Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003892.1

Orthogroup ID

OG0005365

Physical Location & Seq

Genomic Coordinates Forward (+)

116134 .. 120516

Gene Structure 4383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003892.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

atgagggtcttgctggtgagcaacaccaccacactctcactatcttccccgccatcaccgaaacccctagctccgtcgcgtttgggcccaaactcgatccattgggccaagaaagctcttattggagccctaggcggggctctatcgctcggtcttctagtctcttctcccgcttctctagcccttgagtcttcttctccctcctccattccagctcaacctcctccttcttcttcctcagagtattgtaaagaagacgacggtgacgtcatcgccgagtcggcaccggagccggtggcgacgaatgaggggattgtggaggaggcttgggagatcgtcaatgacagctttctcgactccggtcgccggagctggctgccggaaaattggcagatgaagaaggaagatataaggactagttcaatcaagtcgagatcaaaggctcatgatatgatcaagagaatgctggctagtctgggtgatccttatacgcgttttctttcgcctgatgaggtgctaggacttttattggatggccctgcacatgcggctggtgtgaggcagggagatgaattactagctgttaatggtgtggatgtgaaagggaaatcagcctttgaagtgtcatccttgatacaaggccctaatgaaacatatgttactattaaggtcaagcatggcaattgtgggcctattcaatctatagacgttcagagacaacttgttgctcgtactcctgtcttttatcggttggagcaaatagaaaatggaaccagatctgttggctacctgcgcctaaaagagtttaatgcattggcgagaaaggacttggtaattgctatgaagcgacttcaggacatgggggcctcatttttcatcttggatcttagagataatcgtggtggactagtacaggctggaatagaaattgcaaagctatttctaaatgaaggagaaacggttatttatactgttgggaaggatcctcaataccaacaaaatattgttgcagatactgcaccattgattaaagctcctgttattgttctggtgaacaacaatactgctagtgcgagtgaaattgttgcttcagcgcttcatgataactgtaaaggtgttcttgtgggtgatcggactttcggcaagggtctgattcaatctgtttttgaacttcaagatggttctggcgtggttgtgactgttggcaagtatgtgacaccgaatcataaggacataaatggaaatggaatagagcccgattatcaaaatttccctggttggggtgacatcacacaacggctttcacagtgcagcacacttcctaggggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009579 GO:0016787 GO:0019538 GO:0031977 GO:0043170 GO:0044238 GO:0044424 GO:0044436 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ PDZ_2 Peptidase_S41

Protein Analysis

443

Amino Acids

47.69

Weight (kDa)

