FvH4_5g23940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009018
Physical Location & Seq
Forward (+)
15230852 .. 15234705
3854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23940.t1

Sequence Viewer

Length: 1071 bp
ATGGATTTCCTGTTTAAAGGGATGAATGGAGAGGCTTCTGGTTGCCCCTTCGATGAGAATGACATTCAGAGATGTCCATTTTTGAGGAACCTCAACAAACCCACATCCTTTTCCTTCACTTCTGTAAATATCCCCATTCCTGTCCATGGAGCCAAAGGTCCAATATTTGAAGATGGTCCTAATTTTGATATAGCCTTTAAACTCTTTCATGGGAAGGATGGTGTTGTCCCACTGTCAGACAGATCTTCGTCTGATAATGACATTCTGGAAGTGAAGCATGAACCCCTGTTCAATCCTTTAGCTGCTAAAGCTGCCACCATAAGTCTGTCAGCATTTGGACCTGGAGGGCCTTTTAGTTTTGGTTCCTTCTCTGACAAGGGGAAAAGGCAGAATTCCAACTCATCCAGTAAGAAGGAACCCCCTTTGCAGAAAGGAAACTCATCAAAACATGAGGCACTAGGAAATGATTGGTTAAAAACAGGTAGCTGCCCAATTGCCAAGTCATATAGAGCTGTGAGCTCTGTGTTACCACTTGTTGCAACAGTACTTCAGCCACCCGCTGGCATGAAGCTCAAATGTCCGTCTGCAGTAGTAGCTGCAAGGGCAGCCCTCGCCCGCACCACCTTTGTTAAGAACCTACGCCCCCAACCCCTACCTGCAAAAATGCTTGTTATTGCAGCCTTGGGTATGGCAGTGAACATTCCATTAGGCATGTGGAAAGAGCACACTACGAAATTTTCCCTCTCATGGTTTGCCGCTGTGCATGCTGCTGTGCCCTTCATAGCCATGCTTAGGAAATCAGTCCTGATCCCTAAAACAGCCATGGCATTGACAATTGCAGCGTCTATCTTAGGACAGGTTGTTGGTTCAAGAGCTGAGCGGATTCGGATGAAAGCAGTGACTGAGAGATTAAGGGAGCCAGTACAGACAACAGTTGAAAGTGCCATTGCTGGCTGTAGCTCAAGCCAGGTTGATGGCAAAATAGGCAGTCATTGTGGTGCTGAAGGAATGACCTTTAATTCTCAAGGTGTCAAGGGTGCCAGGCCAACTTCTACTAATGTCTGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

37.88

Weight (kDa)

9.7

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 664
AccB1I GGYRCC 1 cut(s) 1037
AccB7I CCANNNNNTGG 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 880
AciI CCGC 4 cut(s) 558, 616, 756, 880
AclWI GGATC 1 cut(s) 802
AcsI RAATTY 2 cut(s) 391, 734
AcuI CTGAAG 2 cut(s) 533, 1023
AfaI GTAC 2 cut(s) 546, 924
AfiI CCNNNNNNNGG 4 cut(s) 146, 560, 747, 792
AgsI TTSAA 4 cut(s) 170, 292, 870, 938
AjnI CCWGG 3 cut(s) 340, 966, 1040
AluBI AGCT 9 cut(s) 302, 311, 486, 512, 519, 571, 596, 875, 960
AluI AGCT 9 cut(s) 302, 311, 486, 512, 519, 571, 596, 875, 960
Alw21I GWGCWC 2 cut(s) 521, 726
AlwI GGATC 1 cut(s) 802
AlwNI CAGNNNCTG 1 cut(s) 902
AoxI GGCC 2 cut(s) 347, 1043
ApeKI GCWGC 8 cut(s) 302, 311, 486, 596, 605, 677, 767, 839
ApoI RAATTY 2 cut(s) 391, 734
AspS9I GGNCC 4 cut(s) 158, 176, 338, 347
AvaII GGWCC 3 cut(s) 158, 176, 338
BaeGI GKGCMC 1 cut(s) 777
BanI GGYRCC 1 cut(s) 1037
BanII GRGCYC 1 cut(s) 521
Bbv12I GWGCWC 2 cut(s) 521, 726
BbvI GCAGC 8 cut(s) 289, 298, 473, 583, 617, 689, 754, 851
BccI CCATC 3 cut(s) 167, 212, 968
BciT130I CCWGG 3 cut(s) 342, 968, 1042
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 2 cut(s) 585, 955
