Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005365

Physical Location & Seq

Genomic Coordinates Forward (+)

18816585 .. 18819462

Gene Structure 2878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGAGGCTTTTGCTTCCATTTTCCTCGCCGTTATCCGCCACGTCATCACCGTCGACGCCGCAATTTATCCCTGAACTTCCACCTCCGTCTCAATTTGACTACTCGGGTCTAACTAAAATTCTTAAAAAATCGGTAATCGGAACCCTAACCGGAGCTCTATCGCTCACTCTCGTTTTCTCGTCGCCGATTTCCTCCGTTGCTGCTACTAATGATCCTTATCTCTCTGTCAATCCTCCTTCGTCATCGTTTGAATCTTCTCTGAATCACTTCGATTCGGCTCCTGAAGATTGTCCTAATGAGGAAGAAGCTGATACTGAGATTCAAGATGATGACATTGAGCCTCAGTTAGTAACTAATGAAGGGATTGTTGAAGAAGCTTGGGAGATTGTTAATGGTGCCTTTCTAGATACTCGTAGCCATAGCTGGACTCCTGAAACTTGGCAGAAACAGAAGGATGATATATTAGCTAGTCCTATTAAGAGTAGATCGAAGGCTCATGAAGTGATTAAGAACATGTTGGCTAGTTTGGGTGATCAATACACTCGATTCCTATCACCAGATGAGTTTTCTAGGATGTCGAAGTATGACATTACTGGTATTGGAATTAACCTTAGAGAAGTTTCTGATGGTGGTGGAAATGTAAAGTTGAAGGTTCTTGGTCTTGTATTGGACAGTGCTGCTGATATTGCTGGTGTGAAACAGGGAGATGAAATTCTGGCTGTCAATGGAATGGATGTCAGTGGGAAATCATCCTTTGAAGTATCGTCTTTGTTACAAGGCCCTAGTAAAACTTTTGTAGTTCTCAAGGTGAAGCATGGGAAGTGTGGACCTGTTAAGTCTCTGAAAATCCAGAGACAAGTTAATGCACAGACCCCAGTTTCTTACCGGTTGGAAAAAGTTGACAATGGAACAGTCTCTGTCGGGTATATTCGTCTAAAAGAGTTCAATGCGCTGGCTAGAAAAGATTTGGTGATTGCAATGAAACGACTCCTAGACAAGGGTGCGTCTTATTTTGTAATGGATCTTAGAGATAACCTTGGTGGACTTGTGCAGGCTGGAATAGAAACTGCTAAGCTGTTCCTAGATGAAGGAGATACGGTGATATATACAGCGGGGAGAGACCCCGAGGCTCAAAAAACTGTTGTTTCAGATAAGAAACCTTTGATCACTGCCCCACTTATTGTATGTGATGAATCATGTAAGCCAGTTAATCTTTCACACTATTATGTTATTTTGCATCTTGCACTGATTAGAATCCTTATTATTGTTGCAGGTAATGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009579 GO:0016787 GO:0019538 GO:0031977 GO:0043170 GO:0044238 GO:0044424 GO:0044436 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ PDZ_2 Peptidase_S41

Protein Analysis

428

Amino Acids

46.48

Weight (kDa)