5.8

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46390 AT5G46390
fragaria_vesca	FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310
malus_domestica	MD05G1291100.v1.1
prunus_persica	Prupe.4G074500_v2.0.a1
pyrus_communis	pycom05g26760
rosa_chinensis	RchiOBHm_Chr5g0013001
rosa_laevigata	RLG00000031976
rosa_multiflora	Rmu_sc0003892.1_g000023 Rmu_sc0005409.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063570
rosa_rugosa	Rorug05G0006100 Rorug05G0006100
rosa_samantha	Rh5AG100600 Rh5BG097000 Rh5CG109200 Rh5DG095800
rosa_wichuraiana	Rw5G008770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	798
AccB1I	GGYRCC	1 cut(s)	283
AccII	CGCG	2 cut(s)	79, 493
AciI	CCGC	4 cut(s)	50, 135, 171, 548
AclWI	GGATC	5 cut(s)	91, 476, 891, 977, 990
AcsI	RAATTY	1 cut(s)	1267
AcuI	CTGAAG	2 cut(s)	836, 1074
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	733, 912
AfeI	AGCGCT	1 cut(s)	1095
AfiI	CCNNNNNNNGG	5 cut(s)	135, 136, 366, 1279, 1280
AflIII	ACRYGT	1 cut(s)	491
AgsI	TTSAA	6 cut(s)	423, 620, 698, 1157, 1169, 1175
AhlI	ACTAGT	2 cut(s)	416, 907
AjnI	CCWGG	1 cut(s)	1273
AluBI	AGCT	8 cut(s)	71, 116, 215, 348, 372, 581, 937, 1034
AluI	AGCT	8 cut(s)	71, 116, 215, 348, 372, 581, 937, 1034
Alw26I	GTCTC	2 cut(s)	166, 709
AlwI	GGATC	5 cut(s)	91, 476, 891, 977, 990
AlwNI	CAGNNNCTG	1 cut(s)	1016
Aor51HI	AGCGCT	1 cut(s)	1095
AoxI	GGCC	6 cut(s)	85, 105, 535, 640, 689, 864
ApaI	GGGCCC	1 cut(s)	89
ApeKI	GCWGC	2 cut(s)	376, 1311
ApoI	RAATTY	1 cut(s)	1267
AspA2I	CCTAGG	2 cut(s)	130, 1322
AspLEI	GCGC	2 cut(s)	795, 1096
AspS9I	GGNCC	7 cut(s)	85, 86, 105, 536, 641, 689, 864
AsuHPI	GGTGA	7 cut(s)	28, 48, 275, 491, 1063, 1139, 1295
AvrII	CCTAGG	2 cut(s)	130, 1322
BaeGI	GKGCMC	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	982
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	4 cut(s)	89, 130, 142, 1257
BbsI	GAAGAC	3 cut(s)	146, 183, 261
BbvI	GCAGC	2 cut(s)	363, 1323
BccI	CCATC	3 cut(s)	61, 527, 1172
BceAI	ACGGC	1 cut(s)	1313
BciT130I	CCWGG	1 cut(s)	1275
BclI	TGATCA	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	166, 709
BcuI	ACTAGT	2 cut(s)	416, 907
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	1097
BfuAI	ACCTGC	1 cut(s)	798
BglI	GCCNNNNNGGC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	776
BisI	GCNGC	3 cut(s)	377, 549, 1312
BlnI	CCTAGG	2 cut(s)	130, 1322
BlsI	GCNGC	3 cut(s)	378, 550, 1313
Bme1390I	CCNGG	1 cut(s)	1275
BmgT120I	GGNCC	7 cut(s)	85, 86, 105, 536, 641, 689, 864
BmiI	GGNNCC	7 cut(s)	87, 127, 285, 291, 772, 865, 984
BmrFI	CCNGG	1 cut(s)	1275
BoxI	GACNNNNGTC	1 cut(s)	360
BpiI	GAAGAC	3 cut(s)	146, 183, 261
BpuEI	CTTGAG	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	130, 1273, 1322
BsaWI	WCCGGW	2 cut(s)	286, 359
BsaXI	ACNNNNNCTCC	2 cut(s)	945, 975
