Rorug07G0141900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0009018
Physical Location & Seq
Forward (+)
11190425 .. 11191088
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0141900.1

Sequence Viewer

Length: 450 bp
ATGGAGCAAAGCAAGGGTAGGAGATTGATACTCTTCCCAGTACCTCTTCAAGGCCATATAATCCCGATGCTGGAGCTAGCCAACCTTCTACACTTCAAAGGCTTCTCCATAACCATGGTCCCCACCCACTTCAACAAACTCAACCCTTCAAGCTATCCGCACTTAACCTTTCAGTTGATTGATGAAGGCTTGTCGGAGAGTGAGGTCTCTACAAAGGACATTGCCCATCTTATGTCTCTTCTAGAGCAGAAATGTGCTGAACCATTCAAGGAATGCTTGATTAGTTTGCTATCTGATGTTTCAAAAGAGCCCGTTGCTTGTTTGATCACCGAATTTCGCTTTTACTTCACTCAATCTCTTGCTGAGAGTTTCAAGCTACCAAGGCTTCTGCTAAGGACTGGGAGTGTTTCTTCCTTGGCTGTTTCAATCCAGAACAATTTTTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.87

Weight (kDa)

6.96

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AcsI RAATTY 1 cut(s) 332
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 2 cut(s) 50, 70
AgsI TTSAA 9 cut(s) 50, 97, 133, 150, 268, 303, 373, 426, 445
AluBI AGCT 3 cut(s) 76, 153, 376
AluI AGCT 3 cut(s) 76, 153, 376
Alw26I GTCTC 2 cut(s) 211, 240
AoxI GGCC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 319
AsuNHI GCTAGC 1 cut(s) 76
AvaII GGWCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 312
BccI CCATC 1 cut(s) 234
BclI TGATCA 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 211, 240
BfaI CTAG 2 cut(s) 77, 242
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 120
BmrI ACTGGG 2 cut(s) 32, 408
BmsI GCATC 1 cut(s) 57
BmtI GCTAGC 1 cut(s) 80
BmuI ACTGGG 2 cut(s) 32, 408
BpmI CTGGAG 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 392
BsaI GGTCTC 1 cut(s) 211
BsaJI CCNNGG 3 cut(s) 114, 380, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 70
Bse1I ACTGG 2 cut(s) 38, 403
Bse3DI GCAATG 1 cut(s) 219
BseDI CCNNGG 3 cut(s) 114, 380, 414
BseLI CCNNNNNNNGG 2 cut(s) 50, 70
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 38, 403
BshFI GGCC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 50, 70
BsmAI GTCTC 2 cut(s) 211, 240
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 1 cut(s) 158
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 120
BspOI GCTAGC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 2 cut(s) 38, 403
BssECI CCNNGG 3 cut(s) 114, 380, 414
BssMI GATC 1 cut(s) 324
BssT1I CCWWGG 3 cut(s) 114, 380, 414
Bst6I CTCTTC 3 cut(s) 38, 51, 243
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 363, 392
BstDSI CCRYGG 1 cut(s) 114
BstENI CCTNNNNNAGG 1 cut(s) 48
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 2 cut(s) 211, 240
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstXI CCANNNNNNTGG 1 cut(s) 115
BsuRI GGCC 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 41
CviAII CATG 1 cut(s) 115
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 2 cut(s) 363, 392
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eam1104I CTCTTC 3 cut(s) 38, 51, 243
EarI CTCTTC 3 cut(s) 38, 51, 243
Eco130I CCWWGG 3 cut(s) 114, 380, 414
Eco24I GRGCYC 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoT14I CCWWGG 3 cut(s) 114, 380, 414
EcoT38I GRGCYC 1 cut(s) 312
ErhI CCWWGG 3 cut(s) 114, 380, 414
FaeI CATG 1 cut(s) 118
FaiI YATR 5 cut(s) 57, 59, 110, 116, 233
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 114
FbaI TGATCA 1 cut(s) 324
FriOI GRGCYC 1 cut(s) 312
FspBI CTAG 2 cut(s) 77, 242
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 54
Hin1II CATG 1 cut(s) 118
HphI GGTGA 1 cut(s) 319
Hpy188I TCNGA 2 cut(s) 196, 295
Hpy188III TCNNGA 3 cut(s) 64, 242, 430
HpyAV CCTTC 3 cut(s) 95, 156, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 2 cut(s) 363, 392
Hsp92II CATG 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 1 cut(s) 324
LmnI GCTCC 2 cut(s) 4, 73
LpnPI CCDG 4 cut(s) 51, 56, 384, 443
LweI GCATC 1 cut(s) 57
MaeI CTAG 2 cut(s) 77, 242
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 4 cut(s) 25, 38, 230, 402
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 2 cut(s) 332, 436
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 2 cut(s) 54, 196
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 382
NcoI CCATGG 1 cut(s) 114
NdeII GATC 1 cut(s) 324
NheI GCTAGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 120
PctI GAATGC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 118
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 164
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 312
SetI ASST 7 cut(s) 46, 78, 87, 155, 170, 207, 378
SfaNI GCATC 1 cut(s) 57
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 2 cut(s) 332, 436
SsiI CCGC 1 cut(s) 158
SspMI CTAG 2 cut(s) 77, 242
StyI CCWWGG 3 cut(s) 114, 380, 414
TasI AATT 2 cut(s) 332, 436
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 118
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 1 cut(s) 332
XbaI TCTAGA 1 cut(s) 241
XspI CTAG 2 cut(s) 77, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.