BfuAI ACCTGC 1 cut(s) 664
BglII AGATCT 1 cut(s) 242
BisI GCNGC 9 cut(s) 303, 312, 487, 597, 606, 678, 756, 768, 840
BlpI GCTNAGC 1 cut(s) 876
BlsI GCNGC 9 cut(s) 304, 313, 488, 598, 607, 679, 757, 769, 841
BmcAI AGTACT 1 cut(s) 546
Bme1390I CCNGG 3 cut(s) 342, 968, 1042
Bme18I GGWCC 3 cut(s) 158, 176, 338
BmgT120I GGNCC 4 cut(s) 158, 176, 338, 347
BmiI GGNNCC 6 cut(s) 89, 151, 364, 417, 918, 1039
BmrFI CCNGG 3 cut(s) 342, 968, 1042
BpmI CTGGAG 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 791
Bpu1102I GCTNAGC 1 cut(s) 876
BpuEI CTTGAG 2 cut(s) 946, 1008
BsaJI CCNNGG 3 cut(s) 145, 681, 822
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 560, 747, 792
Bse1I ACTGG 2 cut(s) 405, 920
Bse3DI GCAATG 1 cut(s) 945
BseBI CCWGG 3 cut(s) 342, 968, 1042
BseDI CCNNGG 3 cut(s) 145, 681, 822
BseGI GGATG 5 cut(s) 27, 104, 223, 401, 894
BseLI CCNNNNNNNGG 4 cut(s) 146, 560, 747, 792
BseMI GCAATG 1 cut(s) 945
BseMII CTCAG 2 cut(s) 867, 894
BseNI ACTGG 2 cut(s) 405, 920
BseSI GKGCMC 1 cut(s) 777
BseXI GCAGC 8 cut(s) 289, 298, 473, 583, 617, 689, 754, 851
BshFI GGCC 2 cut(s) 349, 1045
BshNI GGYRCC 1 cut(s) 1037
BsiHKAI GWGCWC 2 cut(s) 521, 726
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 4 cut(s) 146, 560, 747, 792
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 2 cut(s) 349, 1045
Bsp1286I GDGCHC 3 cut(s) 521, 726, 777
Bsp143I GATC 2 cut(s) 242, 807
Bsp1720I GCTNAGC 1 cut(s) 876
Bsp19I CCATGG 2 cut(s) 145, 822
BspACI CCGC 4 cut(s) 558, 616, 756, 880
BspANI GGCC 2 cut(s) 349, 1045
BspCNI CTCAG 2 cut(s) 868, 895
BspLI GGNNCC 6 cut(s) 89, 151, 364, 417, 918, 1039
BspMAI CTGCAG 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 664
BspPI GGATC 1 cut(s) 802
BspT107I GGYRCC 1 cut(s) 1037
BsrBI CCGCTC 1 cut(s) 880
BsrDI GCAATG 1 cut(s) 945
BsrI ACTGG 2 cut(s) 405, 920
BssECI CCNNGG 3 cut(s) 145, 681, 822
BssMI GATC 2 cut(s) 242, 807
BssT1I CCWWGG 3 cut(s) 145, 681, 822
Bst2UI CCWGG 3 cut(s) 342, 968, 1042
Bst4CI ACNGT 3 cut(s) 234, 544, 934
BstC8I GCNNGC 4 cut(s) 562, 616, 765, 952
BstDEI CTNAG 4 cut(s) 791, 850, 876, 903
BstDSI CCRYGG 2 cut(s) 145, 822
BstF5I GGATG 5 cut(s) 27, 104, 223, 401, 894
BstKTI GATC 2 cut(s) 245, 810
BstMBI GATC 2 cut(s) 242, 807
BstMWI GCNNNNNNNGC 8 cut(s) 308, 311, 593, 602, 605, 611, 764, 984
BstNI CCWGG 3 cut(s) 342, 968, 1042
BstNSI RCATGY 2 cut(s) 715, 767
BstSCI CCNGG 3 cut(s) 340, 966, 1040
BstSFI CTRYAG 2 cut(s) 585, 955
BstSLI GKGCMC 1 cut(s) 777
BstV1I GCAGC 8 cut(s) 289, 298, 473, 583, 617, 689, 754, 851