5.34

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDZ	PF00595	198 - 265	1.1e-06	PDZ domain
PDZ_6	PF17820	223 - 270	6.8e-07	PDZ domain
Peptidase_S41	PF03572	307 - 395	3.6e-15	Peptidase family S41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46390 AT5G46390
fragaria_vesca	FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310
malus_domestica	MD05G1291100.v1.1
prunus_persica	Prupe.4G074500_v2.0.a1
pyrus_communis	pycom05g26760
rosa_chinensis	RchiOBHm_Chr5g0013001
rosa_laevigata	RLG00000031976
rosa_multiflora	Rmu_sc0003892.1_g000023 Rmu_sc0005409.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063570
rosa_rugosa	Rorug05G0006100 Rorug05G0006100
rosa_samantha	Rh5AG100600 Rh5BG097000 Rh5CG109200 Rh5DG095800
rosa_wichuraiana	Rw5G008770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1262
AccB1I	GGYRCC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	3 cut(s)	36, 59, 1112
AclWI	GGATC	2 cut(s)	206, 1029
AcsI	RAATTY	2 cut(s)	117, 711
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	997
AflIII	ACRYGT	1 cut(s)	513
AgeI	ACCGGT	1 cut(s)	885
AgsI	TTSAA	6 cut(s)	251, 323, 371, 649, 758, 946
AjiI	CACGTC	1 cut(s)	42
AluBI	AGCT	6 cut(s)	155, 308, 377, 423, 467, 1075
AluI	AGCT	6 cut(s)	155, 308, 377, 423, 467, 1075
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	5 cut(s)	93, 843, 847, 919, 1113
AlwI	GGATC	2 cut(s)	206, 1029
AlwNI	CAGNNNCTG	1 cut(s)	917
Ama87I	CYCGRG	2 cut(s)	103, 1124
AoxI	GGCC	1 cut(s)	778
ApeKI	GCWGC	2 cut(s)	200, 677
ApoI	RAATTY	2 cut(s)	117, 711
AsiGI	ACCGGT	1 cut(s)	885
Asp700I	GAANNNNTTC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	952
AspS9I	GGNCC	2 cut(s)	779, 827
AsuHPI	GGTGA	6 cut(s)	39, 542, 546, 820, 982, 1111
AvaI	CYCGRG	2 cut(s)	103, 1124
AvaII	GGWCC	1 cut(s)	827
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	187, 664
BccI	CCATC	1 cut(s)	620
BceAI	ACGGC	1 cut(s)	13
BclI	TGATCA	2 cut(s)	532, 1164
BcoDI	GTCTC	5 cut(s)	93, 843, 847, 919, 1113
BfaI	CTAG	8 cut(s)	404, 468, 522, 570, 783, 957, 992, 1082
BfuAI	ACCTGC	1 cut(s)	1262
BisI	GCNGC	3 cut(s)	59, 201, 678
BlpI	GCTNAGC	1 cut(s)	1071
BlsI	GCNGC	3 cut(s)	60, 202, 679
Bme18I	GGWCC	1 cut(s)	827
BmeT110I	CYCGRG	2 cut(s)	103, 1124
BmgBI	CACGTC	1 cut(s)	42
BmgT120I	GGNCC	2 cut(s)	779, 827
BmiI	GGNNCC	3 cut(s)	142, 279, 397
BmrI	ACTGGG	1 cut(s)	869
BmsI	GCATC	1 cut(s)	1246
BmuI	ACTGGG	1 cut(s)	869
Bpu1102I	GCTNAGC	1 cut(s)	1071
BpuEI	CTTGAG	1 cut(s)	788
BsaBI	GATNNNNATC	3 cut(s)	216, 550, 1253
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	1113
BsaJI	CCNNGG	2 cut(s)	1036, 1125
BsaWI	WCCGGW	2 cut(s)	149, 885
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	1 cut(s)	997
Bse118I	RCCGGY	1 cut(s)	885
Bse1I	ACTGG	3 cut(s)	598, 875, 1205
Bse3DI	GCAATG	1 cut(s)	984
Bse8I	GATNNNNATC	3 cut(s)	216, 550, 1253
BseDI	CCNNGG	2 cut(s)	1036, 1125
BseGI	GGATG	4 cut(s)	460, 579, 739, 749
BseJI	GATNNNNATC	3 cut(s)	216, 550, 1253
BseLI	CCNNNNNNNGG	1 cut(s)	997
BseMI	GCAATG	1 cut(s)	984
BseMII	CTCAG	2 cut(s)	306, 356
BseNI	ACTGG	3 cut(s)	598, 875, 1205
BseXI	GCAGC	2 cut(s)	187, 664
BsgI	GTGCAG	1 cut(s)	1070
BshFI	GGCC	1 cut(s)	780
BshNI	GGYRCC	1 cut(s)	395
BshTI	ACCGGT	1 cut(s)	885
BsiHKAI	GWGCWC	1 cut(s)	157
BsiHKCI	CYCGRG	2 cut(s)	103, 1124
BsiSI	CCGG	2 cut(s)	150, 886
BslI	CCNNNNNNNGG	1 cut(s)	997
BsmAI	GTCTC	5 cut(s)	93, 843, 847, 919, 1113
BsmBI	CGTCTC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	780
Bso31I	GGTCTC	1 cut(s)	1113
BsoBI	CYCGRG	2 cut(s)	103, 1124
