Rmu_ssc0000262.1_g000035

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000262.1
OG0009018
Physical Location & Seq
Reverse (-)
146712 .. 148218
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000262.1_g000035.1.cds

Sequence Viewer

Length: 1080 bp
atgtccattcttgaggaacctaaacaaacgcacatgcttcacttccgagaggcttctggttgcccctttgatgagaatgacattcagagatgtccattcttgaggaacctaaacaaacgcacatgcttttccttcacttctgtaaatatccccattcctgtccatggagccagcggtccaatatttgaagatggtcctaattttgatatcgcctttaagctctttcatgggaaggatggtgttgtcccactgtcagacagatcttctgataatgacattctggaagtgaagcctgaactccagttcaatcctttagctgccaaagctgccactataagtctgtcaacatttggacctggagggccttttagttttggttccttctctgacaaagggaaaaagcagagtgccaactcatccagtaagaaggaaccccctttgcagaaaggaaaatcgtcaaaacatgaggcagtgggaaatgattggttaaaaacaggtaactgcccaattgccaagtcatatagagctgtgagctctgttttaccacttgttgcgacagcacttcagccacccgctggcatgaagctcaaatgtccgcctgcagtagttgctgcaagggcagcccttgctcgcaccacctttgttaaaaacctacggcctcagcccctacctgcaaaaatgcttgtcattgcagccttaggtatggcagtcaacattccattaggcatgtggaaggagcacactacaaaattttccctctcatggtttgcagcagtgcatgctgctgtgcccttcatagccatgcttaggaaatcagttctgatccccaaaacagccatggcattgacaatcgcggcatctatcttaggacaggttattggttcaagagctgagaggatccggatgaaagcagtgactgagagattcagggagccagcacagacaacagttgaaagtgctggctttagctcaagccaggttgatggcataacaggcggtcattgtggtgccgaaggaatggtgttcaattctcaaggtgtgacgggtgccagaccaacttcaactaatgtatgcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

38.42

Weight (kDa)

