Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009018

Physical Location & Seq

Genomic Coordinates Reverse (-)

2268311 .. 2270199

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G021000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGATTTTCTGTTTAAAGGAATGAATGGAGATGCTTCTGAGTGCCCCTCTGCTGAGGACATGCAAAGATGTCCGTTTTTGAGGAACATAAACAAACCCACTTGTTTTTCCTTCACTCCTATAAGTCTCCCCATTCCTGTGCATGGAGCAAAAGGTCCAATATTTGAGGATGCTCCGAATTTTGATATGGCTTTTAAGCTGTTTCACGGGAAGGATGGTGTTGTCCCACTATCAGGGAGATCTTATTCTCATTTGGACATTCTGGAACCCAAGCCCGAACCTCAGTTCAATCCTTTAGCAGCCAAGGCTGCCACCATAAGTCTGTCAGCATTTGGACCAGGAGGGCCTTTCAGTTTTGGTTCTTTCTCTGACAAATGGAAAAAGAATAACTCCGATTCATCTAGCAAGAAGGAAACCCCTACACAGAATGGAGATTCGTCAAAGCATGAGGCGCTGGGAAATGAGTGGTTAAAAACAGGTAACTGCCCAATTGCCAAGTCATATAGAGCTATGAGCCATGTTCTACCACTTGTTGCGACAGCACTTCAGCCACCCCTTAGCATGAAACTCAGATGTCCGCCTGCAGTAGTTGCTGCAAGGGCAGCCCTCGCACGGACCGCCCTTGTTAAGAACCTACGGCCTCAGCCACTACCTGCAAAAATGCTTGTCATTGCAGCCTTAGGCATGGCAGTTAATATTCCATTAGGTGTATGGAGGGAGCACACACTGAAATTTTCGCTCTCGTGGTTTGTAGCAGTGCATGCTGCTGTTCCCTTCATAGCCATGCTCAGGAAATCAGTCGTGATGCCTAAAACTGCTATGGCATTGACAATTTCAGCTTCTATCCTAGGACAGGTTATCGGTTCTCGAGCTGAGCGAGTCCGGCTGAAAGCAGTAGCTGAGAAAGAGAGAGTAGCAGCACAGACAACAATTGAAAGCACCGTTGCTGGCTATAACCCAAGCCAGGTTGATGGCAGAACAGGTGGTCACTGTGCTGCAGAAGGAATGATATTTTACCCACGAAAGAGTACTGGGCCAACTTCATCATCAAATGTGTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

38.02

Weight (kDa)

