Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009018

Physical Location & Seq

Genomic Coordinates Reverse (-)

40211786 .. 40213275

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002811

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGATTTTCTGTTTAAAGGAATGAATGGAGAGGCTTCTGGTTGCCCCTTTGATGAGAATGACATTCAGAGATGTCCATTCTTGAGGAACCTAAACAAACCCACATGCTTTTCCTTCACTTCCGTAAATATTCCCATTCCTGTCCATGGAGCCAGTGGTCCAATATTTGAAGATGGTCCTAATTTTGATATTGCCTTTAAGCTCTTTCATGGGAAGGATGGTGTTGTCCCACTGTCAGACAGATCTTCTGATAATGACATTCTGGAAGTGAAGCCTGAACTCCAGTTCAATCCTTTAGCTGCCAAAGCTGCCACCATAAGTCTGTCAACATTTGGACCTGGGGGGCCTTTTAGTTTTGGTTCCTTCTCTGACAAAGGGAAAAAGCAGAACTCCAACTCATCCAGTAAGAAGGAACCCCCTTCGCAGAAAGGAAAATCGTCAAAACATGAGGCAGTGGGAAATGATTGGTTAAAAACAGGTAACTGCCCAATTGCCAAGTCATATAGAGCTGTGAGCTCTGTTTTACCACTTGTTGCGACAGCACTTCAGCCACCCGCTGGCATGAAGCTCAAATGTCCGCCTGCAGTAGTTGCTGCAAGGGCAGCCCTTGCCCGCACCACCTTTGTTAAAAATCTACGCCCTCAGCCCCTACCTGCAAAAATGCTTGTCATTGCAGCCTTAGGTATGGCAGTCAACATTCCATTAGGCATGTGGAAGGAGCACACTACAAAATTTTCCCTCTCATGGTTTGCAGCAGTGCATGCTGCTGTGCCCTTCATAGCCATGCTTAGGAAATCAGTTCTGATCCCCAAAACAGCCATGGCATTGACAATCGCAGCATCTATCTTAGGACAGGTTATTGGTTCAAGAGCTGAGCGGATCCGGATGAAAGCAGTGATTGAGAGATTCAGGGAGCCAGCACAGACAACAGTTGAAAGTGCTGGCTTTAGCTCAAGCCAGGTTGATGGCATAACAGGCGGTCATTGTGGTGCCGAAGGAATGATGTTCAATTCTCAAGGTGTGACGGGTACCAGACCAACTTCAACTAATGTATGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

37.61

Weight (kDa)