Bsc4I	CCNNNNNNNGG	5 cut(s)	135, 136, 366, 1279, 1280
Bse118I	RCCGGY	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	1275
BseDI	CCNNGG	3 cut(s)	130, 1273, 1322
BseGI	GGATG	3 cut(s)	538, 601, 626
BseLI	CCNNNNNNNGG	5 cut(s)	135, 136, 366, 1279, 1280
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	3 cut(s)	193, 213, 335
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	363, 1323
BsgI	GTGCAG	3 cut(s)	525, 1002, 1330
Bsh1236I	CGCG	2 cut(s)	79, 493
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	6 cut(s)	87, 107, 537, 642, 691, 866
BshNI	GGYRCC	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	364
BsiSI	CCGG	5 cut(s)	287, 293, 360, 367, 380
BslI	CCNNNNNNNGG	5 cut(s)	135, 136, 366, 1279, 1280
BsmAI	GTCTC	2 cut(s)	166, 709
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	6 cut(s)	87, 107, 537, 642, 691, 866
Bsp120I	GGGCCC	1 cut(s)	85
Bsp1286I	GDGCHC	4 cut(s)	89, 130, 142, 1257
Bsp143I	GATC	9 cut(s)	96, 333, 434, 453, 481, 776, 883, 982, 1129
BspACI	CCGC	4 cut(s)	50, 135, 171, 548
BspANI	GGCC	6 cut(s)	87, 107, 537, 642, 691, 866
BspCNI	CTCAG	1 cut(s)	251
BspFNI	CGCG	2 cut(s)	79, 493
BspHI	TCATGA	2 cut(s)	445, 1099
BspLI	GGNNCC	7 cut(s)	87, 127, 285, 291, 772, 865, 984
BspMI	ACCTGC	1 cut(s)	798
BspPI	GGATC	5 cut(s)	91, 476, 891, 977, 990
BspT107I	GGYRCC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	3 cut(s)	130, 1273, 1322
BssMI	GATC	9 cut(s)	96, 333, 434, 453, 481, 776, 883, 982, 1129
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	130, 1322
Bst2UI	CCWGG	1 cut(s)	1275
Bst4CI	ACNGT	6 cut(s)	263, 961, 973, 1109, 1201, 1308
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	1016
BstC8I	GCNNGC	2 cut(s)	374, 468
BstDEI	CTNAG	2 cut(s)	238, 887
BstF5I	GGATG	3 cut(s)	538, 601, 626
BstFNI	CGCG	2 cut(s)	79, 493
BstH2I	RGCGCY	1 cut(s)	1097
BstHHI	GCGC	2 cut(s)	795, 1096
BstKTI	GATC	9 cut(s)	99, 336, 437, 456, 484, 779, 886, 985, 1132
BstMAI	GTCTC	2 cut(s)	166, 709
BstMBI	GATC	9 cut(s)	96, 333, 434, 453, 481, 776, 883, 982, 1129
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 179, 281, 548, 792, 1016
BstNI	CCWGG	1 cut(s)	1275
BstNSI	RCATGY	1 cut(s)	548
BstPAI	GACNNNNGTC	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	1273
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	2 cut(s)	79, 493
BstV1I	GCAGC	2 cut(s)	363, 1323
BstV2I	GAAGAC	3 cut(s)	146, 183, 261
BstX2I	RGATCY	3 cut(s)	776, 883, 982
BstYI	RGATCY	3 cut(s)	776, 883, 982
BsuRI	GGCC	6 cut(s)	87, 107, 537, 642, 691, 866
BtgZI	GCGATG	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	538, 601, 626
BtsIMutI	CAGTG	1 cut(s)	1313
BveI	ACCTGC	1 cut(s)	798
Cac8I	GCNNGC	2 cut(s)	374, 468
CaiI	CAGNNNCTG	1 cut(s)	1016
CciI	TCATGA	2 cut(s)	445, 1099
CfoI	GCGC	2 cut(s)	795, 1096
