Rroxscaffold_3G00246050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009018
Physical Location & Seq
Reverse (-)
39134124 .. 39137600
3477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246050.1

Sequence Viewer

Length: 1062 bp
ATGGATTTTCTGTTTAGAGGAATGAATGGAGAGGCTTCTGGTTGCCCCTTTGATGAGAATGACATTCAGAGATGTCCATTCTTGAGGAACCTACACAAACCCACGTGCTTTTCCTTCACTTCCGTAAATATCCCCATTCCTGTCCATGGAGCCAGTGGTCCAATATTTGAAGATGGTCCTAATTTTGATATTGCCTTTAAGCTCTTTCATGGAAAGGATGGTGTTGTCCCACTGTCAGACAGATCTTCTGATAATGACATTCTGGAAGTGAAGCCTGAACCCCAGTTCAATCCTTTAGCTGCCAAAGCTGCCACCATAAGTCTGTCAGCATTTGGACCTGGAGGGCCTTTTAGTTTTGGTTCCTTCTCTGACAAAGGGAAAAAGCAGAACTCCAACTCATCCAGTAAGAAGGAACCCCCTCCACAGAAAGGAAATTCGTCAAAACATGAGGCACTGGGAAATGATTGGTTAAAAACAGGTAACTGCCCAATTGCCAAGTCATATAGAGCTGTGAGCTCTGTTTTACCACTTGTTGCGACAGCACTTCAGCCACCCGCTGGCATGAAGCTCAAATGCCCGCCTGCAGTAGTTGCTGCAAGGGCAGCCCTTGCCCGCACCACCTTTGTTAAAAACCTACGCCCTCAGCCCCTACCTGCAAAAATGCTTGTTATTGCAGCCTTAGGTATGGCAGTCAATATTCCATTAGGCATGTGGAAGGAGCACACTACAAAATTTTCCCTCTCATGGTTTGCAGCAGTGCATGCCGCTGTGCCCTTCATAGCCATGCTTAGGAAATCAGTTCTGATCCCCAAAACAGCCATGGCATTGACAATCGCGGCATCTATCTTAGGACAGGTTATTGGTTCAAGAGCTGAGAGGATCCGGATGAAAGCAGTGACTGAGAGATTCAGGGAGCCAGCACAGACAACAGTTGAAAGTGCTGGCTTTAGCTCAAGCCAGGTTGATGGCATAACAGGCGGTCATTGTGGTGCAGAAGGAATGGTGTTCAATTCTCAAGGTGTGACGGGTGCCAGGTCAACTTCAACTAATGTATGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

37.54

Weight (kDa)

9.57

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 661
AccB1I GGYRCC 1 cut(s) 1028
AccB7I CCANNNNNTGG 1 cut(s) 557
AccII CGCG 1 cut(s) 836
AccIII TCCGGA 1 cut(s) 882
AciI CCGC 6 cut(s) 555, 578, 613, 765, 836, 978
AclWI GGATC 3 cut(s) 799, 874, 887
AcsI RAATTY 2 cut(s) 433, 731
AcuI CTGAAG 1 cut(s) 530
AcvI CACGTG 1 cut(s) 105
AfiI CCNNNNNNNGG 5 cut(s) 146, 428, 557, 744, 789
AgsI TTSAA 6 cut(s) 170, 289, 867, 935, 1009, 1044
AjnI CCWGG 3 cut(s) 337, 957, 1031
AluBI AGCT 8 cut(s) 202, 299, 308, 509, 516, 568, 872, 951
AluI AGCT 8 cut(s) 202, 299, 308, 509, 516, 568, 872, 951
Alw21I GWGCWC 2 cut(s) 518, 723
AlwI GGATC 3 cut(s) 799, 874, 887
AlwNI CAGNNNCTG 1 cut(s) 899
Aor13HI TCCGGA 1 cut(s) 882
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 6 cut(s) 299, 308, 593, 602, 674, 752
ApoI RAATTY 2 cut(s) 433, 731
AspS9I GGNCC 4 cut(s) 158, 176, 335, 344
AvaII GGWCC 3 cut(s) 158, 176, 335
AxyI CCTNAGG 1 cut(s) 679
BaeGI GKGCMC 1 cut(s) 774
BamHI GGATCC 1 cut(s) 879
BanI GGYRCC 1 cut(s) 1028
BanII GRGCYC 1 cut(s) 518
BbrPI CACGTG 1 cut(s) 105
Bbv12I GWGCWC 2 cut(s) 518, 723
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 6 cut(s) 286, 295, 580, 614, 686, 764
BccI CCATC 3 cut(s) 167, 212, 959
BciT130I CCWGG 3 cut(s) 339, 959, 1033
BfmI CTRYAG 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 661
BglII AGATCT 1 cut(s) 242