9.66

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 679
AccB1I GGYRCC 2 cut(s) 1007, 1046
AccB7I CCANNNNNTGG 1 cut(s) 575
AccII CGCG 1 cut(s) 854
AccIII TCCGGA 1 cut(s) 900
AciI CCGC 5 cut(s) 174, 573, 596, 854, 996
AclWI GGATC 3 cut(s) 817, 892, 905
AcsI RAATTY 1 cut(s) 749
AcuI CTGAAG 1 cut(s) 548
AfiI CCNNNNNNNGG 4 cut(s) 164, 575, 762, 807
AgsI TTSAA 6 cut(s) 188, 307, 885, 953, 1027, 1062
AjnI CCWGG 2 cut(s) 355, 975
AluBI AGCT 8 cut(s) 220, 317, 326, 527, 534, 586, 890, 969
AluI AGCT 8 cut(s) 220, 317, 326, 527, 534, 586, 890, 969
Alw21I GWGCWC 2 cut(s) 536, 741
AlwI GGATC 3 cut(s) 817, 892, 905
AlwNI CAGNNNCTG 1 cut(s) 917
Aor13HI TCCGGA 1 cut(s) 900
AoxI GGCC 2 cut(s) 362, 656
ApeKI GCWGC 7 cut(s) 317, 326, 611, 620, 692, 770, 782
ApoI RAATTY 1 cut(s) 749
AspS9I GGNCC 4 cut(s) 176, 194, 353, 362
AvaII GGWCC 3 cut(s) 176, 194, 353
AxyI CCTNAGG 1 cut(s) 697
BaeGI GKGCMC 1 cut(s) 792
BamHI GGATCC 1 cut(s) 897
BanI GGYRCC 2 cut(s) 1007, 1046
BanII GRGCYC 1 cut(s) 536
Bbv12I GWGCWC 2 cut(s) 536, 741
BbvCI CCTCAGC 1 cut(s) 660
BbvI GCAGC 7 cut(s) 304, 313, 598, 632, 704, 769, 782
BccI CCATC 3 cut(s) 185, 230, 977
BceAI ACGGC 1 cut(s) 671
BciT130I CCWGG 2 cut(s) 357, 977
BfmI CTRYAG 1 cut(s) 600
BfuAI ACCTGC 1 cut(s) 679
BglII AGATCT 1 cut(s) 260
BisI GCNGC 8 cut(s) 318, 327, 612, 621, 693, 771, 783, 855
BlsI GCNGC 8 cut(s) 319, 328, 613, 622, 694, 772, 784, 856
Bme1390I CCNGG 2 cut(s) 357, 977
Bme18I GGWCC 3 cut(s) 176, 194, 353
BmgT120I GGNCC 4 cut(s) 176, 194, 353, 362
BmiI GGNNCC 9 cut(s) 18, 107, 169, 379, 432, 899, 933, 1009, 1048
BmrFI CCNGG 2 cut(s) 357, 977
BmsI GCATC 1 cut(s) 866
BpmI CTGGAG 2 cut(s) 284, 378
Bpu10I CCTNAGC 2 cut(s) 660, 806
BpuEI CTTGAG 4 cut(s) 32, 121, 955, 1017
BsaJI CCNNGG 2 cut(s) 163, 837
BsaWI WCCGGW 1 cut(s) 900
Bsc4I CCNNNNNNNGG 4 cut(s) 164, 575, 762, 807
Bse1I ACTGG 2 cut(s) 301, 420
Bse21I CCTNAGG 1 cut(s) 697
Bse3DI GCAATG 1 cut(s) 687
BseAI TCCGGA 1 cut(s) 900
BseBI CCWGG 2 cut(s) 357, 977
BseDI CCNNGG 2 cut(s) 163, 837
BseGI GGATG 3 cut(s) 241, 416, 909
BseLI CCNNNNNNNGG 4 cut(s) 164, 575, 762, 807
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 3 cut(s) 674, 882, 909
BseNI ACTGG 2 cut(s) 301, 420
BseSI GKGCMC 1 cut(s) 792
BseXI GCAGC 7 cut(s) 304, 313, 598, 632, 704, 769, 782
Bsh1236I CGCG 1 cut(s) 854
BshFI GGCC 2 cut(s) 364, 658
BshNI GGYRCC 2 cut(s) 1007, 1046
BsiHKAI GWGCWC 2 cut(s) 536, 741
BsiSI CCGG 1 cut(s) 901
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 4 cut(s) 164, 575, 762, 807
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 2 cut(s) 364, 658
Bsp1286I GDGCHC 3 cut(s) 536, 741, 792
Bsp13I TCCGGA 1 cut(s) 900
Bsp143I GATC 3 cut(s) 260, 822, 897
Bsp19I CCATGG 2 cut(s) 163, 837
BspACI CCGC 5 cut(s) 174, 573, 596, 854, 996
BspANI GGCC 2 cut(s) 364, 658
BspCNI CTCAG 3 cut(s) 673, 883, 910
BspEI TCCGGA 1 cut(s) 900
BspFNI CGCG 1 cut(s) 854
BspLI GGNNCC 9 cut(s) 18, 107, 169, 379, 432, 899, 933, 1009, 1048