9.62

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45410 AT5G45410 AT5G45410 AT5G45410 AT5G45410
fragaria_vesca	FvH4_5g23940 FvH4_5g23940
prunus_persica	Prupe.5G021000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0213371
rosa_laevigata	RLG00000002811
rosa_multiflora	Rmu_co8273487.1_g000001 Rmu_ssc0000262.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246050
rosa_rugosa	Rorug07G0141600.1 Rorug07G0141700.1 Rorug07G0141800 Rorug07G0141900
rosa_samantha	Rh7AG273500 Rh7BG268800 Rh7CG292600 Rh7DG280900
rosa_wichuraiana	Rw7G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	661
AciI	CCGC	2 cut(s)	578, 618
AcsI	RAATTY	2 cut(s)	178, 731
AcuI	CTGAAG	1 cut(s)	530
AfaI	GTAC	1 cut(s)	1030
AfiI	CCNNNNNNNGG	6 cut(s)	143, 233, 612, 789, 853, 964
AgsI	TTSAA	2 cut(s)	289, 935
AjnI	CCWGG	2 cut(s)	337, 963
AluBI	AGCT	5 cut(s)	199, 509, 839, 872, 899
AluI	AGCT	5 cut(s)	199, 509, 839, 872, 899
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	899
Ama87I	CYCGRG	1 cut(s)	867
AoxI	GGCC	3 cut(s)	344, 638, 1034
ApeKI	GCWGC	8 cut(s)	299, 308, 593, 602, 674, 764, 917, 995
ApoI	RAATTY	2 cut(s)	178, 731
AspA2I	CCTAGG	1 cut(s)	847
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	5 cut(s)	155, 335, 344, 615, 1034
AvaI	CYCGRG	1 cut(s)	867
AvaII	GGWCC	3 cut(s)	155, 335, 615
AvrII	CCTAGG	1 cut(s)	847
AxyI	CCTNAGG	1 cut(s)	679
BaeGI	GKGCMC	1 cut(s)	47
BauI	CACGAG	1 cut(s)	742
Bbv12I	GWGCWC	1 cut(s)	723
BbvCI	CCTCAGC	2 cut(s)	54, 642
BbvI	GCAGC	8 cut(s)	295, 311, 580, 614, 686, 751, 929, 982
BccI	CCATC	2 cut(s)	209, 965
BceAI	ACGGC	1 cut(s)	653
BciT130I	CCWGG	2 cut(s)	339, 965
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	402, 848
BfmI	CTRYAG	2 cut(s)	582, 996
BfoI	RGCGCY	1 cut(s)	455
BfuAI	ACCTGC	1 cut(s)	661
BglII	AGATCT	1 cut(s)	239
BisI	GCNGC	8 cut(s)	300, 309, 594, 603, 675, 765, 918, 996
BlnI	CCTAGG	1 cut(s)	847
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	8 cut(s)	301, 310, 595, 604, 676, 766, 919, 997
BmcAI	AGTACT	1 cut(s)	1030
Bme1390I	CCNGG	2 cut(s)	339, 965
Bme18I	GGWCC	3 cut(s)	155, 335, 615
BmeT110I	CYCGRG	1 cut(s)	867
BmgT120I	GGNCC	5 cut(s)	155, 335, 344, 615, 1034
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	339, 965
BmrI	ACTGGG	1 cut(s)	1041
BmsI	GCATC	3 cut(s)	22, 160, 795
BmuI	ACTGGG	1 cut(s)	1041
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
Bpu10I	CCTNAGC	4 cut(s)	54, 557, 642, 788
Bpu1102I	GCTNAGC	1 cut(s)	873
BsaJI	CCNNGG	2 cut(s)	303, 847
Bsc4I	CCNNNNNNNGG	6 cut(s)	143, 233, 612, 789, 853, 964
Bse1I	ACTGG	1 cut(s)	1036
Bse21I	CCTNAGG	1 cut(s)	679
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	339, 965
BseDI	CCNNGG	2 cut(s)	303, 847
BseGI	GGATG	2 cut(s)	175, 220
BseLI	CCNNNNNNNGG	6 cut(s)	143, 233, 612, 789, 853, 964
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	8 cut(s)	30, 45, 296, 583, 656, 802, 864, 891
BseNI	ACTGG	1 cut(s)	1036
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	8 cut(s)	295, 311, 580, 614, 686, 751, 929, 982
BseYI	CCCAGC	1 cut(s)	454
BshFI	GGCC	3 cut(s)	346, 640, 1036
BsiHKAI	GWGCWC	1 cut(s)	723
BsiHKCI	CYCGRG	1 cut(s)	867
BsiSI	CCGG	1 cut(s)	883
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	6 cut(s)	143, 233, 612, 789, 853, 964
