Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009018

Physical Location & Seq

Genomic Coordinates Forward (+)

28575939 .. 28587772

Gene Structure 11834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG273500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTTTTGGATTATGAAAAACTATTACAGGAGCCTTAGAATATCCAGTAGACCCATGATGTCATTTGAAAAACTTTTGCTTTGCTCAGTAAGTTGTAAATGTGCTGCTTGTATCATGTTCCTTGCTTGTGGTTTAGAAAAAAGATTATCAGATTCTCAGAGAAAATCTGACTTGGCTTTTCTATTTCCATTTTTCCAGAAAGGAAAATCGTCAAAACATGAGGCAGTGGGAAATGATTGGTTAAAAACAGGTAACTGCCCAATTGCCAAGTCATATAGAGCTGTGAGCTCTGTTTTACCACTTGTTGCGACAGCACTTCAGCCACCCGCTGGCATGAAGCTCAAATGTCCGCCTGCAGTAGTTGCTGCAAGGGCAGCCCTTGCTCGCACCACCTTTGTTAAAAACCTACGGCCTCAGCCCCTACCTGCAAAAATGCTTGTCATTGCAGCCTTAGGTATGGCAGTCAACATTCCATTAGGCATGTGGAAGGAGCACACTACAAAATTTTCCCTCTCATGGTTTGCAGCAGTGCATGCTGCTGTGCCCTTCATAGCCATGCTTAGGAAATCAGTTCTGATCCCCAAAACAGCCATGGCATTGACAATCGCGGCATCTATCTTAGGACAGGTTATTGGTTCAAGAGCTGAGAGGATCCGGATGAAAGCAGTGACTGAGAGATTCAGGGAGCCAGCACAGACAACAGTTGAAAGTGCTGGCTTTAGCTCAAGCCAGGTTGATGGCATAACAGGCGGTCGTTGTGGTGCCGAAGGAATGGTGTTCAATTCTCAAGGTGTGACGGGTGCCAGACCAACTTCAACTAATGTATGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

30.03

Weight (kDa)