BisI GCNGC 8 cut(s) 300, 309, 594, 603, 675, 753, 765, 837
BlsI GCNGC 8 cut(s) 301, 310, 595, 604, 676, 754, 766, 838
Bme1390I CCNGG 3 cut(s) 339, 959, 1033
Bme18I GGWCC 3 cut(s) 158, 176, 335
BmgT120I GGNCC 4 cut(s) 158, 176, 335, 344
BmiI GGNNCC 7 cut(s) 89, 151, 361, 414, 881, 915, 1030
BmrFI CCNGG 3 cut(s) 339, 959, 1033
BmrI ACTGGG 2 cut(s) 277, 464
BmsI GCATC 1 cut(s) 848
BmuI ACTGGG 2 cut(s) 277, 464
BpmI CTGGAG 1 cut(s) 360
Bpu10I CCTNAGC 2 cut(s) 642, 788
BpuEI CTTGAG 3 cut(s) 103, 937, 999
BsaAI YACGTR 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 145, 819
BsaWI WCCGGW 1 cut(s) 882
Bsc4I CCNNNNNNNGG 5 cut(s) 146, 428, 557, 744, 789
Bse1I ACTGG 4 cut(s) 153, 283, 402, 459
Bse21I CCTNAGG 1 cut(s) 679
BseAI TCCGGA 1 cut(s) 882
BseBI CCWGG 3 cut(s) 339, 959, 1033
BseDI CCNNGG 2 cut(s) 145, 819
BseGI GGATG 3 cut(s) 223, 398, 891
BseLI CCNNNNNNNGG 5 cut(s) 146, 428, 557, 744, 789
BseMII CTCAG 3 cut(s) 656, 864, 891
BseNI ACTGG 4 cut(s) 153, 283, 402, 459
BseSI GKGCMC 1 cut(s) 774
BseXI GCAGC 6 cut(s) 286, 295, 580, 614, 686, 764
BsgI GTGCAG 1 cut(s) 1011
Bsh1236I CGCG 1 cut(s) 836
BshFI GGCC 1 cut(s) 346
BshNI GGYRCC 1 cut(s) 1028
BsiHKAI GWGCWC 2 cut(s) 518, 723
BsiSI CCGG 1 cut(s) 883
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 5 cut(s) 146, 428, 557, 744, 789
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 346
Bsp1286I GDGCHC 3 cut(s) 518, 723, 774
Bsp13I TCCGGA 1 cut(s) 882
Bsp143I GATC 3 cut(s) 242, 804, 879
Bsp19I CCATGG 2 cut(s) 145, 819
BspACI CCGC 6 cut(s) 555, 578, 613, 765, 836, 978
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 3 cut(s) 655, 865, 892
BspEI TCCGGA 1 cut(s) 882
BspFNI CGCG 1 cut(s) 836
BspLI GGNNCC 7 cut(s) 89, 151, 361, 414, 881, 915, 1030
BspMAI CTGCAG 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 661
BspPI GGATC 3 cut(s) 799, 874, 887
BspT107I GGYRCC 1 cut(s) 1028
BsrI ACTGG 4 cut(s) 153, 283, 402, 459
BssECI CCNNGG 2 cut(s) 145, 819
BssMI GATC 3 cut(s) 242, 804, 879
BssT1I CCWWGG 2 cut(s) 145, 819
Bst2UI CCWGG 3 cut(s) 339, 959, 1033
Bst4CI ACNGT 2 cut(s) 234, 931
BstAPI GCANNNNNTGC 3 cut(s) 590, 608, 761
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 7 cut(s) 559, 578, 582, 613, 762, 918, 943
BstDEI CTNAG 6 cut(s) 642, 679, 788, 847, 873, 900
BstDSI CCRYGG 2 cut(s) 145, 819
BstF5I GGATG 3 cut(s) 223, 398, 891
BstFNI CGCG 1 cut(s) 836
BstKTI GATC 3 cut(s) 245, 807, 882
BstMBI GATC 3 cut(s) 242, 804, 879
BstMWI GCNNNNNNNGC 8 cut(s) 305, 308, 590, 599, 602, 608, 761, 975
BstNI CCWGG 3 cut(s) 339, 959, 1033
BstNSI RCATGY 2 cut(s) 712, 764
BstSCI CCNGG 3 cut(s) 337, 957, 1031
BstSFI CTRYAG 1 cut(s) 582
BstSLI GKGCMC 1 cut(s) 774
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 6 cut(s) 286, 295, 580, 614, 686, 764
BstX2I RGATCY 2 cut(s) 242, 879