BstX2I RGATCY 1 cut(s) 242
BstXI CCANNNNNNTGG 1 cut(s) 974
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 2 cut(s) 349, 1045
BtgI CCRYGG 2 cut(s) 145, 822
BtsCI GGATG 5 cut(s) 27, 104, 223, 401, 894
BtsI GCAGTG 2 cut(s) 699, 903
BtsIMutI CAGTG 3 cut(s) 230, 699, 903
BveI ACCTGC 1 cut(s) 664
Cac8I GCNNGC 4 cut(s) 562, 616, 765, 952
CaiI CAGNNNCTG 1 cut(s) 902
Cfr13I GGNCC 4 cut(s) 158, 176, 338, 347
CseI GACGC 1 cut(s) 831
Csp6I GTAC 2 cut(s) 545, 923
CviQI GTAC 2 cut(s) 545, 923
DdeI CTNAG 4 cut(s) 791, 850, 876, 903
DpnI GATC 2 cut(s) 244, 809
DpnII GATC 2 cut(s) 242, 807
DraI TTTAAA 2 cut(s) 16, 199
Ecl136II GAGCTC 1 cut(s) 519
Eco130I CCWWGG 3 cut(s) 145, 681, 822
Eco24I GRGCYC 1 cut(s) 521
Eco47I GGWCC 3 cut(s) 158, 176, 338
Eco53kI GAGCTC 1 cut(s) 519
Eco57I CTGAAG 2 cut(s) 533, 1023
EcoICRI GAGCTC 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 391
EcoRII CCWGG 3 cut(s) 340, 966, 1040
EcoT14I CCWWGG 3 cut(s) 145, 681, 822
EcoT38I GRGCYC 1 cut(s) 521
ErhI CCWWGG 3 cut(s) 145, 681, 822
FaqI GGGAC 1 cut(s) 212
FauI CCCGC 2 cut(s) 565, 623
Fnu4HI GCNGC 9 cut(s) 303, 312, 487, 597, 606, 678, 756, 768, 840
FokI GGATG 5 cut(s) 34, 91, 230, 388, 901
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 9 cut(s) 303, 312, 487, 597, 606, 678, 756, 768, 840
FspBI CTAG 1 cut(s) 458
GluI GCNGC 9 cut(s) 303, 312, 487, 597, 606, 678, 756, 768, 840
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 2 cut(s) 349, 1045
HgaI GACGC 1 cut(s) 831
HinfI GANTC 1 cut(s) 883
Hpy166II GTNNAC 1 cut(s) 697
Hpy188I TCNGA 5 cut(s) 69, 238, 253, 373, 888
Hpy188III TCNNGA 3 cut(s) 266, 805, 870
Hpy8I GTNNAC 1 cut(s) 697
HpyAV CCTTC 7 cut(s) 58, 124, 208, 376, 406, 787, 998
HpyCH4III ACNGT 3 cut(s) 234, 544, 934
HpyCH4V TGCA 8 cut(s) 427, 539, 587, 599, 659, 677, 763, 839
HpyF10VI GCNNNNNNNGC 8 cut(s) 308, 311, 593, 602, 605, 611, 764, 984
HpyF3I CTNAG 4 cut(s) 791, 850, 876, 903
Kzo9I GATC 2 cut(s) 242, 807
LmnI GCTCC 2 cut(s) 149, 916
Lsp1109I GCAGC 8 cut(s) 289, 298, 473, 583, 617, 689, 754, 851
MaeI CTAG 1 cut(s) 458
MaeIII GTNAC 2 cut(s) 525, 898
MalI GATC 2 cut(s) 244, 809
MbiI CCGCTC 1 cut(s) 880
MboI GATC 2 cut(s) 242, 807
MboII GAAGA 2 cut(s) 182, 237
MfeI CAATTG 2 cut(s) 492, 834
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 3 cut(s) 521, 726, 777
MluCI AATT 6 cut(s) 181, 391, 492, 734, 834, 1018
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 7 cut(s) 25, 78, 101, 338, 445, 620, 752
MseI TTAA 7 cut(s) 15, 198, 473, 630, 911, 1017, 1069