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	7 cut(s)	85, 86, 105, 536, 641, 689, 864
Csp6I	GTAC	2 cut(s)	732, 911
CviAII	CATG	5 cut(s)	446, 545, 677, 859, 1100
CviQI	GTAC	2 cut(s)	732, 911
DdeI	CTNAG	2 cut(s)	238, 887
DpnI	GATC	9 cut(s)	98, 335, 436, 455, 483, 778, 885, 984, 1131
DpnII	GATC	9 cut(s)	96, 333, 434, 453, 481, 776, 883, 982, 1129
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	130, 1322
Eco24I	GRGCYC	4 cut(s)	89, 130, 142, 1257
Eco47III	AGCGCT	1 cut(s)	1095
Eco57I	CTGAAG	2 cut(s)	836, 1074
EcoO109I	RGGNCCY	2 cut(s)	641, 864
EcoRII	CCWGG	1 cut(s)	1273
EcoT14I	CCWWGG	2 cut(s)	130, 1322
EcoT22I	ATGCAT	1 cut(s)	814
EcoT38I	GRGCYC	4 cut(s)	89, 130, 142, 1257
ErhI	CCWWGG	2 cut(s)	130, 1322
FaeI	CATG	5 cut(s)	449, 548, 680, 862, 1103
FalI	AAGNNNNNCTT	2 cut(s)	1104, 1136
FatI	CATG	5 cut(s)	445, 544, 676, 858, 1099
FauI	CCCGC	3 cut(s)	57, 128, 178
FauNDI	CATATG	1 cut(s)	655
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	3 cut(s)	377, 549, 1312
FokI	GGATG	3 cut(s)	545, 608, 613
FriOI	GRGCYC	4 cut(s)	89, 130, 142, 1257
Fsp4HI	GCNGC	3 cut(s)	377, 549, 1312
GlaI	GCGC	2 cut(s)	794, 1095
GluI	GCNGC	3 cut(s)	377, 549, 1312
HaeII	RGCGCY	1 cut(s)	1097
HaeIII	GGCC	6 cut(s)	87, 107, 537, 642, 691, 866
HapII	CCGG	5 cut(s)	287, 293, 360, 367, 380
HhaI	GCGC	2 cut(s)	795, 1096
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	449, 548, 680, 862, 1103
Hin6I	GCGC	2 cut(s)	793, 1094
HinP1I	GCGC	2 cut(s)	793, 1094
HinfI	GANTC	5 cut(s)	188, 278, 356, 1153, 1222
HpaII	CCGG	5 cut(s)	287, 293, 360, 367, 380
HphI	GGTGA	7 cut(s)	28, 48, 275, 491, 1063, 1139, 1295
Hpy166II	GTNNAC	2 cut(s)	905, 1054
Hpy188I	TCNGA	4 cut(s)	241, 714, 1134, 1152
Hpy188III	TCNNGA	7 cut(s)	353, 432, 446, 457, 854, 1100, 1175
Hpy8I	GTNNAC	2 cut(s)	905, 1054
Hpy99I	CGWCG	3 cut(s)	79, 263, 304
HpyAV	CCTTC	4 cut(s)	237, 394, 944, 973
HpyCH4III	ACNGT	6 cut(s)	263, 961, 973, 1109, 1201, 1308
HpyCH4IV	ACGT	2 cut(s)	267, 708
HpyCH4V	TGCA	6 cut(s)	542, 812, 932, 1010, 1019, 1311
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 179, 281, 548, 792, 1016
HpyF3I	CTNAG	2 cut(s)	238, 887
HpySE526I	ACGT	2 cut(s)	267, 708
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	449, 548, 680, 862, 1103
HspAI	GCGC	2 cut(s)	793, 1094
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	9 cut(s)	96, 333, 434, 453, 481, 776, 883, 982, 1129
LmnI	GCTCC	6 cut(s)	76, 125, 289, 369, 754, 1039
Lsp1109I	GCAGC	2 cut(s)	363, 1323
MaeII	ACGT	2 cut(s)	267, 708
MaeIII	GTNAC	5 cut(s)	263, 658, 1195, 1213, 1283
MalI	GATC	9 cut(s)	98, 335, 436, 455, 483, 778, 885, 984, 1131
MboI	GATC	9 cut(s)	96, 333, 434, 453, 481, 776, 883, 982, 1129
MfeI	CAATTG	1 cut(s)	682
MflI	RGATCY	3 cut(s)	776, 883, 982
MhlI	GDGCHC	4 cut(s)	89, 130, 142, 1257
MluCI	AATT	7 cut(s)	385, 572, 682, 834, 927, 1080, 1267
