Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009018

Physical Location & Seq

Genomic Coordinates Forward (+)

11184486 .. 11187910

Gene Structure 3425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0141800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCTTTCATGGAAATAAGCTGGGAGTGGAACCTTGACAATTATACTGTTTATGCCAATCTAGATTGGCATAAGGAGTTTATGGATGCAGGGGAAGCCAAGAAAAAGAAGCAAATGATGGGTGCTGATGGTGAGTCTGATGTTCCGAATTGGCTACCACCACCACCGGTGCCCCAAGGATGGGCCAAACTGAATTTTGATGGAGCTTGCAATAAAGATAAAGGGTGTGTAGGTCTGGGAGCGATCTACCATACTTGGCAGAAGCCCAAAATTGGCTTTGCTCAAGCCCAACAGCCCAATTTTGTTGCCAACCCACTTTGGCGCTATGGTGCTGCCAAGTTACTGCCTTACTGGAACTTTGGCGCGAAGATCGATTCCAGTCTCAAATTTAGGGTTTCGCTGAGATTAAAAACCCAGAATCATTTCAAAGCTTTCATCTTTTCTGCAAATTTCAAAGGGGCTTTTGCTTGCCTAGGGATGGCTTCACCACCAAGTCCAAAACGCAGGCGTAAGGATGACGATACAAATGAAACGGCAGCAACATCGCCGGAGAAATCATCCCCTGTGGTGGTCTTTGCTCACGGCGCCGGTGCTCCCTCTTCTTCTGATTGGATGATCAGATGGAAGGGTATGTTGGGCAAAGCACTAAATGCTGTAGAAGTTGTTACCTTTGATTACCCATACATGTCTGGTGGGAAAAAGAGAGCCCCTCCGAAGGCTGAAAAGTTGGTCGATTTTCACGCTGATTTTGTGAAGAAAACTGTTGAAAAGTACCCAGGTCATCCATTGATTTTGGCTGGAAAATCTATGGGTTCAAGGTTACAATTATCTGACTTTTCTGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

31.4

Weight (kDa)