9.6

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45410 AT5G45410 AT5G45410 AT5G45410 AT5G45410
fragaria_vesca	FvH4_5g23940 FvH4_5g23940
prunus_persica	Prupe.5G021000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0213371
rosa_laevigata	RLG00000002811
rosa_multiflora	Rmu_co8273487.1_g000001 Rmu_ssc0000262.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246050
rosa_rugosa	Rorug07G0141600.1 Rorug07G0141700.1 Rorug07G0141800 Rorug07G0141900
rosa_samantha	Rh7AG273500 Rh7BG268800 Rh7CG292600 Rh7DG280900
rosa_wichuraiana	Rw7G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	661
Acc65I	GGTACC	1 cut(s)	1028
AccB1I	GGYRCC	2 cut(s)	989, 1028
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	877
AccIII	TCCGGA	1 cut(s)	882
AciI	CCGC	5 cut(s)	555, 578, 613, 877, 978
AclWI	GGATC	3 cut(s)	799, 874, 887
AcsI	RAATTY	1 cut(s)	731
AcuI	CTGAAG	1 cut(s)	530
AfaI	GTAC	1 cut(s)	1030
AfiI	CCNNNNNNNGG	4 cut(s)	146, 557, 744, 789
AgsI	TTSAA	6 cut(s)	170, 289, 867, 935, 1009, 1044
AjnI	CCWGG	2 cut(s)	337, 957
AluBI	AGCT	8 cut(s)	202, 299, 308, 509, 516, 568, 872, 951
AluI	AGCT	8 cut(s)	202, 299, 308, 509, 516, 568, 872, 951
Alw21I	GWGCWC	2 cut(s)	518, 723
AlwI	GGATC	3 cut(s)	799, 874, 887
Aor13HI	TCCGGA	1 cut(s)	882
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	8 cut(s)	299, 308, 593, 602, 674, 752, 764, 836
ApoI	RAATTY	1 cut(s)	731
Asp718I	GGTACC	1 cut(s)	1028
AspS9I	GGNCC	4 cut(s)	158, 176, 335, 344
AvaII	GGWCC	3 cut(s)	158, 176, 335
AxyI	CCTNAGG	1 cut(s)	679
BaeGI	GKGCMC	1 cut(s)	774
BamHI	GGATCC	1 cut(s)	879
BanI	GGYRCC	2 cut(s)	989, 1028
BanII	GRGCYC	1 cut(s)	518
Bbv12I	GWGCWC	2 cut(s)	518, 723
BbvCI	CCTCAGC	1 cut(s)	642
BbvI	GCAGC	8 cut(s)	286, 295, 580, 614, 686, 751, 764, 848
BccI	CCATC	3 cut(s)	167, 212, 959
BciT130I	CCWGG	2 cut(s)	339, 959
BfmI	CTRYAG	1 cut(s)	582
BfuAI	ACCTGC	1 cut(s)	661
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	8 cut(s)	300, 309, 594, 603, 675, 753, 765, 837
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	8 cut(s)	301, 310, 595, 604, 676, 754, 766, 838
Bme1390I	CCNGG	2 cut(s)	339, 959
Bme18I	GGWCC	3 cut(s)	158, 176, 335
BmgT120I	GGNCC	4 cut(s)	158, 176, 335, 344
BmiI	GGNNCC	9 cut(s)	89, 151, 345, 361, 414, 881, 915, 991, 1030
BmrFI	CCNGG	2 cut(s)	339, 959
BmsI	GCATC	1 cut(s)	848
BpmI	CTGGAG	1 cut(s)	266
Bpu10I	CCTNAGC	2 cut(s)	642, 788
Bpu1102I	GCTNAGC	1 cut(s)	873
BpuEI	CTTGAG	3 cut(s)	103, 937, 999
BsaJI	CCNNGG	3 cut(s)	145, 338, 819
BsaWI	WCCGGW	1 cut(s)	882
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 557, 744, 789
Bse1I	ACTGG	3 cut(s)	153, 283, 402
Bse21I	CCTNAGG	1 cut(s)	679
Bse3DI	GCAATG	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	882
BseBI	CCWGG	2 cut(s)	339, 959
BseDI	CCNNGG	3 cut(s)	145, 338, 819
BseGI	GGATG	3 cut(s)	223, 398, 891
BseLI	CCNNNNNNNGG	4 cut(s)	146, 557, 744, 789
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	2 cut(s)	656, 864
BseNI	ACTGG	3 cut(s)	153, 283, 402
BseSI	GKGCMC	1 cut(s)	774
BseXI	GCAGC	8 cut(s)	286, 295, 580, 614, 686, 751, 764, 848
BshFI	GGCC	1 cut(s)	346
BshNI	GGYRCC	2 cut(s)	989, 1028
BsiHKAI	GWGCWC	2 cut(s)	518, 723
BsiSI	CCGG	1 cut(s)	883
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	4 cut(s)	146, 557, 744, 789
