Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8273487.1

Orthogroup ID

OG0009018

Physical Location & Seq

Genomic Coordinates Reverse (-)

189 .. 689

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8273487.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgaagctcaaatgtccgcctgcagtagttgctgcaagggcagcccttgctcgcaccacctttgttaaaaacctacggcctcagcccctacctgcaaaaatgcttgtcattgcagccttaggtatggcagtcaacattccattaggcatgtggaaggagcacactacaaaattttccctctcatggtttgcagcagtgcatgctgctgtgcccttcatagccatgcttaggaaatcagttctgatccccaaaacagccatggcattgacaatcgcggcatctatcttaggacaggttattggttcaagagctgagaggatccggatgaaagcagtgactgagagattcagggagccagcacagacaacagttgaaagtgctggctttagctcaagccaggttgatggcataacaggcggtcattgtggtgccgaaggaatggtgttcaattctcaaggtgtgacgggtgccagatcaacttcaactaatgtatgcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

17.6

Weight (kDa)

10.72

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45410 AT5G45410 AT5G45410 AT5G45410 AT5G45410
fragaria_vesca	FvH4_5g23940 FvH4_5g23940
prunus_persica	Prupe.5G021000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0213371
rosa_laevigata	RLG00000002811
rosa_multiflora	Rmu_co8273487.1_g000001 Rmu_ssc0000262.1_g000035
rosa_roxburghii	Rroxscaffold_3G00246050
rosa_rugosa	Rorug07G0141600.1 Rorug07G0141700.1 Rorug07G0141800 Rorug07G0141900
rosa_samantha	Rh7AG273500 Rh7BG268800 Rh7CG292600 Rh7DG280900
rosa_wichuraiana	Rw7G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AccB1I	GGYRCC	2 cut(s)	428, 467
AccII	CGCG	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	321
AciI	CCGC	3 cut(s)	17, 275, 417
AclWI	GGATC	3 cut(s)	238, 313, 326
AcsI	RAATTY	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	183, 228
AgsI	TTSAA	4 cut(s)	306, 374, 448, 483
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	3 cut(s)	7, 311, 390
AluI	AGCT	3 cut(s)	7, 311, 390
Alw21I	GWGCWC	1 cut(s)	162
AlwI	GGATC	3 cut(s)	238, 313, 326
AlwNI	CAGNNNCTG	1 cut(s)	338
Aor13HI	TCCGGA	1 cut(s)	321
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	5 cut(s)	32, 41, 113, 191, 203
ApoI	RAATTY	1 cut(s)	170
AxyI	CCTNAGG	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	318
BanI	GGYRCC	2 cut(s)	428, 467
Bbv12I	GWGCWC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	5 cut(s)	19, 53, 125, 190, 203
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	6 cut(s)	33, 42, 114, 192, 204, 276
BlsI	GCNGC	6 cut(s)	34, 43, 115, 193, 205, 277
Bme1390I	CCNGG	1 cut(s)	398
BmiI	GGNNCC	4 cut(s)	320, 354, 430, 469
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	1 cut(s)	287
Bpu10I	CCTNAGC	2 cut(s)	81, 227
BpuEI	CTTGAG	2 cut(s)	376, 438
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 228
Bse21I	CCTNAGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	108
BseAI	TCCGGA	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	183, 228
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	3 cut(s)	95, 303, 330
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	5 cut(s)	19, 53, 125, 190, 203
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	79
BshNI	GGYRCC	2 cut(s)	428, 467
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	183, 228
BsnI	GGCC	1 cut(s)	79
Bsp1286I	GDGCHC	2 cut(s)	162, 213
Bsp13I	TCCGGA	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	243, 318, 473
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	3 cut(s)	17, 275, 417
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	3 cut(s)	94, 304, 331
BspEI	TCCGGA	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	4 cut(s)	320, 354, 430, 469
BspMAI	CTGCAG	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	3 cut(s)	238, 313, 326
BspT107I	GGYRCC	2 cut(s)	428, 467
BsrDI	GCAATG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	243, 318, 473
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	370
BstAPI	GCANNNNNTGC	3 cut(s)	29, 47, 200
BstC8I	GCNNGC	5 cut(s)	21, 52, 201, 357, 382
BstDEI	CTNAG	6 cut(s)	81, 118, 227, 286, 312, 339