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	5 cut(s)	211, 485, 532, 1021, 1164
Bsp1720I	GCTNAGC	1 cut(s)	1071
BspACI	CCGC	3 cut(s)	36, 59, 1112
BspANI	GGCC	1 cut(s)	780
BspCNI	CTCAG	2 cut(s)	307, 355
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	3 cut(s)	142, 279, 397
BspMI	ACCTGC	1 cut(s)	1262
BspPI	GGATC	2 cut(s)	206, 1029
BspT107I	GGYRCC	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	1113
BsrDI	GCAATG	1 cut(s)	984
BsrFI	RCCGGY	1 cut(s)	885
BsrI	ACTGG	3 cut(s)	598, 875, 1205
BssAI	RCCGGY	1 cut(s)	885
BssECI	CCNNGG	2 cut(s)	1036, 1125
BssMI	GATC	5 cut(s)	211, 485, 532, 1021, 1164
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	1036
Bst4CI	ACNGT	5 cut(s)	51, 674, 913, 1099, 1141
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	954, 1053
BstDEI	CTNAG	5 cut(s)	315, 342, 611, 1025, 1071
BstENI	CCTNNNNNAGG	1 cut(s)	995
BstF5I	GGATG	4 cut(s)	460, 579, 739, 749
BstHHI	GCGC	1 cut(s)	952
BstKTI	GATC	5 cut(s)	214, 488, 535, 1024, 1167
BstMAI	GTCTC	5 cut(s)	93, 843, 847, 919, 1113
BstMBI	GATC	5 cut(s)	211, 485, 532, 1021, 1164
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNSI	RCATGY	1 cut(s)	517
BstV1I	GCAGC	2 cut(s)	187, 664
BstX2I	RGATCY	1 cut(s)	1021
BstYI	RGATCY	1 cut(s)	1021
BsuRI	GGCC	1 cut(s)	780
BtrI	CACGTC	1 cut(s)	42
BtsCI	GGATG	4 cut(s)	460, 579, 739, 749
BtsI	GCAGTG	1 cut(s)	1167
BtsIMutI	CAGTG	4 cut(s)	679, 745, 1167, 1244
BveI	ACCTGC	1 cut(s)	1262
Cac8I	GCNNGC	2 cut(s)	954, 1053
CaiI	CAGNNNCTG	1 cut(s)	917
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	1 cut(s)	952
Cfr10I	RCCGGY	1 cut(s)	885
Cfr13I	GGNCC	2 cut(s)	779, 827
CseI	GACGC	2 cut(s)	64, 993
CspAI	ACCGGT	1 cut(s)	885
CviAII	CATG	4 cut(s)	497, 514, 815, 1197
DdeI	CTNAG	5 cut(s)	315, 342, 611, 1025, 1071
DpnI	GATC	5 cut(s)	213, 487, 534, 1023, 1166
DpnII	GATC	5 cut(s)	211, 485, 532, 1021, 1164
EciI	GGCGGA	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	1036
Eco24I	GRGCYC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	1113
Eco47I	GGWCC	1 cut(s)	827
Eco53kI	GAGCTC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	2 cut(s)	103, 1124
EcoICRI	GAGCTC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	995
EcoO109I	RGGNCCY	1 cut(s)	779
EcoT14I	CCWWGG	1 cut(s)	1036
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	1036
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	4 cut(s)	500, 517, 818, 1200
FatI	CATG	4 cut(s)	496, 513, 814, 1196
FauI	CCCGC	1 cut(s)	1105
FbaI	TGATCA	2 cut(s)	532, 1164
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	3 cut(s)	59, 201, 678
FokI	GGATG	4 cut(s)	467, 586, 736, 746
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	3 cut(s)	59, 201, 678
FspBI	CTAG	8 cut(s)	404, 468, 522, 570, 783, 957, 992, 1082
GlaI	GCGC	1 cut(s)	951
GluI	GCNGC	3 cut(s)	59, 201, 678
HaeIII	GGCC	1 cut(s)	780
HapII	CCGG	2 cut(s)	150, 886
HgaI	GACGC	2 cut(s)	64, 993
HhaI	GCGC	1 cut(s)	952
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	500, 517, 818, 1200
Hin6I	GCGC	1 cut(s)	950
HinP1I	GCGC	1 cut(s)	950
HincII	GTYRAC	2 cut(s)	54, 901
HindII	GTYRAC	2 cut(s)	54, 901
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	9 cut(s)	251, 262, 272, 319, 427, 546, 987, 1193, 1254
HpaII	CCGG	2 cut(s)	150, 886
HphI	GGTGA	6 cut(s)	39, 542, 546, 820, 982, 1111
Hpy166II	GTNNAC	4 cut(s)	54, 827, 901, 1043
Hpy188I	TCNGA	5 cut(s)	140, 261, 625, 843, 1150
Hpy188III	TCNNGA	6 cut(s)	281, 323, 404, 431, 497, 850