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	346
Bsp1286I	GDGCHC	3 cut(s)	518, 723, 774
Bsp13I	TCCGGA	1 cut(s)	882
Bsp143I	GATC	3 cut(s)	242, 804, 879
Bsp1720I	GCTNAGC	1 cut(s)	873
Bsp19I	CCATGG	2 cut(s)	145, 819
BspACI	CCGC	5 cut(s)	555, 578, 613, 877, 978
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	2 cut(s)	655, 865
BspEI	TCCGGA	1 cut(s)	882
BspLI	GGNNCC	9 cut(s)	89, 151, 345, 361, 414, 881, 915, 991, 1030
BspMAI	CTGCAG	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	3 cut(s)	799, 874, 887
BspT107I	GGYRCC	2 cut(s)	989, 1028
BsrBI	CCGCTC	1 cut(s)	877
BsrDI	GCAATG	1 cut(s)	669
BsrI	ACTGG	3 cut(s)	153, 283, 402
BssECI	CCNNGG	3 cut(s)	145, 338, 819
BssMI	GATC	3 cut(s)	242, 804, 879
BssT1I	CCWWGG	2 cut(s)	145, 819
Bst2UI	CCWGG	2 cut(s)	339, 959
Bst4CI	ACNGT	2 cut(s)	234, 931
BstAPI	GCANNNNNTGC	3 cut(s)	590, 608, 761
BstC8I	GCNNGC	6 cut(s)	559, 582, 613, 762, 918, 943
BstDEI	CTNAG	5 cut(s)	642, 679, 788, 847, 873
BstDSI	CCRYGG	2 cut(s)	145, 819
BstF5I	GGATG	3 cut(s)	223, 398, 891
BstKTI	GATC	3 cut(s)	245, 807, 882
BstMBI	GATC	3 cut(s)	242, 804, 879
BstMWI	GCNNNNNNNGC	8 cut(s)	305, 308, 590, 599, 602, 608, 761, 975
BstNI	CCWGG	2 cut(s)	339, 959
BstNSI	RCATGY	3 cut(s)	108, 712, 764
BstSCI	CCNGG	2 cut(s)	337, 957
BstSFI	CTRYAG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	774
BstV1I	GCAGC	8 cut(s)	286, 295, 580, 614, 686, 751, 764, 848
BstX2I	RGATCY	2 cut(s)	242, 879
BstXI	CCANNNNNNTGG	1 cut(s)	965
BstYI	RGATCY	2 cut(s)	242, 879
Bsu36I	CCTNAGG	1 cut(s)	679
BsuRI	GGCC	1 cut(s)	346
BtgI	CCRYGG	2 cut(s)	145, 819
BtsCI	GGATG	3 cut(s)	223, 398, 891
BtsI	GCAGTG	3 cut(s)	459, 762, 900
BtsIMutI	CAGTG	5 cut(s)	160, 230, 459, 762, 900
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	6 cut(s)	559, 582, 613, 762, 918, 943
Cfr13I	GGNCC	4 cut(s)	158, 176, 335, 344
Csp6I	GTAC	1 cut(s)	1029
CviQI	GTAC	1 cut(s)	1029
DdeI	CTNAG	5 cut(s)	642, 679, 788, 847, 873
DpnI	GATC	3 cut(s)	244, 806, 881
DpnII	GATC	3 cut(s)	242, 804, 879
DraI	TTTAAA	1 cut(s)	16
EciI	GGCGGA	1 cut(s)	567
Ecl136II	GAGCTC	1 cut(s)	516
Eco130I	CCWWGG	2 cut(s)	145, 819
Eco24I	GRGCYC	1 cut(s)	518
Eco47I	GGWCC	3 cut(s)	158, 176, 335
Eco53kI	GAGCTC	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	530
Eco81I	CCTNAGG	1 cut(s)	679
EcoICRI	GAGCTC	1 cut(s)	516
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	337, 957
EcoT14I	CCWWGG	2 cut(s)	145, 819
EcoT38I	GRGCYC	1 cut(s)	518
ErhI	CCWWGG	2 cut(s)	145, 819
FaqI	GGGAC	1 cut(s)	212
FauI	CCCGC	2 cut(s)	562, 620
Fnu4HI	GCNGC	8 cut(s)	300, 309, 594, 603, 675, 753, 765, 837
FokI	GGATG	3 cut(s)	230, 385, 898
FriOI	GRGCYC	1 cut(s)	518
Fsp4HI	GCNGC	8 cut(s)	300, 309, 594, 603, 675, 753, 765, 837
GluI	GCNGC	8 cut(s)	300, 309, 594, 603, 675, 753, 765, 837
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	883
HincII	GTYRAC	2 cut(s)	327, 694
HindII	GTYRAC	2 cut(s)	327, 694
HinfI	GANTC	1 cut(s)	906
HpaII	CCGG	1 cut(s)	883
Hpy166II	GTNNAC	2 cut(s)	327, 694
Hpy188I	TCNGA	5 cut(s)	69, 238, 250, 370, 804
Hpy188III	TCNNGA	4 cut(s)	82, 263, 867, 883
Hpy8I	GTNNAC	2 cut(s)	327, 694
HpyAV	CCTTC	8 cut(s)	124, 208, 373, 403, 429, 709, 784, 989
HpyCH4III	ACNGT	2 cut(s)	234, 931
