Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005365

Physical Location & Seq

Genomic Coordinates Reverse (-)

8986097 .. 8991380

Gene Structure 5284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGGGTCTTGCTGGTGAGCAACACCACCACACTCTCACTATCTTCCCCGCCATCACCGAAACCCCTAGCTCCGTCGCGTTTGGGCCCAAACTCGATCCATTGGGCCAAGAAAGCTCTTATTGGAGCCCTAGGCGGGGCTCTATCGCTCGGTCTTCTAGTCTCTTCTCCCGCTTCTCTAGCGTTTGAGTCTTCTTCTCCCTCCTCCATTCCAGCTCAACCTCCTCCTCCTTCAGAGTATTGTAAAGAAGACGAAGGTGACGTCATCGCCGAGTCGGCACCGGAGCCGGTGGCGACGAATGAGGGGATTGTGGAGGAGGCTTGGGAGATCGTCAATGACAGCTTTCTCGACACCGGTCGCCGGAGCTGGCTGCCGGAAAACTGGCAGATGAAGAAGGAAGATATAAGGACTAGTTCAATCAAGTCGAGATCAAAGGCTCATGATATGATCAAGCGAATGCTGGCTAGTTTGGGTGATCCTTATACGCGTTTTCTTTCGCCTGATGAGTTCTCCAAGATGGCGAGGTATGACATGAGTGGTATTGGAATAAACCTCAGGGAAGTTCCGGGTGACAATGGAGATGTGAAAGTGAAGGTACTAGGACTTTTATTGGATGGCCCTGCACATGCGGCTGGTGTGAGGCAGGGAGATGAAATACTAGCTGTTAATGGTGTGGATGTGAAAGGGAAATCAGCCTTTGAAGTGTCATCCTTGATACAAGGCCCTAATGAAACATATGTTACTATTAAGGTCAAGCATGGCAATTGTGGGCCTATTCAATCTATAGACGTTCAGAGACAACTTGTTGCTCGTACTCCTGTCTTTTATCGGTTGGAGCCAATAGAAAATGGAACCAGATCTGTTGGCTACTTGCGCCTAAAAGAGTTTAATGCATTGGCGAGAAAGGACTTGGTAATTGCTATGAAGCGACTTCAGGACATGGGTGCCTCATTTTTCATCTTGGATCTTAGAGATAATCGTGGTGGACTAGTACAGGCTGGAATAGAAATTGCAAAGCTATTTCTAAATGAAGGAGAAACGGTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009579 GO:0016787 GO:0019538 GO:0031977 GO:0043170 GO:0044238 GO:0044424 GO:0044436 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ PDZ_2 Peptidase_S41

Protein Analysis

349

Amino Acids

37.83

Weight (kDa)