BspMAI CTGCAG 1 cut(s) 604
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 3 cut(s) 817, 892, 905
BspT107I GGYRCC 2 cut(s) 1007, 1046
BsrDI GCAATG 1 cut(s) 687
BsrI ACTGG 2 cut(s) 301, 420
BssECI CCNNGG 2 cut(s) 163, 837
BssMI GATC 3 cut(s) 260, 822, 897
BssT1I CCWWGG 2 cut(s) 163, 837
Bst2UI CCWGG 2 cut(s) 357, 977
Bst4CI ACNGT 2 cut(s) 252, 949
BstAPI GCANNNNNTGC 3 cut(s) 608, 626, 779
BstC8I GCNNGC 7 cut(s) 172, 577, 600, 631, 780, 936, 961
BstDEI CTNAG 6 cut(s) 660, 697, 806, 865, 891, 918
BstDSI CCRYGG 2 cut(s) 163, 837
BstF5I GGATG 3 cut(s) 241, 416, 909
BstFNI CGCG 1 cut(s) 854
BstKTI GATC 3 cut(s) 263, 825, 900
BstMBI GATC 3 cut(s) 260, 822, 897
BstMWI GCNNNNNNNGC 8 cut(s) 323, 326, 608, 617, 620, 626, 779, 993
BstNI CCWGG 2 cut(s) 357, 977
BstNSI RCATGY 4 cut(s) 37, 126, 730, 782
BstSCI CCNGG 2 cut(s) 355, 975
BstSFI CTRYAG 1 cut(s) 600
BstSLI GKGCMC 1 cut(s) 792
BstUI CGCG 1 cut(s) 854
BstV1I GCAGC 7 cut(s) 304, 313, 598, 632, 704, 769, 782
BstX2I RGATCY 2 cut(s) 260, 897
BstXI CCANNNNNNTGG 1 cut(s) 983
BstYI RGATCY 2 cut(s) 260, 897
Bsu36I CCTNAGG 1 cut(s) 697
BsuRI GGCC 2 cut(s) 364, 658
BtgI CCRYGG 2 cut(s) 163, 837
BtsCI GGATG 3 cut(s) 241, 416, 909
BtsI GCAGTG 3 cut(s) 477, 780, 918
BtsIMutI CAGTG 4 cut(s) 248, 477, 780, 918
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 7 cut(s) 172, 577, 600, 631, 780, 936, 961
CaiI CAGNNNCTG 1 cut(s) 917
Cfr13I GGNCC 4 cut(s) 176, 194, 353, 362
DdeI CTNAG 6 cut(s) 660, 697, 806, 865, 891, 918
DpnI GATC 3 cut(s) 262, 824, 899
DpnII GATC 3 cut(s) 260, 822, 897
EciI GGCGGA 1 cut(s) 585
Ecl136II GAGCTC 1 cut(s) 534
Eco130I CCWWGG 2 cut(s) 163, 837
Eco24I GRGCYC 1 cut(s) 536
Eco32I GATATC 1 cut(s) 208
Eco47I GGWCC 3 cut(s) 176, 194, 353
Eco53kI GAGCTC 1 cut(s) 534
Eco57I CTGAAG 1 cut(s) 548
Eco81I CCTNAGG 1 cut(s) 697
EcoICRI GAGCTC 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 355, 975
EcoRV GATATC 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 163, 837
EcoT38I GRGCYC 1 cut(s) 536
ErhI CCWWGG 2 cut(s) 163, 837
FaqI GGGAC 1 cut(s) 230
FauI CCCGC 1 cut(s) 580
Fnu4HI GCNGC 8 cut(s) 318, 327, 612, 621, 693, 771, 783, 855
FokI GGATG 3 cut(s) 248, 403, 916
FriOI GRGCYC 1 cut(s) 536
Fsp4HI GCNGC 8 cut(s) 318, 327, 612, 621, 693, 771, 783, 855
GluI GCNGC 8 cut(s) 318, 327, 612, 621, 693, 771, 783, 855
GsuI CTGGAG 2 cut(s) 284, 378
HaeIII GGCC 2 cut(s) 364, 658
HapII CCGG 1 cut(s) 901
HincII GTYRAC 2 cut(s) 345, 712
HindII GTYRAC 2 cut(s) 345, 712
HinfI GANTC 1 cut(s) 924
HpaII CCGG 1 cut(s) 901
Hpy166II GTNNAC 2 cut(s) 345, 712
Hpy188I TCNGA 6 cut(s) 47, 87, 256, 268, 388, 822
Hpy188III TCNNGA 5 cut(s) 11, 100, 281, 885, 901
Hpy8I GTNNAC 2 cut(s) 345, 712
HpyAV CCTTC 7 cut(s) 142, 226, 391, 421, 727, 802, 1007
HpyCH4III ACNGT 2 cut(s) 252, 949
HpyCH4V TGCA 7 cut(s) 442, 602, 614, 674, 692, 770, 778
HpyF10VI GCNNNNNNNGC 8 cut(s) 323, 326, 608, 617, 620, 626, 779, 993