BstXI CCANNNNNNTGG 1 cut(s) 965
BstYI RGATCY 2 cut(s) 242, 879
Bsu36I CCTNAGG 1 cut(s) 679
BsuRI GGCC 1 cut(s) 346
BtgI CCRYGG 2 cut(s) 145, 819
BtsCI GGATG 3 cut(s) 223, 398, 891
BtsI GCAGTG 2 cut(s) 762, 900
BtsIMutI CAGTG 5 cut(s) 160, 230, 452, 762, 900
BveI ACCTGC 1 cut(s) 661
Cac8I GCNNGC 7 cut(s) 559, 578, 582, 613, 762, 918, 943
CaiI CAGNNNCTG 1 cut(s) 899
Cfr13I GGNCC 4 cut(s) 158, 176, 335, 344
CviAII CATG 9 cut(s) 146, 209, 446, 562, 709, 744, 761, 784, 820
DdeI CTNAG 6 cut(s) 642, 679, 788, 847, 873, 900
DpnI GATC 3 cut(s) 244, 806, 881
DpnII GATC 3 cut(s) 242, 804, 879
Ecl136II GAGCTC 1 cut(s) 516
Eco130I CCWWGG 2 cut(s) 145, 819
Eco24I GRGCYC 1 cut(s) 518
Eco47I GGWCC 3 cut(s) 158, 176, 335
Eco53kI GAGCTC 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 530
Eco72I CACGTG 1 cut(s) 105
Eco81I CCTNAGG 1 cut(s) 679
EcoICRI GAGCTC 1 cut(s) 516
EcoO109I RGGNCCY 1 cut(s) 344
EcoRII CCWGG 3 cut(s) 337, 957, 1031
EcoT14I CCWWGG 2 cut(s) 145, 819
EcoT38I GRGCYC 1 cut(s) 518
ErhI CCWWGG 2 cut(s) 145, 819
FaeI CATG 9 cut(s) 149, 212, 449, 565, 712, 747, 764, 787, 823
FaqI GGGAC 1 cut(s) 212
FatI CATG 9 cut(s) 145, 208, 445, 561, 708, 743, 760, 783, 819
FauI CCCGC 3 cut(s) 562, 585, 620
Fnu4HI GCNGC 8 cut(s) 300, 309, 594, 603, 675, 753, 765, 837
FokI GGATG 3 cut(s) 230, 385, 898
FriOI GRGCYC 1 cut(s) 518
Fsp4HI GCNGC 8 cut(s) 300, 309, 594, 603, 675, 753, 765, 837
GluI GCNGC 8 cut(s) 300, 309, 594, 603, 675, 753, 765, 837
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 1 cut(s) 346
HapII CCGG 1 cut(s) 883
Hin1II CATG 9 cut(s) 149, 212, 449, 565, 712, 747, 764, 787, 823
HincII GTYRAC 1 cut(s) 1038
HindII GTYRAC 1 cut(s) 1038
HinfI GANTC 1 cut(s) 906
HpaII CCGG 1 cut(s) 883
Hpy166II GTNNAC 1 cut(s) 1038
Hpy188I TCNGA 5 cut(s) 69, 238, 250, 370, 804
Hpy188III TCNNGA 4 cut(s) 82, 263, 867, 883
Hpy8I GTNNAC 1 cut(s) 1038
HpyAV CCTTC 6 cut(s) 124, 373, 403, 709, 784, 989
HpyCH4III ACNGT 2 cut(s) 234, 931
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 7 cut(s) 584, 596, 656, 674, 752, 760, 992
HpyF10VI GCNNNNNNNGC 8 cut(s) 305, 308, 590, 599, 602, 608, 761, 975
HpyF3I CTNAG 6 cut(s) 642, 679, 788, 847, 873, 900
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 9 cut(s) 149, 212, 449, 565, 712, 747, 764, 787, 823
Kpn2I TCCGGA 1 cut(s) 882
Kzo9I GATC 3 cut(s) 242, 804, 879
LmnI GCTCC 3 cut(s) 149, 718, 913
Lsp1109I GCAGC 6 cut(s) 286, 295, 580, 614, 686, 764
LweI GCATC 1 cut(s) 848
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 3 cut(s) 479, 895, 1021
MalI GATC 3 cut(s) 244, 806, 881
MboI GATC 3 cut(s) 242, 804, 879
MboII GAAGA 2 cut(s) 182, 237
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 2 cut(s) 242, 879
MhlI GDGCHC 3 cut(s) 518, 723, 774
MluCI AATT 5 cut(s) 181, 433, 489, 731, 1009