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	3 cut(s)	346, 640, 1036
BsoBI	CYCGRG	1 cut(s)	867
Bsp1286I	GDGCHC	2 cut(s)	47, 723
Bsp143I	GATC	1 cut(s)	239
Bsp1720I	GCTNAGC	1 cut(s)	873
BspACI	CCGC	2 cut(s)	578, 618
BspANI	GGCC	3 cut(s)	346, 640, 1036
BspCNI	CTCAG	8 cut(s)	31, 46, 295, 582, 655, 801, 865, 892
BspLI	GGNNCC	1 cut(s)	267
BspMAI	CTGCAG	2 cut(s)	586, 1000
BspMI	ACCTGC	1 cut(s)	661
BsrDI	GCAATG	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	1036
BssECI	CCNNGG	2 cut(s)	303, 847
BssMI	GATC	1 cut(s)	239
BssSI	CACGAG	1 cut(s)	742
BssT1I	CCWWGG	2 cut(s)	303, 847
Bst2BI	CACGAG	1 cut(s)	742
Bst2UI	CCWGG	2 cut(s)	339, 965
Bst4CI	ACNGT	2 cut(s)	943, 992
BstAPI	GCANNNNNTGC	2 cut(s)	590, 761
BstC8I	GCNNGC	3 cut(s)	582, 762, 949
BstENI	CCTNNNNNAGG	1 cut(s)	851
BstF5I	GGATG	2 cut(s)	175, 220
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	1 cut(s)	242
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	239
BstNI	CCWGG	2 cut(s)	339, 965
BstNSI	RCATGY	2 cut(s)	64, 764
BstSCI	CCNGG	2 cut(s)	337, 963
BstSFI	CTRYAG	2 cut(s)	582, 996
BstSLI	GKGCMC	1 cut(s)	47
BstV1I	GCAGC	8 cut(s)	295, 311, 580, 614, 686, 751, 929, 982
BstX2I	RGATCY	1 cut(s)	239
BstXI	CCANNNNNNTGG	1 cut(s)	971
BstYI	RGATCY	1 cut(s)	239
Bsu36I	CCTNAGG	1 cut(s)	679
BsuRI	GGCC	3 cut(s)	346, 640, 1036
BtsCI	GGATG	2 cut(s)	175, 220
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	3 cut(s)	725, 762, 988
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	3 cut(s)	582, 762, 949
CaiI	CAGNNNCTG	1 cut(s)	899
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	5 cut(s)	155, 335, 344, 615, 1034
CpoI	CGGWCCG	1 cut(s)	615
Csp6I	GTAC	1 cut(s)	1029
CspI	CGGWCCG	1 cut(s)	615
CviAII	CATG	8 cut(s)	61, 143, 446, 518, 562, 685, 761, 784
CviQI	GTAC	1 cut(s)	1029
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
DraI	TTTAAA	1 cut(s)	16
EciI	GGCGGA	1 cut(s)	567
Eco130I	CCWWGG	2 cut(s)	303, 847
Eco47I	GGWCC	3 cut(s)	155, 335, 615
Eco57I	CTGAAG	1 cut(s)	530
Eco81I	CCTNAGG	1 cut(s)	679
Eco88I	CYCGRG	1 cut(s)	867
EcoNI	CCTNNNNNAGG	1 cut(s)	851
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	337, 963
EcoT14I	CCWWGG	2 cut(s)	303, 847
ErhI	CCWWGG	2 cut(s)	303, 847
FaeI	CATG	8 cut(s)	64, 146, 449, 521, 565, 688, 764, 787
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	8 cut(s)	60, 142, 445, 517, 561, 684, 760, 783
Fnu4HI	GCNGC	8 cut(s)	300, 309, 594, 603, 675, 765, 918, 996
FokI	GGATG	2 cut(s)	182, 227
Fsp4HI	GCNGC	8 cut(s)	300, 309, 594, 603, 675, 765, 918, 996
FspBI	CTAG	2 cut(s)	402, 848
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	8 cut(s)	300, 309, 594, 603, 675, 765, 918, 996
GsaI	CCCAGC	1 cut(s)	458
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	3 cut(s)	346, 640, 1036
HapII	CCGG	1 cut(s)	883
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	8 cut(s)	64, 146, 449, 521, 565, 688, 764, 787
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	3 cut(s)	395, 434, 879
HpaII	CCGG	1 cut(s)	883
Hpy188I	TCNGA	5 cut(s)	40, 177, 370, 394, 572
Hpy188III	TCNNGA	4 cut(s)	263, 790, 802, 867
HpyAV	CCTTC	5 cut(s)	121, 205, 403, 784, 995
HpyCH4III	ACNGT	2 cut(s)	943, 992