Hpy8I	GTNNAC	4 cut(s)	54, 827, 901, 1043
Hpy99I	CGWCG	3 cut(s)	55, 58, 184
HpyAV	CCTTC	6 cut(s)	246, 353, 445, 484, 643, 1082
HpyCH4III	ACNGT	5 cut(s)	51, 674, 913, 1099, 1141
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	6 cut(s)	866, 977, 1051, 1237, 1244, 1271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	5 cut(s)	315, 342, 611, 1025, 1071
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	4 cut(s)	500, 517, 818, 1200
HspAI	GCGC	1 cut(s)	950
Ksp22I	TGATCA	2 cut(s)	532, 1164
Kzo9I	GATC	5 cut(s)	211, 485, 532, 1021, 1164
LmnI	GCTCC	2 cut(s)	152, 283
Lsp1109I	GCAGC	2 cut(s)	187, 664
LweI	GCATC	1 cut(s)	1246
MaeI	CTAG	8 cut(s)	404, 468, 522, 570, 783, 957, 992, 1082
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	349, 771
MalI	GATC	5 cut(s)	213, 487, 534, 1023, 1166
MboI	GATC	5 cut(s)	211, 485, 532, 1021, 1164
MboII	GAAGA	4 cut(s)	246, 296, 314, 383
MflI	RGATCY	1 cut(s)	1021
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	5 cut(s)	62, 92, 117, 603, 711
MlyI	GAGTC	2 cut(s)	421, 981
MmeI	TCCRAC	1 cut(s)	870
MnlI	CCTC	7 cut(s)	34, 93, 202, 243, 292, 351, 1120
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	8 cut(s)	123, 390, 477, 507, 606, 834, 861, 1209
MslI	CAYNNNNRTG	1 cut(s)	1224
MspA1I	CMGCKG	1 cut(s)	1112
MspI	CCGG	2 cut(s)	150, 886
MwoI	GCNNNNNNNGC	1 cut(s)	686
NdeII	GATC	5 cut(s)	211, 485, 532, 1021, 1164
NlaIII	CATG	4 cut(s)	500, 517, 818, 1200
NlaIV	GGNNCC	3 cut(s)	142, 279, 397
NspI	RCATGY	1 cut(s)	517
PagI	TCATGA	1 cut(s)	496
PciI	ACATGT	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	7 cut(s)	251, 262, 272, 319, 546, 1193, 1254
PinAI	ACCGGT	1 cut(s)	885
PkrI	GCNGC	3 cut(s)	60, 202, 679
PleI	GAGTC	2 cut(s)	421, 981
PpsI	GAGTC	2 cut(s)	421, 981
PscI	ACATGT	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	142, 279, 397
PspPI	GGNCC	2 cut(s)	779, 827
PstNI	CAGNNNCTG	1 cut(s)	917
PsuI	RGATCY	1 cut(s)	1021
RseI	CAYNNNNRTG	1 cut(s)	1224
SacI	GAGCTC	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	52
SaqAI	TTAA	8 cut(s)	123, 390, 477, 507, 606, 834, 861, 1209
SatI	GCNGC	3 cut(s)	59, 201, 678
Sau3AI	GATC	5 cut(s)	211, 485, 532, 1021, 1164
Sau96I	GGNCC	2 cut(s)	779, 827
SchI	GAGTC	2 cut(s)	421, 981
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	1246
SgrDI	CGTCGACG	1 cut(s)	52
SinI	GGWCC	1 cut(s)	827
SmiMI	CAYNNNNRTG	1 cut(s)	1224
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	5 cut(s)	62, 92, 117, 603, 711
SsiI	CCGC	3 cut(s)	36, 59, 1112
SspMI	CTAG	8 cut(s)	404, 468, 522, 570, 783, 957, 992, 1082
SstI	GAGCTC	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	1036
TaaI	ACNGT	5 cut(s)	51, 674, 913, 1099, 1141
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	5 cut(s)	53, 270, 488, 544, 578
TasI	AATT	5 cut(s)	62, 92, 117, 603, 711
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	7 cut(s)	251, 262, 272, 319, 546, 1193, 1254
Tru1I	TTAA	8 cut(s)	123, 390, 477, 507, 606, 834, 861, 1209
Tru9I	TTAA	8 cut(s)	123, 390, 477, 507, 606, 834, 861, 1209
TscAI	CASTG	4 cut(s)	679, 745, 1174, 1251
TseI	GCWGC	2 cut(s)	200, 677
TspDTI	ATGAA	6 cut(s)	372, 513, 723, 995, 1101, 1206
TspGWI	ACGGA	2 cut(s)	75, 184
TspRI	CASTG	4 cut(s)	679, 745, 1174, 1251
VpaK11BI	GGWCC	1 cut(s)	827
XagI	CCTNNNNNAGG	1 cut(s)	995
XapI	RAATTY	2 cut(s)	117, 711
XbaI	TCTAGA	1 cut(s)	403
XceI	RCATGY	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	8 cut(s)	404, 468, 522, 570, 783, 957, 992, 1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.