10.18

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45410 AT5G45410 AT5G45410 AT5G45410 AT5G45410
fragaria_vesca	FvH4_5g23940 FvH4_5g23940
prunus_persica	Prupe.5G021000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0213371
rosa_laevigata	RLG00000002811
rosa_multiflora	Rmu_co8273487.1_g000001 Rmu_ssc0000262.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246050
rosa_rugosa	Rorug07G0141600.1 Rorug07G0141700.1 Rorug07G0141800 Rorug07G0141900
rosa_samantha	Rh7AG273500 Rh7BG268800 Rh7CG292600 Rh7DG280900
rosa_wichuraiana	Rw7G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	433
AccB1I	GGYRCC	2 cut(s)	761, 800
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	49
AccII	CGCG	1 cut(s)	608
AccIII	TCCGGA	1 cut(s)	654
AciI	CCGC	4 cut(s)	327, 350, 608, 750
AclWI	GGATC	3 cut(s)	571, 646, 659
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	329, 516, 561
AgsI	TTSAA	5 cut(s)	68, 639, 707, 781, 816
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	5 cut(s)	281, 288, 340, 644, 723
AluI	AGCT	5 cut(s)	281, 288, 340, 644, 723
Alw21I	GWGCWC	2 cut(s)	290, 495
AlwI	GGATC	3 cut(s)	571, 646, 659
AlwNI	CAGNNNCTG	1 cut(s)	671
Aor13HI	TCCGGA	1 cut(s)	654
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	6 cut(s)	104, 365, 374, 446, 524, 536
ApoI	RAATTY	1 cut(s)	503
AxyI	CCTNAGG	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	546
BamHI	GGATCC	1 cut(s)	651
BanI	GGYRCC	2 cut(s)	761, 800
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	2 cut(s)	290, 495
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	6 cut(s)	91, 352, 386, 458, 523, 536
BccI	CCATC	1 cut(s)	731
BceAI	ACGGC	1 cut(s)	425
BciT130I	CCWGG	1 cut(s)	731
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	7 cut(s)	105, 366, 375, 447, 525, 537, 609
BlsI	GCNGC	7 cut(s)	106, 367, 376, 448, 526, 538, 610
Bme1390I	CCNGG	1 cut(s)	731
BmiI	GGNNCC	5 cut(s)	32, 653, 687, 763, 802
BmrFI	CCNGG	1 cut(s)	731
BmsI	GCATC	1 cut(s)	620
Bpu10I	CCTNAGC	2 cut(s)	414, 560
BpuEI	CTTGAG	2 cut(s)	709, 771
BsaJI	CCNNGG	1 cut(s)	591
BsaWI	WCCGGW	1 cut(s)	654
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 516, 561
Bse1I	ACTGG	1 cut(s)	45
Bse21I	CCTNAGG	1 cut(s)	451
Bse3DI	GCAATG	1 cut(s)	441
BseAI	TCCGGA	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	1 cut(s)	663
BseLI	CCNNNNNNNGG	3 cut(s)	329, 516, 561
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	5 cut(s)	99, 170, 428, 636, 663
BseNI	ACTGG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	546
BseXI	GCAGC	6 cut(s)	91, 352, 386, 458, 523, 536
Bsh1236I	CGCG	1 cut(s)	608
Bsh1285I	CGRYCG	1 cut(s)	754
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	2 cut(s)	761, 800
BsiEI	CGRYCG	1 cut(s)	754
BsiHKAI	GWGCWC	2 cut(s)	290, 495
BsiSI	CCGG	1 cut(s)	655
BslI	CCNNNNNNNGG	3 cut(s)	329, 516, 561
BsnI	GGCC	1 cut(s)	412
Bsp1286I	GDGCHC	3 cut(s)	290, 495, 546
Bsp13I	TCCGGA	1 cut(s)	654
Bsp143I	GATC	2 cut(s)	576, 651
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	4 cut(s)	327, 350, 608, 750
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	5 cut(s)	98, 169, 427, 637, 664
BspEI	TCCGGA	1 cut(s)	654
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	5 cut(s)	32, 653, 687, 763, 802
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	3 cut(s)	571, 646, 659
BspT107I	GGYRCC	2 cut(s)	761, 800
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	2 cut(s)	576, 651
BssT1I	CCWWGG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	1 cut(s)	703
BstAPI	GCANNNNNTGC	3 cut(s)	362, 380, 533
BstC8I	GCNNGC	6 cut(s)	331, 354, 385, 534, 690, 715
BstDEI	CTNAG	9 cut(s)	35, 85, 156, 414, 451, 560, 619, 645, 672
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	1 cut(s)	663
BstFNI	CGCG	1 cut(s)	608
BstKTI	GATC	2 cut(s)	579, 654
BstMBI	GATC	2 cut(s)	576, 651
BstMCI	CGRYCG	1 cut(s)	754
BstMWI	GCNNNNNNNGC	6 cut(s)	362, 371, 374, 380, 533, 747
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	2 cut(s)	484, 536
BstSCI	CCNGG	1 cut(s)	729
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	546
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	6 cut(s)	91, 352, 386, 458, 523, 536
BstX2I	RGATCY	1 cut(s)	651
BstXI	CCANNNNNNTGG	1 cut(s)	737
BstYI	RGATCY	1 cut(s)	651