HpyCH4V	TGCA	6 cut(s)	584, 596, 656, 674, 752, 760
HpyF10VI	GCNNNNNNNGC	8 cut(s)	305, 308, 590, 599, 602, 608, 761, 975
HpyF3I	CTNAG	5 cut(s)	642, 679, 788, 847, 873
Kpn2I	TCCGGA	1 cut(s)	882
KpnI	GGTACC	1 cut(s)	1032
Kzo9I	GATC	3 cut(s)	242, 804, 879
LmnI	GCTCC	3 cut(s)	149, 718, 913
Lsp1109I	GCAGC	8 cut(s)	286, 295, 580, 614, 686, 751, 764, 848
LweI	GCATC	1 cut(s)	848
MaeIII	GTNAC	2 cut(s)	479, 1021
MalI	GATC	3 cut(s)	244, 806, 881
MbiI	CCGCTC	1 cut(s)	877
MboI	GATC	3 cut(s)	242, 804, 879
MboII	GAAGA	2 cut(s)	182, 237
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	2 cut(s)	242, 879
MhlI	GDGCHC	3 cut(s)	518, 723, 774
MluCI	AATT	4 cut(s)	181, 489, 731, 1009
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	5 cut(s)	25, 78, 442, 651, 749
MroI	TCCGGA	1 cut(s)	882
MseI	TTAA	5 cut(s)	15, 198, 470, 627, 1060
MslI	CAYNNNNRTG	2 cut(s)	782, 987
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	1 cut(s)	883
MspR9I	CCNGG	2 cut(s)	339, 959
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	2 cut(s)	339, 959
MwoI	GCNNNNNNNGC	8 cut(s)	305, 308, 590, 599, 602, 608, 761, 975
NcoI	CCATGG	2 cut(s)	145, 819
NdeII	GATC	3 cut(s)	242, 804, 879
NlaIV	GGNNCC	9 cut(s)	89, 151, 345, 361, 414, 881, 915, 991, 1030
NmuCI	GTSAC	1 cut(s)	1021
NspI	RCATGY	3 cut(s)	108, 712, 764
PaeI	GCATGC	1 cut(s)	764
PfeI	GAWTC	1 cut(s)	906
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	8 cut(s)	301, 310, 595, 604, 676, 754, 766, 838
Psp124BI	GAGCTC	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	337, 957
PspGI	CCWGG	2 cut(s)	337, 957
PspN4I	GGNNCC	9 cut(s)	89, 151, 345, 361, 414, 881, 915, 991, 1030
PspPI	GGNCC	4 cut(s)	158, 176, 335, 344
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	242, 879
RsaI	GTAC	1 cut(s)	1030
RsaNI	GTAC	1 cut(s)	1029
RseI	CAYNNNNRTG	2 cut(s)	782, 987
SacI	GAGCTC	1 cut(s)	518
SaqAI	TTAA	5 cut(s)	15, 198, 470, 627, 1060
SatI	GCNGC	8 cut(s)	300, 309, 594, 603, 675, 753, 765, 837
Sau3AI	GATC	3 cut(s)	242, 804, 879
Sau96I	GGNCC	4 cut(s)	158, 176, 335, 344
ScrFI	CCNGG	2 cut(s)	339, 959
SduI	GDGCHC	3 cut(s)	518, 723, 774
SfaNI	GCATC	1 cut(s)	848
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	3 cut(s)	158, 176, 335
SmiMI	CAYNNNNRTG	2 cut(s)	782, 987
SmlI	CTYRAG	3 cut(s)	82, 952, 1014
SmoI	CTYRAG	3 cut(s)	82, 952, 1014
SphI	GCATGC	1 cut(s)	764
Sse9I	AATT	4 cut(s)	181, 489, 731, 1009
SsiI	CCGC	5 cut(s)	555, 578, 613, 877, 978
SspI	AATATT	2 cut(s)	130, 165
SstI	GAGCTC	1 cut(s)	518
StyD4I	CCNGG	2 cut(s)	337, 957
StyI	CCWWGG	2 cut(s)	145, 819
TaaI	ACNGT	2 cut(s)	234, 931
TasI	AATT	4 cut(s)	181, 489, 731, 1009
TfiI	GAWTC	1 cut(s)	906
Tru1I	TTAA	5 cut(s)	15, 198, 470, 627, 1060
Tru9I	TTAA	5 cut(s)	15, 198, 470, 627, 1060
TscAI	CASTG	5 cut(s)	160, 237, 459, 762, 900
TseFI	GTSAC	1 cut(s)	1021
TseI	GCWGC	8 cut(s)	299, 308, 593, 602, 674, 752, 764, 836
Tsp45I	GTSAC	1 cut(s)	1021
TspDTI	ATGAA	5 cut(s)	38, 197, 578, 766, 902
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	5 cut(s)	160, 237, 459, 762, 900
Van91I	CCANNNNNTGG	1 cut(s)	557
VpaK11BI	GGWCC	3 cut(s)	158, 176, 335
XapI	RAATTY	1 cut(s)	731
XceI	RCATGY	3 cut(s)	108, 712, 764
XcmI	CCANNNNNNNNNTGG	3 cut(s)	152, 708, 817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.