HpyF3I CTNAG 6 cut(s) 660, 697, 806, 865, 891, 918
Kpn2I TCCGGA 1 cut(s) 900
Kzo9I GATC 3 cut(s) 260, 822, 897
LmnI GCTCC 3 cut(s) 167, 736, 931
Lsp1109I GCAGC 7 cut(s) 304, 313, 598, 632, 704, 769, 782
LweI GCATC 1 cut(s) 866
MaeIII GTNAC 3 cut(s) 497, 913, 1039
MalI GATC 3 cut(s) 262, 824, 899
MboI GATC 3 cut(s) 260, 822, 897
MboII GAAGA 2 cut(s) 200, 255
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 2 cut(s) 260, 897
MhlI GDGCHC 3 cut(s) 536, 741, 792
MluCI AATT 4 cut(s) 199, 507, 749, 1027
MnlI CCTC 8 cut(s) 7, 43, 96, 353, 460, 669, 767, 888
MroI TCCGGA 1 cut(s) 900
MseI TTAA 4 cut(s) 216, 488, 645, 1078
MslI CAYNNNNRTG 2 cut(s) 800, 1005
MspA1I CMGCKG 2 cut(s) 174, 575
MspI CCGG 1 cut(s) 901
MspR9I CCNGG 2 cut(s) 357, 977
MunI CAATTG 1 cut(s) 507
MvaI CCWGG 2 cut(s) 357, 977
MvnI CGCG 1 cut(s) 854
MwoI GCNNNNNNNGC 8 cut(s) 323, 326, 608, 617, 620, 626, 779, 993
NcoI CCATGG 2 cut(s) 163, 837
NdeII GATC 3 cut(s) 260, 822, 897
NlaIV GGNNCC 9 cut(s) 18, 107, 169, 379, 432, 899, 933, 1009, 1048
NmuCI GTSAC 2 cut(s) 913, 1039
NspI RCATGY 4 cut(s) 37, 126, 730, 782
PaeI GCATGC 1 cut(s) 782
PfeI GAWTC 1 cut(s) 924
PflMI CCANNNNNTGG 1 cut(s) 575
PkrI GCNGC 8 cut(s) 319, 328, 613, 622, 694, 772, 784, 856
Psp124BI GAGCTC 1 cut(s) 536
Psp6I CCWGG 2 cut(s) 355, 975
PspGI CCWGG 2 cut(s) 355, 975
PspN4I GGNNCC 9 cut(s) 18, 107, 169, 379, 432, 899, 933, 1009, 1048
PspPI GGNCC 4 cut(s) 176, 194, 353, 362
PstI CTGCAG 1 cut(s) 604
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 2 cut(s) 260, 897
RseI CAYNNNNRTG 2 cut(s) 800, 1005
SacI GAGCTC 1 cut(s) 536
SaqAI TTAA 4 cut(s) 216, 488, 645, 1078
SatI GCNGC 8 cut(s) 318, 327, 612, 621, 693, 771, 783, 855
Sau3AI GATC 3 cut(s) 260, 822, 897
Sau96I GGNCC 4 cut(s) 176, 194, 353, 362
ScrFI CCNGG 2 cut(s) 357, 977
SduI GDGCHC 3 cut(s) 536, 741, 792
SfaNI GCATC 1 cut(s) 866
SfcI CTRYAG 1 cut(s) 600
SinI GGWCC 3 cut(s) 176, 194, 353
SmiMI CAYNNNNRTG 2 cut(s) 800, 1005
SmlI CTYRAG 4 cut(s) 11, 100, 970, 1032
SmoI CTYRAG 4 cut(s) 11, 100, 970, 1032
SphI GCATGC 1 cut(s) 782
Sse9I AATT 4 cut(s) 199, 507, 749, 1027
SsiI CCGC 5 cut(s) 174, 573, 596, 854, 996
SspI AATATT 1 cut(s) 183
SstI GAGCTC 1 cut(s) 536
StyD4I CCNGG 2 cut(s) 355, 975
StyI CCWWGG 2 cut(s) 163, 837
TaaI ACNGT 2 cut(s) 252, 949
TasI AATT 4 cut(s) 199, 507, 749, 1027
TauI GCSGC 1 cut(s) 857
TfiI GAWTC 1 cut(s) 924
Tru1I TTAA 4 cut(s) 216, 488, 645, 1078
Tru9I TTAA 4 cut(s) 216, 488, 645, 1078
TscAI CASTG 4 cut(s) 255, 477, 780, 918
TseFI GTSAC 2 cut(s) 913, 1039
TseI GCWGC 7 cut(s) 317, 326, 611, 620, 692, 770, 782
Tsp45I GTSAC 2 cut(s) 913, 1039
TspDTI ATGAA 4 cut(s) 215, 596, 784, 920
TspRI CASTG 4 cut(s) 255, 477, 780, 918
Van91I CCANNNNNTGG 1 cut(s) 575
VpaK11BI GGWCC 3 cut(s) 176, 194, 353
XapI RAATTY 1 cut(s) 749
XceI RCATGY 4 cut(s) 37, 126, 730, 782
XcmI CCANNNNNNNNNTGG 2 cut(s) 726, 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.