MluI	ACGCGT	1 cut(s)	491
MlyI	GAGTC	3 cut(s)	197, 287, 350
MmeI	TCCRAC	1 cut(s)	732
Mph1103I	ATGCAT	1 cut(s)	814
MseI	TTAA	4 cut(s)	585, 666, 807, 1029
MspI	CCGG	5 cut(s)	287, 293, 360, 367, 380
MspR9I	CCNGG	1 cut(s)	1275
MunI	CAATTG	1 cut(s)	682
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	1275
MvnI	CGCG	2 cut(s)	79, 493
MwoI	GCNNNNNNNGC	6 cut(s)	113, 179, 281, 548, 792, 1016
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	9 cut(s)	96, 333, 434, 453, 481, 776, 883, 982, 1129
NlaIII	CATG	5 cut(s)	449, 548, 680, 862, 1103
NlaIV	GGNNCC	7 cut(s)	87, 127, 285, 291, 772, 865, 984
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	4 cut(s)	263, 1195, 1213, 1283
NsiI	ATGCAT	1 cut(s)	814
NspI	RCATGY	1 cut(s)	548
PagI	TCATGA	2 cut(s)	445, 1099
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 273
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	1153, 1222
PkrI	GCNGC	3 cut(s)	378, 550, 1313
PleI	GAGTC	3 cut(s)	196, 286, 350
PpsI	GAGTC	3 cut(s)	196, 286, 350
PshAI	GACNNNNGTC	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	1273
PspGI	CCWGG	1 cut(s)	1273
PspN4I	GGNNCC	7 cut(s)	87, 127, 285, 291, 772, 865, 984
PspOMI	GGGCCC	1 cut(s)	85
PspPI	GGNCC	7 cut(s)	85, 86, 105, 536, 641, 689, 864
PstNI	CAGNNNCTG	1 cut(s)	1016
PsuI	RGATCY	3 cut(s)	776, 883, 982
RsaI	GTAC	2 cut(s)	733, 912
RsaNI	GTAC	2 cut(s)	732, 911
SaqAI	TTAA	4 cut(s)	585, 666, 807, 1029
SatI	GCNGC	3 cut(s)	377, 549, 1312
Sau3AI	GATC	9 cut(s)	96, 333, 434, 453, 481, 776, 883, 982, 1129
Sau96I	GGNCC	7 cut(s)	85, 86, 105, 536, 641, 689, 864
SchI	GAGTC	3 cut(s)	197, 287, 350
ScrFI	CCNGG	1 cut(s)	1275
SduI	GDGCHC	4 cut(s)	89, 130, 142, 1257
SfcI	CTRYAG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SpeI	ACTAGT	2 cut(s)	416, 907
Sse9I	AATT	7 cut(s)	385, 572, 682, 834, 927, 1080, 1267
SsiI	CCGC	4 cut(s)	50, 135, 171, 548
SspI	AATATT	1 cut(s)	1003
StyD4I	CCNGG	1 cut(s)	1273
StyI	CCWWGG	2 cut(s)	130, 1322
TaaI	ACNGT	6 cut(s)	263, 961, 973, 1109, 1201, 1308
TaiI	ACGT	2 cut(s)	270, 711
TaqI	TCGA	3 cut(s)	95, 354, 431
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	7 cut(s)	385, 572, 682, 834, 927, 1080, 1267
TatI	WGTACW	1 cut(s)	910
TauI	GCSGC	1 cut(s)	551
TfiI	GAWTC	2 cut(s)	1153, 1222
Tru1I	TTAA	4 cut(s)	585, 666, 807, 1029
Tru9I	TTAA	4 cut(s)	585, 666, 807, 1029
TscAI	CASTG	1 cut(s)	1313
TseFI	GTSAC	4 cut(s)	263, 1195, 1213, 1283
TseI	GCWGC	2 cut(s)	376, 1311
Tsp45I	GTSAC	4 cut(s)	263, 1195, 1213, 1283
TspDTI	ATGAA	7 cut(s)	410, 585, 663, 857, 865, 963, 1088
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	1313
XapI	RAATTY	1 cut(s)	1267
XceI	RCATGY	1 cut(s)	548
XmaJI	CCTAGG	2 cut(s)	130, 1322
ZraI	GACGTC	1 cut(s)	268
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.