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	3 cut(s)	246, 321, 476
BstMBI	GATC	3 cut(s)	243, 318, 473
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 38, 41, 47, 200, 414
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	2 cut(s)	151, 203
BstSCI	CCNGG	1 cut(s)	396
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	5 cut(s)	19, 53, 125, 190, 203
BstX2I	RGATCY	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	318
Bsu36I	CCTNAGG	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	2 cut(s)	201, 339
BtsIMutI	CAGTG	2 cut(s)	201, 339
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	5 cut(s)	21, 52, 201, 357, 382
CaiI	CAGNNNCTG	1 cut(s)	338
CviAII	CATG	5 cut(s)	148, 183, 200, 223, 259
DdeI	CTNAG	6 cut(s)	81, 118, 227, 286, 312, 339
DpnI	GATC	3 cut(s)	245, 320, 475
DpnII	GATC	3 cut(s)	243, 318, 473
EciI	GGCGGA	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	258
Eco81I	CCTNAGG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	5 cut(s)	151, 186, 203, 226, 262
FaiI	YATR	9 cut(s)	125, 149, 184, 201, 218, 224, 260, 410, 493
FatI	CATG	5 cut(s)	147, 182, 199, 222, 258
Fnu4HI	GCNGC	6 cut(s)	33, 42, 114, 192, 204, 276
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	6 cut(s)	33, 42, 114, 192, 204, 276
GluI	GCNGC	6 cut(s)	33, 42, 114, 192, 204, 276
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	322
Hin1II	CATG	5 cut(s)	151, 186, 203, 226, 262
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	2 cut(s)	306, 322
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	3 cut(s)	148, 223, 428
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	6 cut(s)	23, 35, 95, 113, 191, 199
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 38, 41, 47, 200, 414
HpyF3I	CTNAG	6 cut(s)	81, 118, 227, 286, 312, 339
Hsp92II	CATG	5 cut(s)	151, 186, 203, 226, 262
Kpn2I	TCCGGA	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	243, 318, 473
LmnI	GCTCC	2 cut(s)	157, 352
Lsp1109I	GCAGC	5 cut(s)	19, 53, 125, 190, 203
LweI	GCATC	1 cut(s)	287
MaeIII	GTNAC	2 cut(s)	334, 460
MalI	GATC	3 cut(s)	245, 320, 475
MboI	GATC	3 cut(s)	243, 318, 473
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	2 cut(s)	162, 213
MluCI	AATT	2 cut(s)	170, 448
MnlI	CCTC	3 cut(s)	90, 188, 309
MroI	TCCGGA	1 cut(s)	321
MseI	TTAA	2 cut(s)	66, 499
MslI	CAYNNNNRTG	2 cut(s)	221, 426
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	6 cut(s)	29, 38, 41, 47, 200, 414
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	3 cut(s)	243, 318, 473
NlaIII	CATG	5 cut(s)	151, 186, 203, 226, 262
NlaIV	GGNNCC	4 cut(s)	320, 354, 430, 469
NmuCI	GTSAC	2 cut(s)	334, 460
NspI	RCATGY	2 cut(s)	151, 203
PaeI	GCATGC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	345
PkrI	GCNGC	6 cut(s)	34, 43, 115, 193, 205, 277
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	4 cut(s)	320, 354, 430, 469
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	318
RseI	CAYNNNNRTG	2 cut(s)	221, 426
SaqAI	TTAA	2 cut(s)	66, 499
SatI	GCNGC	6 cut(s)	33, 42, 114, 192, 204, 276
Sau3AI	GATC	3 cut(s)	243, 318, 473
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	2 cut(s)	162, 213
SfaNI	GCATC	1 cut(s)	287
SfcI	CTRYAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	2 cut(s)	221, 426
SmlI	CTYRAG	2 cut(s)	391, 453
SmoI	CTYRAG	2 cut(s)	391, 453
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	2 cut(s)	170, 448
SsiI	CCGC	3 cut(s)	17, 275, 417
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	370
TasI	AATT	2 cut(s)	170, 448
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	2 cut(s)	66, 499
Tru9I	TTAA	2 cut(s)	66, 499
TscAI	CASTG	2 cut(s)	201, 339
TseFI	GTSAC	2 cut(s)	334, 460
TseI	GCWGC	5 cut(s)	32, 41, 113, 191, 203
Tsp45I	GTSAC	2 cut(s)	334, 460
TspDTI	ATGAA	3 cut(s)	17, 205, 341
TspRI	CASTG	2 cut(s)	201, 339
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	2 cut(s)	151, 203
XcmI	CCANNNNNNNNNTGG	2 cut(s)	147, 256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.