6.17

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDZ	PF00595	178 - 251	3.2e-08	PDZ domain
PDZ_2	PF13180	181 - 255	9.6e-06	PDZ domain
PDZ_6	PF17820	205 - 252	1e-09	PDZ domain
Peptidase_S41	PF03572	288 - 348	3.2e-13	Peptidase family S41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46390 AT5G46390
fragaria_vesca	FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310
malus_domestica	MD05G1291100.v1.1
prunus_persica	Prupe.4G074500_v2.0.a1
pyrus_communis	pycom05g26760
rosa_chinensis	RchiOBHm_Chr5g0013001
rosa_laevigata	RLG00000031976
rosa_multiflora	Rmu_sc0003892.1_g000023 Rmu_sc0005409.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063570
rosa_rugosa	Rorug05G0006100 Rorug05G0006100
rosa_samantha	Rh5AG100600 Rh5BG097000 Rh5CG109200 Rh5DG095800
rosa_wichuraiana	Rw5G008770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
AccB1I	GGYRCC	2 cut(s)	277, 944
AccII	CGCG	2 cut(s)	79, 487
AciI	CCGC	4 cut(s)	50, 135, 171, 629
AclWI	GGATC	3 cut(s)	91, 470, 972
AcuI	CTGAAG	2 cut(s)	216, 917
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	3 cut(s)	597, 814, 993
AfiI	CCNNNNNNNGG	3 cut(s)	135, 136, 360
AflIII	ACRYGT	1 cut(s)	485
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	417, 701, 779
AhlI	ACTAGT	2 cut(s)	410, 988
AluBI	AGCT	7 cut(s)	71, 116, 215, 342, 366, 662, 1018
AluI	AGCT	7 cut(s)	71, 116, 215, 342, 366, 662, 1018
Alw26I	GTCTC	2 cut(s)	166, 790
AlwI	GGATC	3 cut(s)	91, 470, 972
AoxI	GGCC	5 cut(s)	85, 105, 616, 721, 770
ApaI	GGGCCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	370
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
AsiGI	ACCGGT	1 cut(s)	353
AspA2I	CCTAGG	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	876
AspS9I	GGNCC	6 cut(s)	85, 86, 105, 617, 722, 770
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	5 cut(s)	28, 48, 269, 485, 581
AvrII	CCTAGG	1 cut(s)	130
AxyI	CCTNAGG	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	89
BanI	GGYRCC	2 cut(s)	277, 944
BanII	GRGCYC	3 cut(s)	89, 130, 142
BbsI	GAAGAC	3 cut(s)	146, 183, 255
BbvI	GCAGC	1 cut(s)	357
BccI	CCATC	3 cut(s)	61, 511, 608
BclI	TGATCA	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	2 cut(s)	166, 790
BcuI	ACTAGT	2 cut(s)	410, 988
BfaI	CTAG	9 cut(s)	68, 131, 158, 179, 411, 465, 599, 659, 989
BfmI	CTRYAG	1 cut(s)	783
BglI	GCCNNNNNGGC	1 cut(s)	275
BglII	AGATCT	1 cut(s)	857
BisI	GCNGC	2 cut(s)	371, 630
BlnI	CCTAGG	1 cut(s)	130
BlsI	GCNGC	2 cut(s)	372, 631
Bme1390I	CCNGG	1 cut(s)	567
BmgT120I	GGNCC	6 cut(s)	85, 86, 105, 617, 722, 770
BmiI	GGNNCC	7 cut(s)	87, 127, 279, 285, 837, 853, 946
BmrFI	CCNGG	1 cut(s)	567
BoxI	GACNNNNGTC	1 cut(s)	354
BpiI	GAAGAC	3 cut(s)	146, 183, 255
BpuMI	CCSGG	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	130
BsaWI	WCCGGW	2 cut(s)	280, 353
BsaXI	ACNNNNNCTCC	1 cut(s)	1026
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 136, 360
Bse118I	RCCGGY	2 cut(s)	286, 353
Bse1I	ACTGG	1 cut(s)	386
Bse21I	CCTNAGG	1 cut(s)	554
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	3 cut(s)	619, 682, 707
BseLI	CCNNNNNNNGG	3 cut(s)	135, 136, 360
BseMII	CTCAG	1 cut(s)	568
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	4 cut(s)	193, 213, 216, 329
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	357
BsgI	GTGCAG	1 cut(s)	606
Bsh1236I	CGCG	2 cut(s)	79, 487
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	5 cut(s)	87, 107, 618, 723, 772
BshNI	GGYRCC	2 cut(s)	277, 944