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 9 cut(s) 11, 25, 78, 335, 429, 442, 651, 749, 870
MroI TCCGGA 1 cut(s) 882
MseI TTAA 4 cut(s) 198, 470, 627, 1060
MslI CAYNNNNRTG 2 cut(s) 782, 987
MspA1I CMGCKG 2 cut(s) 557, 767
MspI CCGG 1 cut(s) 883
MspR9I CCNGG 3 cut(s) 339, 959, 1033
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 3 cut(s) 339, 959, 1033
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 8 cut(s) 305, 308, 590, 599, 602, 608, 761, 975
NcoI CCATGG 2 cut(s) 145, 819
NdeII GATC 3 cut(s) 242, 804, 879
NlaIII CATG 9 cut(s) 149, 212, 449, 565, 712, 747, 764, 787, 823
NlaIV GGNNCC 7 cut(s) 89, 151, 361, 414, 881, 915, 1030
NmuCI GTSAC 2 cut(s) 895, 1021
NspI RCATGY 2 cut(s) 712, 764
PaeI GCATGC 1 cut(s) 764
PfeI GAWTC 1 cut(s) 906
PflMI CCANNNNNTGG 1 cut(s) 557
PkrI GCNGC 8 cut(s) 301, 310, 595, 604, 676, 754, 766, 838
PmaCI CACGTG 1 cut(s) 105
PmlI CACGTG 1 cut(s) 105
Ppu21I YACGTR 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 518
Psp6I CCWGG 3 cut(s) 337, 957, 1031
PspCI CACGTG 1 cut(s) 105
PspGI CCWGG 3 cut(s) 337, 957, 1031
PspN4I GGNNCC 7 cut(s) 89, 151, 361, 414, 881, 915, 1030
PspPI GGNCC 4 cut(s) 158, 176, 335, 344
PstI CTGCAG 1 cut(s) 586
PstNI CAGNNNCTG 1 cut(s) 899
PsuI RGATCY 2 cut(s) 242, 879
RseI CAYNNNNRTG 2 cut(s) 782, 987
SacI GAGCTC 1 cut(s) 518
SaqAI TTAA 4 cut(s) 198, 470, 627, 1060
SatI GCNGC 8 cut(s) 300, 309, 594, 603, 675, 753, 765, 837
Sau3AI GATC 3 cut(s) 242, 804, 879
Sau96I GGNCC 4 cut(s) 158, 176, 335, 344
ScrFI CCNGG 3 cut(s) 339, 959, 1033
SduI GDGCHC 3 cut(s) 518, 723, 774
SfaNI GCATC 1 cut(s) 848
SfcI CTRYAG 1 cut(s) 582
SinI GGWCC 3 cut(s) 158, 176, 335
SmiMI CAYNNNNRTG 2 cut(s) 782, 987
SmlI CTYRAG 3 cut(s) 82, 952, 1014
SmoI CTYRAG 3 cut(s) 82, 952, 1014
SphI GCATGC 1 cut(s) 764
Sse9I AATT 5 cut(s) 181, 433, 489, 731, 1009
SsiI CCGC 6 cut(s) 555, 578, 613, 765, 836, 978
SspI AATATT 2 cut(s) 165, 697
SstI GAGCTC 1 cut(s) 518
StyD4I CCNGG 3 cut(s) 337, 957, 1031
StyI CCWWGG 2 cut(s) 145, 819
TaaI ACNGT 2 cut(s) 234, 931
TaiI ACGT 1 cut(s) 107
TasI AATT 5 cut(s) 181, 433, 489, 731, 1009
TauI GCSGC 2 cut(s) 767, 839
TfiI GAWTC 1 cut(s) 906
Tru1I TTAA 4 cut(s) 198, 470, 627, 1060
Tru9I TTAA 4 cut(s) 198, 470, 627, 1060
TscAI CASTG 5 cut(s) 160, 237, 459, 762, 900
TseFI GTSAC 2 cut(s) 895, 1021
TseI GCWGC 6 cut(s) 299, 308, 593, 602, 674, 752
Tsp45I GTSAC 2 cut(s) 895, 1021
TspDTI ATGAA 5 cut(s) 38, 197, 578, 766, 902
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 5 cut(s) 160, 237, 459, 762, 900
Van91I CCANNNNNTGG 1 cut(s) 557
VpaK11BI GGWCC 3 cut(s) 158, 176, 335
XapI RAATTY 2 cut(s) 433, 731
XceI RCATGY 2 cut(s) 712, 764
XcmI CCANNNNNNNNNTGG 3 cut(s) 152, 708, 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.