Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005365

Physical Location & Seq

Genomic Coordinates Reverse (-)

8786798 .. 8792147

Gene Structure 5350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG097000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAGGGTCTTGCTGGTGAGCAACACCACCACACTCTCACTATCTTCCCCGCCATCACCGAAACCCTTAGCTCCGTCGCGTTTGGGCCCAAACTCGATCCATTGGGCCAAGAAAGCTCTTATTGGAGCCCTAGGCGGGGCTCTATCGCTCGGTCTTCTAGTCTCTTCTCCCGCTTCTCTAGCGTTTGAGTCTTCTTCTCCTCCCTCCTCCATTCCAGCTCAACCTCCTTCTTCTTCAGAGTATTGTAAAGAAGACGAAGGTGACGTCATCGCGGAGTCGGCACCAGAGCCGGTGGCGACGAATGAGGGGATTGTGGAGGAGGCTTGGGAGATCGTCAATGACAGCTTTCTCGACACCGGTCGCCGGAGCTGGCTGCCGGAAAATTGGCAGATGAAGAAGGAAGATATAAGGACTAGTTCAATCAAGACGAGATCAAAGGCTCATGATATGATCAAGCGAATGCTGGCTAGTTTGGGTGATCCTTATACGCGTTTTCTTTCGCCTGATGAGTTCTCCAAGATGGCGAGGTATGACATGAGTGGTATTGGAATAAACCTCAGGGAAGTTCCAGGTGACAATGGAGATGTGAAAGTGAAGGTACTAGGACTTTTATTGGATGGCCCTGCACATGCGGCTGGTGTGAGGCAGGGAGATGAAATACTAGCTGTTAATGGTGTGGATGTGAAAGGGAAATCAGCCTTTGAAGTATCATCCTTGATACAAGGCCCTAATGAAACATTTGTTACTATTAAGGTCAAGCATGGCAATTGTGGGCCTATTCAATCTATAGACGTTCAGAGACAACTTGTTGCTCGTACTCCTGTCTTTTATCGGTTGGAGCAAATAGAAAATGGAACCAGATCTGTTGGCTACCTGCGCCTAAAAGAGTTTAATGCATTGGCTAGAAAGGACTTGGTAATTGCTATGAAGCGACTTCAGGACATGGGTGCCTCATTTTTCATCTTGGATCTTAGAGATAATCGTGGTGGACTAGTACAGGCTGGAATAGAAATTGCAAAGCTATTTCTAAATGAAGGAGAAACGGTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009579 GO:0016787 GO:0019538 GO:0031977 GO:0043170 GO:0044238 GO:0044424 GO:0044436 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ PDZ_2 Peptidase_S41

Protein Analysis

350

Amino Acids

37.94

Weight (kDa)