9.49

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_11	PF20408	188 - 274	5.6e-19	Alpha/beta hydrolase domain
Abhydrolase_6	PF12697	190 - 272	8.5e-06	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45410 AT5G45410 AT5G45410 AT5G45410 AT5G45410
fragaria_vesca	FvH4_5g23940 FvH4_5g23940
prunus_persica	Prupe.5G021000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0213371
rosa_laevigata	RLG00000002811
rosa_multiflora	Rmu_co8273487.1_g000001 Rmu_ssc0000262.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246050
rosa_rugosa	Rorug07G0141600.1 Rorug07G0141700.1 Rorug07G0141800 Rorug07G0141900
rosa_samantha	Rh7AG273500 Rh7BG268800 Rh7CG292600 Rh7DG280900
rosa_wichuraiana	Rw7G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	169, 584
AccII	CGCG	1 cut(s)	365
AcsI	RAATTY	3 cut(s)	193, 386, 448
AcyI	GRCGYC	1 cut(s)	585
AfaI	GTAC	1 cut(s)	773
AfiI	CCNNNNNNNGG	6 cut(s)	180, 181, 272, 478, 568, 715
AflIII	ACRYGT	1 cut(s)	684
AgeI	ACCGGT	1 cut(s)	166
AgsI	TTSAA	4 cut(s)	427, 454, 767, 816
AjnI	CCWGG	1 cut(s)	775
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	3 cut(s)	21, 206, 431
AluI	AGCT	3 cut(s)	21, 206, 431
Alw21I	GWGCWC	1 cut(s)	595
Alw26I	GTCTC	1 cut(s)	386
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	2 cut(s)	332, 536
ApoI	RAATTY	3 cut(s)	193, 386, 448
AsiGI	ACCGGT	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	422
AspA2I	CCTAGG	1 cut(s)	472
AspLEI	GCGC	3 cut(s)	324, 365, 587
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	143, 477
AvrII	CCTAGG	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	174
BanI	GGYRCC	2 cut(s)	169, 584
BanII	GRGCYC	1 cut(s)	709
Bbv12I	GWGCWC	1 cut(s)	595
BbvI	GCAGC	2 cut(s)	319, 548
BccI	CCATC	6 cut(s)	112, 122, 174, 194, 472, 615
BceAI	ACGGC	2 cut(s)	549, 598
BcgI	CGANNNNNNTGC	2 cut(s)	525, 559
BciT130I	CCWGG	1 cut(s)	777
BclI	TGATCA	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	2 cut(s)	62, 473
BfmI	CTRYAG	1 cut(s)	654
BfoI	RGCGCY	2 cut(s)	325, 588
BisI	GCNGC	2 cut(s)	333, 537
BlnI	CCTAGG	1 cut(s)	472
BlsI	GCNGC	2 cut(s)	334, 538
Bme1390I	CCNGG	1 cut(s)	777
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	3 cut(s)	32, 171, 586
BmrFI	CCNGG	1 cut(s)	777
BmsI	GCATC	1 cut(s)	76
BplI	GAGNNNNNCTC	2 cut(s)	694, 726
BpuEI	CTTGAG	1 cut(s)	267
Bsa29I	ATCGAT	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	585
BsaJI	CCNNGG	3 cut(s)	175, 472, 775
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	6 cut(s)	180, 181, 272, 478, 568, 715
Bse118I	RCCGGY	2 cut(s)	166, 587
Bse1I	ACTGG	2 cut(s)	356, 378
BseBI	CCWGG	1 cut(s)	777
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	3 cut(s)	175, 472, 775
BseGI	GGATG	7 cut(s)	91, 185, 483, 520, 557, 618, 781
BseLI	CCNNNNNNNGG	6 cut(s)	180, 181, 272, 478, 568, 715
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	356, 378
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	319, 548
BseYI	CCCAGC	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	2 cut(s)	169, 584
BshTI	ACCGGT	1 cut(s)	166
BshVI	ATCGAT	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	595
BsiSI	CCGG	3 cut(s)	167, 548, 588
BslI	CCNNNNNNNGG	6 cut(s)	180, 181, 272, 478, 568, 715
BsmAI	GTCTC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	174, 595, 709
Bsp143I	GATC	3 cut(s)	243, 369, 615
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	393
BspDI	ATCGAT	1 cut(s)	372
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	3 cut(s)	32, 171, 586
BspT107I	GGYRCC	2 cut(s)	169, 584
BsrFI	RCCGGY	2 cut(s)	166, 587
BsrI	ACTGG	2 cut(s)	356, 378
BssAI	RCCGGY	2 cut(s)	166, 587
BssECI	CCNNGG	3 cut(s)	175, 472, 775
BssMI	GATC	3 cut(s)	243, 369, 615
BssNI	GRCGYC	1 cut(s)	585
BssT1I	CCWWGG	2 cut(s)	175, 472
Bst2UI	CCWGG	1 cut(s)	777
Bst4CI	ACNGT	2 cut(s)	49, 763
Bst6I	CTCTTC	1 cut(s)	604
BstACI	GRCGYC	1 cut(s)	585
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstC8I	GCNNGC	3 cut(s)	208, 469, 506
BstDEI	CTNAG	1 cut(s)	401
BstF5I	GGATG	7 cut(s)	91, 185, 483, 520, 557, 618, 781
BstFNI	CGCG	1 cut(s)	365
BstH2I	RGCGCY	2 cut(s)	325, 588
BstHHI	GCGC	3 cut(s)	324, 365, 587
BstKTI	GATC	3 cut(s)	246, 372, 618
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	3 cut(s)	243, 369, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 584, 650
BstNI	CCWGG	1 cut(s)	777
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	1 cut(s)	775
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	1 cut(s)	174
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	319, 548
Bsu15I	ATCGAT	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	185
