Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005409.1

Orthogroup ID

OG0005365

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 508

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005409.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 430 bp

ttgggccaagaaagctcttattggagccctaggcggggctctatcgctcggtcttctagtctcttctcccgcttctctagcgcttgagtcttcttctccctcctccattccagctcaacctcctccttcttcttcctcagagtattgtaaagaagacgacggagacgtcatcgccgagtcggcaccggagccggtggcgacgaatgaggggattgtggaggaggcttgggagatcgtcaatgacagctttctcgactccggtcgccggagctggctgccggaaaattggcagatgaagaaggaagatataaggactagttcaatcaagtcgagatcaaaggctcatgatatgatcaagagaatgctggctagtctgggtgatccttatacgcgttttctttcgcctgatgaggtaattgcattcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009579 GO:0016787 GO:0019538 GO:0031977 GO:0043170 GO:0044238 GO:0044424 GO:0044436 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ PDZ_2 Peptidase_S41

Protein Analysis

142

Amino Acids

15.32

Weight (kDa)

4.7

Isoelectric Point (pI)

67.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46390 AT5G46390
fragaria_vesca	FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310
malus_domestica	MD05G1291100.v1.1
prunus_persica	Prupe.4G074500_v2.0.a1
pyrus_communis	pycom05g26760
rosa_chinensis	RchiOBHm_Chr5g0013001
rosa_laevigata	RLG00000031976
rosa_multiflora	Rmu_sc0003892.1_g000023 Rmu_sc0005409.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063570
rosa_rugosa	Rorug05G0006100 Rorug05G0006100
rosa_samantha	Rh5AG100600 Rh5BG097000 Rh5CG109200 Rh5DG095800
rosa_wichuraiana	Rw5G008770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	165
AatII	GACGTC	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	182
AccII	CGCG	1 cut(s)	392
AciI	CCGC	2 cut(s)	34, 70
AclWI	GGATC	1 cut(s)	375
AcyI	GRCGYC	1 cut(s)	166
AfeI	AGCGCT	1 cut(s)	82
AfiI	CCNNNNNNNGG	3 cut(s)	34, 35, 265
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	1 cut(s)	322
AhlI	ACTAGT	1 cut(s)	315
AluBI	AGCT	4 cut(s)	15, 114, 247, 271
AluI	AGCT	4 cut(s)	15, 114, 247, 271
Alw26I	GTCTC	2 cut(s)	65, 157
AlwI	GGATC	1 cut(s)	375
Aor51HI	AGCGCT	1 cut(s)	82
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	275
AspA2I	CCTAGG	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	390
AvrII	CCTAGG	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	2 cut(s)	29, 41
BbsI	GAAGAC	3 cut(s)	45, 82, 160
BbvI	GCAGC	1 cut(s)	262
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	65, 157
BcuI	ACTAGT	1 cut(s)	315
BfaI	CTAG	5 cut(s)	30, 57, 78, 316, 370
BfoI	RGCGCY	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	180
BisI	GCNGC	1 cut(s)	276
BlnI	CCTAGG	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	26, 184, 190
BoxI	GACNNNNGTC	1 cut(s)	259
BpiI	GAAGAC	3 cut(s)	45, 82, 160
BpuEI	CTTGAG	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	2 cut(s)	185, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 35, 265
Bse118I	RCCGGY	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	3 cut(s)	34, 35, 265
BseMII	CTCAG	1 cut(s)	151
BseRI	GAGGAG	3 cut(s)	92, 112, 234
BseXI	GCAGC	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	392
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	6
BshNI	GGYRCC	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	263
BsiSI	CCGG	5 cut(s)	186, 192, 259, 266, 279
BslI	CCNNNNNNNGG	3 cut(s)	34, 35, 265
BsmAI	GTCTC	2 cut(s)	65, 157
BsmBI	CGTCTC	1 cut(s)	157
BsmI	GAATGC	2 cut(s)	367, 420
BsnI	GGCC	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	29, 41
Bsp143I	GATC	4 cut(s)	232, 333, 352, 380
BspACI	CCGC	2 cut(s)	34, 70
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	392
BspHI	TCATGA	1 cut(s)	344
BspLI	GGNNCC	3 cut(s)	26, 184, 190
BspPI	GGATC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	4 cut(s)	232, 333, 352, 380
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	2 cut(s)	273, 367
BstDEI	CTNAG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	392