Bsu36I	CCTNAGG	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	1 cut(s)	663
BtsI	GCAGTG	3 cut(s)	231, 534, 672
BtsIMutI	CAGTG	3 cut(s)	231, 534, 672
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	6 cut(s)	331, 354, 385, 534, 690, 715
CaiI	CAGNNNCTG	1 cut(s)	671
CviAII	CATG	9 cut(s)	55, 115, 218, 334, 481, 516, 533, 556, 592
DdeI	CTNAG	9 cut(s)	35, 85, 156, 414, 451, 560, 619, 645, 672
DpnI	GATC	2 cut(s)	578, 653
DpnII	GATC	2 cut(s)	576, 651
EciI	GGCGGA	1 cut(s)	339
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	302
Eco81I	CCTNAGG	1 cut(s)	451
EcoICRI	GAGCTC	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	729
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	9 cut(s)	58, 118, 221, 337, 484, 519, 536, 559, 595
FatI	CATG	9 cut(s)	54, 114, 217, 333, 480, 515, 532, 555, 591
FauI	CCCGC	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	7 cut(s)	105, 366, 375, 447, 525, 537, 609
FokI	GGATG	1 cut(s)	670
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	7 cut(s)	105, 366, 375, 447, 525, 537, 609
GluI	GCNGC	7 cut(s)	105, 366, 375, 447, 525, 537, 609
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	1 cut(s)	655
Hin1II	CATG	9 cut(s)	58, 118, 221, 337, 484, 519, 536, 559, 595
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	2 cut(s)	152, 678
HpaII	CCGG	1 cut(s)	655
Hpy166II	GTNNAC	2 cut(s)	50, 466
Hpy188I	TCNGA	4 cut(s)	151, 159, 169, 576
Hpy188III	TCNNGA	3 cut(s)	196, 639, 655
Hpy8I	GTNNAC	2 cut(s)	50, 466
HpyAV	CCTTC	3 cut(s)	481, 556, 761
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4V	TGCA	6 cut(s)	356, 368, 428, 446, 524, 532
HpyF10VI	GCNNNNNNNGC	6 cut(s)	362, 371, 374, 380, 533, 747
HpyF3I	CTNAG	9 cut(s)	35, 85, 156, 414, 451, 560, 619, 645, 672
Hsp92II	CATG	9 cut(s)	58, 118, 221, 337, 484, 519, 536, 559, 595
Kpn2I	TCCGGA	1 cut(s)	654
Kzo9I	GATC	2 cut(s)	576, 651
LmnI	GCTCC	3 cut(s)	30, 490, 685
Lsp1109I	GCAGC	6 cut(s)	91, 352, 386, 458, 523, 536
LweI	GCATC	1 cut(s)	620
MaeIII	GTNAC	3 cut(s)	251, 667, 793
MalI	GATC	2 cut(s)	578, 653
MboI	GATC	2 cut(s)	576, 651
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	3 cut(s)	290, 495, 546
MluCI	AATT	3 cut(s)	261, 503, 781
MnlI	CCTC	4 cut(s)	214, 423, 521, 642
MroI	TCCGGA	1 cut(s)	654
MseI	TTAA	3 cut(s)	242, 399, 832
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	655
MspR9I	CCNGG	1 cut(s)	731
MunI	CAATTG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	731
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	6 cut(s)	362, 371, 374, 380, 533, 747
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	2 cut(s)	576, 651
NlaIII	CATG	9 cut(s)	58, 118, 221, 337, 484, 519, 536, 559, 595
NlaIV	GGNNCC	5 cut(s)	32, 653, 687, 763, 802
NmuCI	GTSAC	2 cut(s)	667, 793
NspI	RCATGY	2 cut(s)	484, 536
PaeI	GCATGC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	152, 678
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	7 cut(s)	106, 367, 376, 448, 526, 538, 610
Psp124BI	GAGCTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	5 cut(s)	32, 653, 687, 763, 802
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	651
RseI	CAYNNNNRTG	1 cut(s)	554
SacI	GAGCTC	1 cut(s)	290
SaqAI	TTAA	3 cut(s)	242, 399, 832
SatI	GCNGC	7 cut(s)	105, 366, 375, 447, 525, 537, 609
Sau3AI	GATC	2 cut(s)	576, 651
ScrFI	CCNGG	1 cut(s)	731
SduI	GDGCHC	3 cut(s)	290, 495, 546
SfaNI	GCATC	1 cut(s)	620
SfcI	CTRYAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	2 cut(s)	724, 786
SmoI	CTYRAG	2 cut(s)	724, 786
SphI	GCATGC	1 cut(s)	536
Sse9I	AATT	3 cut(s)	261, 503, 781
SsiI	CCGC	4 cut(s)	327, 350, 608, 750
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	1 cut(s)	703
TasI	AATT	3 cut(s)	261, 503, 781
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	2 cut(s)	152, 678
Tru1I	TTAA	3 cut(s)	242, 399, 832
Tru9I	TTAA	3 cut(s)	242, 399, 832
TscAI	CASTG	3 cut(s)	231, 534, 672
TseFI	GTSAC	2 cut(s)	667, 793
TseI	GCWGC	6 cut(s)	104, 365, 374, 446, 524, 536
Tsp45I	GTSAC	2 cut(s)	667, 793
TspDTI	ATGAA	4 cut(s)	29, 350, 538, 674
TspRI	CASTG	3 cut(s)	231, 534, 672
Van91I	CCANNNNNTGG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	2 cut(s)	484, 536
XcmI	CCANNNNNNNNNTGG	2 cut(s)	480, 589
XmiI	GTMKAC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.