HpyCH4V	TGCA	8 cut(s)	64, 142, 584, 596, 656, 674, 760, 998
Hsp92II	CATG	8 cut(s)	64, 146, 449, 521, 565, 688, 764, 787
HspAI	GCGC	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	239
LmnI	GCTCC	3 cut(s)	146, 178, 718
Lsp1109I	GCAGC	8 cut(s)	295, 311, 580, 614, 686, 751, 929, 982
LweI	GCATC	3 cut(s)	22, 160, 795
MaeI	CTAG	2 cut(s)	402, 848
MaeIII	GTNAC	2 cut(s)	479, 986
MalI	GATC	1 cut(s)	241
MboI	GATC	1 cut(s)	239
MfeI	CAATTG	2 cut(s)	489, 930
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	47, 723
MluCI	AATT	5 cut(s)	178, 489, 731, 831, 930
MlyI	GAGTC	1 cut(s)	888
MseI	TTAA	5 cut(s)	15, 195, 470, 627, 693
MslI	CAYNNNNRTG	2 cut(s)	137, 782
MspI	CCGG	1 cut(s)	883
MspR9I	CCNGG	2 cut(s)	339, 965
MunI	CAATTG	2 cut(s)	489, 930
MvaI	CCWGG	2 cut(s)	339, 965
NdeII	GATC	1 cut(s)	239
NlaIII	CATG	8 cut(s)	64, 146, 449, 521, 565, 688, 764, 787
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	986
NspI	RCATGY	2 cut(s)	64, 764
PaeI	GCATGC	1 cut(s)	764
PaeR7I	CTCGAG	1 cut(s)	867
PcsI	WCGNNNNNNNCGW	1 cut(s)	874
PfeI	GAWTC	2 cut(s)	395, 434
PkrI	GCNGC	8 cut(s)	301, 310, 595, 604, 676, 766, 919, 997
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
Psp6I	CCWGG	2 cut(s)	337, 963
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	2 cut(s)	337, 963
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	5 cut(s)	155, 335, 344, 615, 1034
PstI	CTGCAG	2 cut(s)	586, 1000
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	239
RsaI	GTAC	1 cut(s)	1030
RsaNI	GTAC	1 cut(s)	1029
RseI	CAYNNNNRTG	2 cut(s)	137, 782
Rsr2I	CGGWCCG	1 cut(s)	615
RsrII	CGGWCCG	1 cut(s)	615
SaqAI	TTAA	5 cut(s)	15, 195, 470, 627, 693
SatI	GCNGC	8 cut(s)	300, 309, 594, 603, 675, 765, 918, 996
Sau3AI	GATC	1 cut(s)	239
Sau96I	GGNCC	5 cut(s)	155, 335, 344, 615, 1034
ScaI	AGTACT	1 cut(s)	1030
SchI	GAGTC	1 cut(s)	888
ScrFI	CCNGG	2 cut(s)	339, 965
SduI	GDGCHC	2 cut(s)	47, 723
SfaNI	GCATC	3 cut(s)	22, 160, 795
SfcI	CTRYAG	2 cut(s)	582, 996
Sfr274I	CTCGAG	1 cut(s)	867
SinI	GGWCC	3 cut(s)	155, 335, 615
SlaI	CTCGAG	1 cut(s)	867
SmiMI	CAYNNNNRTG	2 cut(s)	137, 782
SmlI	CTYRAG	1 cut(s)	867
SmoI	CTYRAG	1 cut(s)	867
SphI	GCATGC	1 cut(s)	764
Sse9I	AATT	5 cut(s)	178, 489, 731, 831, 930
SsiI	CCGC	2 cut(s)	578, 618
SspI	AATATT	2 cut(s)	162, 697
SspMI	CTAG	2 cut(s)	402, 848
StyD4I	CCNGG	2 cut(s)	337, 963
StyI	CCWWGG	2 cut(s)	303, 847
TaaI	ACNGT	2 cut(s)	943, 992
TaqI	TCGA	1 cut(s)	868
TasI	AATT	5 cut(s)	178, 489, 731, 831, 930
TatI	WGTACW	1 cut(s)	1028
TfiI	GAWTC	2 cut(s)	395, 434
Tru1I	TTAA	5 cut(s)	15, 195, 470, 627, 693
Tru9I	TTAA	5 cut(s)	15, 195, 470, 627, 693
TscAI	CASTG	3 cut(s)	732, 762, 995
TseFI	GTSAC	1 cut(s)	986
TseI	GCWGC	8 cut(s)	299, 308, 593, 602, 674, 764, 917, 995
Tsp45I	GTSAC	1 cut(s)	986
TspDTI	ATGAA	5 cut(s)	38, 387, 578, 766, 1032
TspGWI	ACGGA	2 cut(s)	63, 628
TspRI	CASTG	3 cut(s)	732, 762, 995
VpaK11BI	GGWCC	3 cut(s)	155, 335, 615
XagI	CCTNNNNNAGG	1 cut(s)	851
XapI	RAATTY	2 cut(s)	178, 731
XceI	RCATGY	2 cut(s)	64, 764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	708
XhoI	CTCGAG	1 cut(s)	867
XmaJI	CCTAGG	1 cut(s)	847
XspI	CTAG	2 cut(s)	402, 848
ZrmI	AGTACT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.