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	4 cut(s)	235, 336, 355, 383
BstMAI	GTCTC	2 cut(s)	65, 157
BstMBI	GATC	4 cut(s)	232, 333, 352, 380
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 78, 180
BstPAI	GACNNNNGTC	1 cut(s)	259
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	3 cut(s)	45, 82, 160
BsuRI	GGCC	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	155
Cac8I	GCNNGC	2 cut(s)	273, 367
CciI	TCATGA	1 cut(s)	344
CfoI	GCGC	1 cut(s)	83
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	2 cut(s)	345, 427
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	4 cut(s)	234, 335, 354, 382
DpnII	GATC	4 cut(s)	232, 333, 352, 380
DrdI	GACNNNNNNGTC	1 cut(s)	165
DseDI	GACNNNNNNGTC	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	29
Eco24I	GRGCYC	2 cut(s)	29, 41
Eco47III	AGCGCT	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	29
EcoT38I	GRGCYC	2 cut(s)	29, 41
ErhI	CCWWGG	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	2 cut(s)	348, 430
FaiI	YATR	5 cut(s)	309, 346, 351, 388, 428
FatI	CATG	2 cut(s)	344, 426
FauI	CCCGC	2 cut(s)	27, 77
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	276
FriOI	GRGCYC	2 cut(s)	29, 41
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	5 cut(s)	30, 57, 78, 316, 370
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	5 cut(s)	186, 192, 259, 266, 279
HhaI	GCGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	348, 430
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	3 cut(s)	87, 177, 255
HpaII	CCGG	5 cut(s)	186, 192, 259, 266, 279
HphI	GGTGA	1 cut(s)	390
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	4 cut(s)	252, 331, 345, 356
Hpy99I	CGWCG	2 cut(s)	162, 203
HpyAV	CCTTC	2 cut(s)	136, 293
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 78, 180
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	166
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	2 cut(s)	348, 430
HspAI	GCGC	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	232, 333, 352, 380
LmnI	GCTCC	3 cut(s)	24, 188, 268
Lsp1109I	GCAGC	1 cut(s)	262
MaeI	CTAG	5 cut(s)	30, 57, 78, 316, 370
MaeII	ACGT	1 cut(s)	166
MalI	GATC	4 cut(s)	234, 335, 354, 382
MboI	GATC	4 cut(s)	232, 333, 352, 380
MboII	GAAGA	9 cut(s)	45, 55, 82, 85, 121, 124, 165, 308, 315
MhlI	GDGCHC	2 cut(s)	29, 41
MluCI	AATT	2 cut(s)	284, 415
MluI	ACGCGT	1 cut(s)	390
MlyI	GAGTC	3 cut(s)	96, 186, 249
MnlI	CCTC	9 cut(s)	110, 113, 130, 133, 146, 200, 212, 215, 404
MslI	CAYNNNNRTG	1 cut(s)	425
MspI	CCGG	5 cut(s)	186, 192, 259, 266, 279
Mva1269I	GAATGC	2 cut(s)	367, 420
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	3 cut(s)	12, 78, 180
NdeII	GATC	4 cut(s)	232, 333, 352, 380
NlaIII	CATG	2 cut(s)	348, 430
NlaIV	GGNNCC	3 cut(s)	26, 184, 190
NmeAIII	GCCGAG	1 cut(s)	200
PagI	TCATGA	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	2 cut(s)	163, 172
PctI	GAATGC	2 cut(s)	367, 420
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	3 cut(s)	95, 185, 249
PpsI	GAGTC	3 cut(s)	95, 185, 249
PshAI	GACNNNNGTC	1 cut(s)	259
PspN4I	GGNNCC	3 cut(s)	26, 184, 190
PspPI	GGNCC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	425
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	4 cut(s)	232, 333, 352, 380
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	96, 186, 249
SduI	GDGCHC	2 cut(s)	29, 41
SetI	ASST	7 cut(s)	17, 116, 122, 169, 249, 273, 415
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
SpeI	ACTAGT	1 cut(s)	315
Sse9I	AATT	2 cut(s)	284, 415
SsiI	CCGC	2 cut(s)	34, 70
SspMI	CTAG	5 cut(s)	30, 57, 78, 316, 370
StyI	CCWWGG	1 cut(s)	29
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	2 cut(s)	253, 330
TaqII	GACCGA	1 cut(s)	39
TasI	AATT	2 cut(s)	284, 415
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	175
XmaJI	CCTAGG	1 cut(s)	29
XspI	CTAG	5 cut(s)	30, 57, 78, 316, 370
ZraI	GACGTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.