MslI CAYNNNNRTG 2 cut(s) 785, 996
MspA1I CMGCKG 2 cut(s) 560, 758
MspR9I CCNGG 3 cut(s) 342, 968, 1042
MunI CAATTG 2 cut(s) 492, 834
MvaI CCWGG 3 cut(s) 342, 968, 1042
MwoI GCNNNNNNNGC 8 cut(s) 308, 311, 593, 602, 605, 611, 764, 984
NcoI CCATGG 2 cut(s) 145, 822
NdeII GATC 2 cut(s) 242, 807
NlaIV GGNNCC 6 cut(s) 89, 151, 364, 417, 918, 1039
NmuCI GTSAC 1 cut(s) 898
NspI RCATGY 2 cut(s) 715, 767
PaeI GCATGC 1 cut(s) 767
PfeI GAWTC 1 cut(s) 883
PflMI CCANNNNNTGG 1 cut(s) 560
PkrI GCNGC 9 cut(s) 304, 313, 488, 598, 607, 679, 757, 769, 841
Psp124BI GAGCTC 1 cut(s) 521
Psp6I CCWGG 3 cut(s) 340, 966, 1040
PspGI CCWGG 3 cut(s) 340, 966, 1040
PspN4I GGNNCC 6 cut(s) 89, 151, 364, 417, 918, 1039
PspPI GGNCC 4 cut(s) 158, 176, 338, 347
PstI CTGCAG 1 cut(s) 589
PstNI CAGNNNCTG 1 cut(s) 902
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 2 cut(s) 546, 924
RsaNI GTAC 2 cut(s) 545, 923
RseI CAYNNNNRTG 2 cut(s) 785, 996
SacI GAGCTC 1 cut(s) 521
SaqAI TTAA 7 cut(s) 15, 198, 473, 630, 911, 1017, 1069
SatI GCNGC 9 cut(s) 303, 312, 487, 597, 606, 678, 756, 768, 840
Sau3AI GATC 2 cut(s) 242, 807
Sau96I GGNCC 4 cut(s) 158, 176, 338, 347
ScaI AGTACT 1 cut(s) 546
ScrFI CCNGG 3 cut(s) 342, 968, 1042
SduI GDGCHC 3 cut(s) 521, 726, 777
SfcI CTRYAG 2 cut(s) 585, 955
SinI GGWCC 3 cut(s) 158, 176, 338
SmiMI CAYNNNNRTG 2 cut(s) 785, 996
SmlI CTYRAG 2 cut(s) 961, 1023
SmoI CTYRAG 2 cut(s) 961, 1023
SphI GCATGC 1 cut(s) 767
Sse9I AATT 6 cut(s) 181, 391, 492, 734, 834, 1018
SsiI CCGC 4 cut(s) 558, 616, 756, 880
SspI AATATT 1 cut(s) 165
SspMI CTAG 1 cut(s) 458
SstI GAGCTC 1 cut(s) 521
StyD4I CCNGG 3 cut(s) 340, 966, 1040
StyI CCWWGG 3 cut(s) 145, 681, 822
TaaI ACNGT 3 cut(s) 234, 544, 934
TaqI TCGA 1 cut(s) 51
TasI AATT 6 cut(s) 181, 391, 492, 734, 834, 1018
TatI WGTACW 2 cut(s) 544, 922
TauI GCSGC 1 cut(s) 758
TfiI GAWTC 1 cut(s) 883
Tru1I TTAA 7 cut(s) 15, 198, 473, 630, 911, 1017, 1069
Tru9I TTAA 7 cut(s) 15, 198, 473, 630, 911, 1017, 1069
TscAI CASTG 3 cut(s) 237, 699, 903
TseFI GTSAC 1 cut(s) 898
TseI GCWGC 8 cut(s) 302, 311, 486, 596, 605, 677, 767, 839
Tsp45I GTSAC 1 cut(s) 898
TspDTI ATGAA 6 cut(s) 38, 197, 294, 581, 769, 905
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 3 cut(s) 237, 699, 903
Van91I CCANNNNNTGG 1 cut(s) 560
VpaK11BI GGWCC 3 cut(s) 158, 176, 338
XapI RAATTY 2 cut(s) 391, 734
XceI RCATGY 2 cut(s) 715, 767
XcmI CCANNNNNNNNNTGG 1 cut(s) 711
XspI CTAG 1 cut(s) 458
ZrmI AGTACT 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.