BsuTUI	ATCGAT	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	7 cut(s)	91, 185, 483, 520, 557, 618, 781
Cac8I	GCNNGC	3 cut(s)	208, 469, 506
CfoI	GCGC	3 cut(s)	324, 365, 587
Cfr10I	RCCGGY	2 cut(s)	166, 587
Cfr13I	GGNCC	1 cut(s)	183
ClaI	ATCGAT	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	772
CspAI	ACCGGT	1 cut(s)	166
CviAII	CATG	3 cut(s)	10, 685, 846
CviQI	GTAC	1 cut(s)	772
DdeI	CTNAG	1 cut(s)	401
DinI	GGCGCC	1 cut(s)	586
DpnI	GATC	3 cut(s)	245, 371, 617
DpnII	GATC	3 cut(s)	243, 369, 615
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
Eco130I	CCWWGG	2 cut(s)	175, 472
Eco24I	GRGCYC	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	775
EcoT14I	CCWWGG	2 cut(s)	175, 472
EcoT38I	GRGCYC	1 cut(s)	709
EgeI	GGCGCC	1 cut(s)	586
EheI	GGCGCC	1 cut(s)	586
ErhI	CCWWGG	2 cut(s)	175, 472
FaeI	CATG	3 cut(s)	13, 688, 849
FatI	CATG	3 cut(s)	9, 684, 845
FbaI	TGATCA	1 cut(s)	615
Fnu4HI	GCNGC	2 cut(s)	333, 537
FokI	GGATG	7 cut(s)	98, 192, 490, 527, 544, 625, 768
FriOI	GRGCYC	1 cut(s)	709
Fsp4HI	GCNGC	2 cut(s)	333, 537
FspBI	CTAG	2 cut(s)	62, 473
GlaI	GCGC	3 cut(s)	323, 364, 586
GluI	GCNGC	2 cut(s)	333, 537
GsaI	CCCAGC	1 cut(s)	25
HaeII	RGCGCY	2 cut(s)	325, 588
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	3 cut(s)	167, 548, 588
HhaI	GCGC	3 cut(s)	324, 365, 587
Hin1I	GRCGYC	1 cut(s)	585
Hin1II	CATG	3 cut(s)	13, 688, 849
Hin6I	GCGC	3 cut(s)	322, 363, 585
HinP1I	GCGC	3 cut(s)	322, 363, 585
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	3 cut(s)	134, 374, 418
HpaII	CCGG	3 cut(s)	167, 548, 588
HphI	GGTGA	2 cut(s)	143, 477
Hpy188I	TCNGA	6 cut(s)	139, 147, 607, 620, 714, 832
Hpy188III	TCNNGA	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	619, 709
HpyCH4III	ACNGT	2 cut(s)	49, 763
HpyCH4V	TGCA	3 cut(s)	89, 210, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 584, 650
HpyF3I	CTNAG	1 cut(s)	401
Hsp92I	GRCGYC	1 cut(s)	585
Hsp92II	CATG	3 cut(s)	13, 688, 849
HspAI	GCGC	3 cut(s)	322, 363, 585
KasI	GGCGCC	1 cut(s)	584
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	3 cut(s)	243, 369, 615
LmnI	GCTCC	3 cut(s)	203, 239, 598
Lsp1109I	GCAGC	2 cut(s)	319, 548
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	62, 473
MaeIII	GTNAC	3 cut(s)	339, 664, 819
MalI	GATC	3 cut(s)	245, 371, 617
MboI	GATC	3 cut(s)	243, 369, 615
MboII	GAAGA	4 cut(s)	379, 591, 594, 766
MhlI	GDGCHC	3 cut(s)	174, 595, 709
MluCI	AATT	8 cut(s)	40, 148, 193, 270, 298, 386, 448, 824
Mly113I	GGCGCC	1 cut(s)	585
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	2 cut(s)	607, 720
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	1 cut(s)	407
MspI	CCGG	3 cut(s)	167, 548, 588
MspR9I	CCNGG	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	777
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	3 cut(s)	95, 584, 650
NarI	GGCGCC	1 cut(s)	585
NdeII	GATC	3 cut(s)	243, 369, 615
NlaIII	CATG	3 cut(s)	13, 688, 849
NlaIV	GGNNCC	3 cut(s)	32, 171, 586
NspI	RCATGY	1 cut(s)	688
PciI	ACATGT	1 cut(s)	684
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	2 cut(s)	374, 418
PinAI	ACCGGT	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	334, 538
PleI	GAGTC	1 cut(s)	142
PluTI	GGCGCC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	142
PscI	ACATGT	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	775
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	775
PspN4I	GGNNCC	3 cut(s)	32, 171, 586
PspPI	GGNCC	1 cut(s)	183
RsaI	GTAC	1 cut(s)	773
RsaNI	GTAC	1 cut(s)	772
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	2 cut(s)	333, 537
Sau3AI	GATC	3 cut(s)	243, 369, 615
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	777
SduI	GDGCHC	3 cut(s)	174, 595, 709
SetI	ASST	8 cut(s)	23, 36, 208, 235, 433, 671, 781, 821
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	654
SfoI	GGCGCC	1 cut(s)	586
SgrAI	CRCCGGYG	2 cut(s)	166, 587
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	8 cut(s)	40, 148, 193, 270, 298, 386, 448, 824
SspDI	GGCGCC	1 cut(s)	584
SspMI	CTAG	2 cut(s)	62, 473
StyD4I	CCNGG	1 cut(s)	775
StyI	CCWWGG	2 cut(s)	175, 472
TaaI	ACNGT	2 cut(s)	49, 763
TaqI	TCGA	2 cut(s)	372, 732
TasI	AATT	8 cut(s)	40, 148, 193, 270, 298, 386, 448, 824
TfiI	GAWTC	2 cut(s)	374, 418
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TseI	GCWGC	2 cut(s)	332, 536
TspDTI	ATGAA	2 cut(s)	424, 543
XapI	RAATTY	3 cut(s)	193, 386, 448
XbaI	TCTAGA	1 cut(s)	61
XceI	RCATGY	1 cut(s)	688
XmaJI	CCTAGG	1 cut(s)	472
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	2 cut(s)	62, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.