BshTI	ACCGGT	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	358
BsiSI	CCGG	6 cut(s)	281, 287, 354, 361, 374, 566
BslI	CCNNNNNNNGG	3 cut(s)	135, 136, 360
BsmAI	GTCTC	2 cut(s)	166, 790
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	5 cut(s)	87, 107, 618, 723, 772
Bsp120I	GGGCCC	1 cut(s)	85
Bsp1286I	GDGCHC	3 cut(s)	89, 130, 142
Bsp143I	GATC	7 cut(s)	96, 327, 428, 447, 475, 857, 964
BspACI	CCGC	4 cut(s)	50, 135, 171, 629
BspANI	GGCC	5 cut(s)	87, 107, 618, 723, 772
BspCNI	CTCAG	1 cut(s)	567
BspFNI	CGCG	2 cut(s)	79, 487
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	7 cut(s)	87, 127, 279, 285, 837, 853, 946
BspPI	GGATC	3 cut(s)	91, 470, 972
BspT107I	GGYRCC	2 cut(s)	277, 944
BsrFI	RCCGGY	2 cut(s)	286, 353
BsrI	ACTGG	1 cut(s)	386
BssAI	RCCGGY	2 cut(s)	286, 353
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	7 cut(s)	96, 327, 428, 447, 475, 857, 964
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	1042
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	368, 462
BstDEI	CTNAG	2 cut(s)	554, 968
BstF5I	GGATG	3 cut(s)	619, 682, 707
BstFNI	CGCG	2 cut(s)	79, 487
BstHHI	GCGC	1 cut(s)	876
BstKTI	GATC	7 cut(s)	99, 330, 431, 450, 478, 860, 967
BstMAI	GTCTC	2 cut(s)	166, 790
BstMBI	GATC	7 cut(s)	96, 327, 428, 447, 475, 857, 964
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 179, 275, 629, 873
BstNSI	RCATGY	1 cut(s)	629
BstPAI	GACNNNNGTC	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	565
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	2 cut(s)	79, 487
BstV1I	GCAGC	1 cut(s)	357
BstV2I	GAAGAC	3 cut(s)	146, 183, 255
BstX2I	RGATCY	2 cut(s)	857, 964
BstYI	RGATCY	2 cut(s)	857, 964
Bsu36I	CCTNAGG	1 cut(s)	554
BsuRI	GGCC	5 cut(s)	87, 107, 618, 723, 772
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	619, 682, 707
Cac8I	GCNNGC	2 cut(s)	368, 462
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	876
Cfr10I	RCCGGY	2 cut(s)	286, 353
Cfr13I	GGNCC	6 cut(s)	85, 86, 105, 617, 722, 770
Csp6I	GTAC	3 cut(s)	596, 813, 992
CspAI	ACCGGT	1 cut(s)	353
CviAII	CATG	5 cut(s)	440, 532, 626, 758, 940
CviQI	GTAC	3 cut(s)	596, 813, 992
DdeI	CTNAG	2 cut(s)	554, 968
DpnI	GATC	7 cut(s)	98, 329, 430, 449, 477, 859, 966
DpnII	GATC	7 cut(s)	96, 327, 428, 447, 475, 857, 964
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	130
Eco24I	GRGCYC	3 cut(s)	89, 130, 142
Eco57I	CTGAAG	2 cut(s)	216, 917
Eco81I	CCTNAGG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	722
EcoT14I	CCWWGG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	895
EcoT38I	GRGCYC	3 cut(s)	89, 130, 142
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	5 cut(s)	443, 535, 629, 761, 943
FatI	CATG	5 cut(s)	439, 531, 625, 757, 939
FauI	CCCGC	3 cut(s)	57, 128, 178
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	1 cut(s)	447
Fnu4HI	GCNGC	2 cut(s)	371, 630
FokI	GGATG	3 cut(s)	626, 689, 694
FriOI	GRGCYC	3 cut(s)	89, 130, 142
Fsp4HI	GCNGC	2 cut(s)	371, 630
FspBI	CTAG	9 cut(s)	68, 131, 158, 179, 411, 465, 599, 659, 989
GlaI	GCGC	1 cut(s)	875
GluI	GCNGC	2 cut(s)	371, 630
HaeIII	GGCC	5 cut(s)	87, 107, 618, 723, 772
HapII	CCGG	6 cut(s)	281, 287, 354, 361, 374, 566
HhaI	GCGC	1 cut(s)	876
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	5 cut(s)	443, 535, 629, 761, 943
Hin6I	GCGC	1 cut(s)	874
HinP1I	GCGC	1 cut(s)	874
HinfI	GANTC	2 cut(s)	188, 272
HpaII	CCGG	6 cut(s)	281, 287, 354, 361, 374, 566
HphI	GGTGA	5 cut(s)	28, 48, 269, 485, 581
Hpy166II	GTNNAC	1 cut(s)	986
Hpy188I	TCNGA	2 cut(s)	235, 795
