG 2 cut(s) 181, 786
Esp3I CGTCTC 2 cut(s) 420, 857
FaeI CATG 7 cut(s) 185, 416, 493, 649, 714, 731, 790
FaqI GGGAC 3 cut(s) 413, 831, 954
FatI CATG 7 cut(s) 181, 412, 489, 645, 710, 727, 786
FauI CCCGC 1 cut(s) 232
Fnu4HI GCNGC 7 cut(s) 24, 203, 477, 561, 570, 657, 732
FriOI GRGCYC 1 cut(s) 917
Fsp4HI GCNGC 7 cut(s) 24, 203, 477, 561, 570, 657, 732
FspBI CTAG 2 cut(s) 564, 671
GluI GCNGC 7 cut(s) 24, 203, 477, 561, 570, 657, 732
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 1 cut(s) 318
HapII CCGG 2 cut(s) 113, 444
Hin1II CATG 7 cut(s) 185, 416, 493, 649, 714, 731, 790
HinfI GANTC 6 cut(s) 161, 224, 401, 923, 998, 1017
HpaII CCGG 2 cut(s) 113, 444
HphI GGTGA 1 cut(s) 835
Hpy188I TCNGA 3 cut(s) 229, 343, 771
Hpy188III TCNNGA 5 cut(s) 8, 40, 55, 834, 900
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 2 cut(s) 97, 387
HpyCH4III ACNGT 2 cut(s) 393, 851
HpyCH4V TGCA 7 cut(s) 118, 256, 479, 572, 635, 659, 710
HpyF10VI GCNNNNNNNGC 4 cut(s) 566, 569, 728, 927
HpyF3I CTNAG 7 cut(s) 56, 340, 609, 755, 840, 867, 925
Hsp92II CATG 7 cut(s) 185, 416, 493, 649, 714, 731, 790
Kzo9I GATC 2 cut(s) 4, 810
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 2 cut(s) 553, 803
Lsp1109I GCAGC 6 cut(s) 10, 463, 547, 556, 643, 718
LweI GCATC 2 cut(s) 618, 762
MabI ACCWGGT 1 cut(s) 523
MaeI CTAG 2 cut(s) 564, 671
MaeIII GTNAC 2 cut(s) 845, 883
MalI GATC 2 cut(s) 6, 812
MboI GATC 2 cut(s) 4, 810
MboII GAAGA 8 cut(s) 155, 169, 242, 364, 376, 396, 592, 593
MhlI GDGCHC 2 cut(s) 253, 917
MluCI AATT 4 cut(s) 79, 108, 257, 448
MlyI GAGTC 4 cut(s) 395, 917, 1007, 1011
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 9 cut(s) 103, 116, 229, 308, 409, 504, 618, 678, 952
MseI TTAA 2 cut(s) 437, 512
MslI CAYNNNNRTG 1 cut(s) 650
MspI CCGG 2 cut(s) 113, 444
MspR9I CCNGG 5 cut(s) 153, 312, 445, 525, 918
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 4 cut(s) 153, 312, 525, 918
MwoI GCNNNNNNNGC 4 cut(s) 566, 569, 728, 927
NciI CCSGG 1 cut(s) 445
NcoI CCATGG 2 cut(s) 181, 786
NdeII GATC 2 cut(s) 4, 810
NlaIII CATG 7 cut(s) 185, 416, 493, 649, 714, 731, 790
NlaIV GGNNCC 1 cut(s) 879
NspV TTCGAA 2 cut(s) 407, 578
PciSI GCTCTTC 1 cut(s) 182
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 2 cut(s) 161, 224
PflMI CCANNNNNTGG 1 cut(s) 272
PfoI TCCNGGA 2 cut(s) 151, 310
PkrI GCNGC 7 cut(s) 25, 204, 478, 562, 571, 658, 733
PleI GAGTC 4 cut(s) 395, 917, 1006, 1011
PpsI GAGTC 4 cut(s) 395, 917, 1006, 1011
PpuMI RGGWCCY 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 131
Psp6I CCWGG 4 cut(s) 151, 310, 523, 916
PspGI CCWGG 4 cut(s) 151, 310, 523, 916
PspN4I GGNNCC 1 cut(s) 879
PspPI GGNCC 5 cut(s) 131, 149, 308, 317, 332
PspPPI RGGWCCY 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 866
RseI CAYNNNNRTG 1 cut(s) 650
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 437, 512
SatI GCNGC 7 cut(s) 24, 203, 477, 561, 570, 657, 732
Sau3AI GATC 2 cut(s) 4, 810
Sau96I GGNCC 5 cut(s) 131, 149, 308, 317, 332
SchI GAGTC 4 cut(s) 395, 917, 1007, 1011
ScrFI CCNGG 5 cut(s) 153, 312, 445, 525, 918
SduI GDGCHC 2 cut(s) 253, 917
SexAI ACCWGGT 1 cut(s) 523
SfaNI GCATC 2 cut(s) 618, 762
SfcI CTRYAG 1 cut(s) 552
SfuI TTCGAA 2 cut(s) 407, 578
SinI GGWCC 4 cut(s) 131, 149, 308, 332
SmiMI CAYNNNNRTG 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 4 cut(s) 79, 108, 257, 448
SsiI CCGC 3 cut(s) 203, 239, 888
SspI AATATT 1 cut(s) 991
SspMI CTAG 2 cut(s) 564, 671
StyD4I CCNGG 5 cut(s) 151, 310, 443, 523, 916
StyI CCWWGG 2 cut(s) 181, 786
TaaI ACNGT 2 cut(s) 393, 851
TaqI TCGA 3 cut(s) 407, 578, 809
TasI AATT 4 cut(s) 79, 108, 257, 448
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 2 cut(s) 161, 224
Tru1I TTAA 2 cut(s) 437, 512
Tru9I TTAA 2 cut(s) 437, 512
TseI GCWGC 6 cut(s) 23, 476, 560, 569, 656, 731
TspDTI ATGAA 1 cut(s) 545
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 4 cut(s) 131, 149, 308, 332
XcmI CCANNNNNNNNNTGG 2 cut(s) 188, 784
XspI CTAG 2 cut(s) 564, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.