Hpy188III	TCNNGA	4 cut(s)	347, 426, 440, 935
Hpy8I	GTNNAC	1 cut(s)	986
Hpy99I	CGWCG	2 cut(s)	79, 298
HpyAV	CCTTC	5 cut(s)	240, 248, 388, 586, 1025
HpyCH4III	ACNGT	1 cut(s)	1042
HpyCH4IV	ACGT	2 cut(s)	261, 789
HpyCH4V	TGCA	3 cut(s)	623, 893, 1013
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 179, 275, 629, 873
HpyF3I	CTNAG	2 cut(s)	554, 968
HpySE526I	ACGT	2 cut(s)	261, 789
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	5 cut(s)	443, 535, 629, 761, 943
HspAI	GCGC	1 cut(s)	874
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	7 cut(s)	96, 327, 428, 447, 475, 857, 964
LmnI	GCTCC	5 cut(s)	76, 125, 283, 363, 835
Lsp1109I	GCAGC	1 cut(s)	357
MaeI	CTAG	9 cut(s)	68, 131, 158, 179, 411, 465, 599, 659, 989
MaeII	ACGT	2 cut(s)	261, 789
MaeIII	GTNAC	3 cut(s)	257, 569, 739
MalI	GATC	7 cut(s)	98, 329, 430, 449, 477, 859, 966
MboI	GATC	7 cut(s)	96, 327, 428, 447, 475, 857, 964
MboII	GAAGA	8 cut(s)	36, 146, 156, 183, 186, 260, 403, 410
MfeI	CAATTG	1 cut(s)	763
MflI	RGATCY	2 cut(s)	857, 964
MhlI	GDGCHC	3 cut(s)	89, 130, 142
MluCI	AATT	3 cut(s)	763, 915, 1008
MluI	ACGCGT	1 cut(s)	485
MlyI	GAGTC	2 cut(s)	197, 281
MmeI	TCCRAC	1 cut(s)	813
Mph1103I	ATGCAT	1 cut(s)	895
MseI	TTAA	3 cut(s)	666, 747, 888
MspI	CCGG	6 cut(s)	281, 287, 354, 361, 374, 566
MspR9I	CCNGG	1 cut(s)	567
MunI	CAATTG	1 cut(s)	763
Mva1269I	GAATGC	1 cut(s)	462
MvnI	CGCG	2 cut(s)	79, 487
MwoI	GCNNNNNNNGC	5 cut(s)	113, 179, 275, 629, 873
NciI	CCSGG	1 cut(s)	567
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	7 cut(s)	96, 327, 428, 447, 475, 857, 964
NlaIII	CATG	5 cut(s)	443, 535, 629, 761, 943
NlaIV	GGNNCC	7 cut(s)	87, 127, 279, 285, 837, 853, 946
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	2 cut(s)	257, 569
NsiI	ATGCAT	1 cut(s)	895
NspI	RCATGY	1 cut(s)	629
PagI	TCATGA	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 267
PctI	GAATGC	1 cut(s)	462
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	372, 631
PleI	GAGTC	2 cut(s)	196, 280
PpsI	GAGTC	2 cut(s)	196, 280
PshAI	GACNNNNGTC	1 cut(s)	354
PspN4I	GGNNCC	7 cut(s)	87, 127, 279, 285, 837, 853, 946
PspOMI	GGGCCC	1 cut(s)	85
PspPI	GGNCC	6 cut(s)	85, 86, 105, 617, 722, 770
PsuI	RGATCY	2 cut(s)	857, 964
RsaI	GTAC	3 cut(s)	597, 814, 993
RsaNI	GTAC	3 cut(s)	596, 813, 992
SaqAI	TTAA	3 cut(s)	666, 747, 888
SatI	GCNGC	2 cut(s)	371, 630
Sau3AI	GATC	7 cut(s)	96, 327, 428, 447, 475, 857, 964
Sau96I	GGNCC	6 cut(s)	85, 86, 105, 617, 722, 770
SchI	GAGTC	2 cut(s)	197, 281
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	3 cut(s)	89, 130, 142
SfcI	CTRYAG	1 cut(s)	783
SpeI	ACTAGT	2 cut(s)	410, 988
Sse9I	AATT	3 cut(s)	763, 915, 1008
SsiI	CCGC	4 cut(s)	50, 135, 171, 629
SspMI	CTAG	9 cut(s)	68, 131, 158, 179, 411, 465, 599, 659, 989
StyD4I	CCNGG	1 cut(s)	565
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	1042
TaiI	ACGT	2 cut(s)	264, 792
TaqI	TCGA	3 cut(s)	95, 348, 425
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	3 cut(s)	763, 915, 1008
TatI	WGTACW	1 cut(s)	991
TauI	GCSGC	1 cut(s)	632
Tru1I	TTAA	3 cut(s)	666, 747, 888
Tru9I	TTAA	3 cut(s)	666, 747, 888
TseFI	GTSAC	2 cut(s)	257, 569
TseI	GCWGC	1 cut(s)	370
Tsp45I	GTSAC	2 cut(s)	257, 569
TspDTI	ATGAA	6 cut(s)	404, 666, 744, 938, 946, 1044
TspGWI	ACGGA	1 cut(s)	63
XceI	RCATGY	1 cut(s)	629
XmaJI	CCTAGG	1 cut(s)	130
XspI	CTAG	9 cut(s)	68, 131, 158, 179, 411, 465, 599, 659, 989
ZraI	GACGTC	1 cut(s)	262
Zsp2I	ATGCAT	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.