6.17

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDZ	PF00595	179 - 252	5.1e-08	PDZ domain
PDZ_6	PF17820	206 - 253	1.9e-09	PDZ domain
Peptidase_S41	PF03572	289 - 349	3.3e-13	Peptidase family S41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46390 AT5G46390
fragaria_vesca	FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310 FvH4_3g06310
malus_domestica	MD05G1291100.v1.1
prunus_persica	Prupe.4G074500_v2.0.a1
pyrus_communis	pycom05g26760
rosa_chinensis	RchiOBHm_Chr5g0013001
rosa_laevigata	RLG00000031976
rosa_multiflora	Rmu_sc0003892.1_g000023 Rmu_sc0005409.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063570
rosa_rugosa	Rorug05G0006100 Rorug05G0006100
rosa_samantha	Rh5AG100600 Rh5BG097000 Rh5CG109200 Rh5DG095800
rosa_wichuraiana	Rw5G008770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
Acc36I	ACCTGC	1 cut(s)	882
AccB1I	GGYRCC	2 cut(s)	280, 947
AccII	CGCG	3 cut(s)	79, 272, 490
AciI	CCGC	5 cut(s)	50, 135, 171, 272, 632
AclWI	GGATC	3 cut(s)	91, 473, 975
AcuI	CTGAAG	2 cut(s)	219, 920
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	3 cut(s)	600, 817, 996
AfiI	CCNNNNNNNGG	3 cut(s)	135, 136, 363
AflIII	ACRYGT	1 cut(s)	488
AgeI	ACCGGT	1 cut(s)	356
AgsI	TTSAA	3 cut(s)	420, 704, 782
AhlI	ACTAGT	2 cut(s)	413, 991
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	7 cut(s)	71, 116, 218, 345, 369, 665, 1021
AluI	AGCT	7 cut(s)	71, 116, 218, 345, 369, 665, 1021
Alw26I	GTCTC	2 cut(s)	166, 793
AlwI	GGATC	3 cut(s)	91, 473, 975
AoxI	GGCC	5 cut(s)	85, 105, 619, 724, 773
ApaI	GGGCCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	373
ArsI	GACNNNNNNTTYG	2 cut(s)	249, 281
AsiGI	ACCGGT	1 cut(s)	356
AspA2I	CCTAGG	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	879
AspS9I	GGNCC	6 cut(s)	85, 86, 105, 620, 725, 773
AsuHPI	GGTGA	5 cut(s)	28, 48, 272, 488, 584
AvrII	CCTAGG	1 cut(s)	130
AxyI	CCTNAGG	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	89
BanI	GGYRCC	2 cut(s)	280, 947
BanII	GRGCYC	3 cut(s)	89, 130, 142
BbsI	GAAGAC	3 cut(s)	146, 183, 258
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	3 cut(s)	61, 514, 611
BciT130I	CCWGG	1 cut(s)	570
BclI	TGATCA	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	166, 793
BcuI	ACTAGT	2 cut(s)	413, 991
BfaI	CTAG	9 cut(s)	131, 158, 179, 414, 468, 602, 662, 903, 992
BfmI	CTRYAG	1 cut(s)	786
BfuAI	ACCTGC	1 cut(s)	882
BglII	AGATCT	1 cut(s)	860
BisI	GCNGC	2 cut(s)	374, 633
BlnI	CCTAGG	1 cut(s)	130
BlsI	GCNGC	2 cut(s)	375, 634
Bme1390I	CCNGG	1 cut(s)	570
BmgT120I	GGNCC	6 cut(s)	85, 86, 105, 620, 725, 773
BmiI	GGNNCC	5 cut(s)	87, 127, 282, 856, 949
BmrFI	CCNGG	1 cut(s)	570
BoxI	GACNNNNGTC	1 cut(s)	357
BpiI	GAAGAC	3 cut(s)	146, 183, 258
Bpu10I	CCTNAGC	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	130
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	1 cut(s)	1029
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 136, 363
Bse118I	RCCGGY	2 cut(s)	289, 356
Bse21I	CCTNAGG	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	3 cut(s)	622, 685, 710
BseLI	CCNNNNNNNGG	3 cut(s)	135, 136, 363
BseMII	CTCAG	1 cut(s)	571
BseRI	GAGGAG	3 cut(s)	189, 196, 332
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	3 cut(s)	79, 272, 490
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	5 cut(s)	87, 107, 621, 726, 775
BshNI	GGYRCC	2 cut(s)	280, 947
BshTI	ACCGGT	1 cut(s)	356
BsiEI	CGRYCG	1 cut(s)	361
BsiSI	CCGG	4 cut(s)	290, 357, 364, 377
BslI	CCNNNNNNNGG	3 cut(s)	135, 136, 363
BsmAI	GTCTC	2 cut(s)	166, 793
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	5 cut(s)	87, 107, 621, 726, 775
Bsp120I	GGGCCC	1 cut(s)	85
Bsp1286I	GDGCHC	3 cut(s)	89, 130, 142
Bsp143I	GATC	7 cut(s)	96, 330, 431, 450, 478, 860, 967
BspACI	CCGC	5 cut(s)	50, 135, 171, 272, 632
BspANI	GGCC	5 cut(s)	87, 107, 621, 726, 775
BspCNI	CTCAG	1 cut(s)	570
BspFNI	CGCG	3 cut(s)	79, 272, 490
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	5 cut(s)	87, 127, 282, 856, 949
BspMI	ACCTGC	1 cut(s)	882
BspPI	GGATC	3 cut(s)	91, 473, 975
BspT107I	GGYRCC	2 cut(s)	280, 947
BsrFI	RCCGGY	2 cut(s)	289, 356
BssAI	RCCGGY	2 cut(s)	289, 356
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	7 cut(s)	96, 330, 431, 450, 478, 860, 967
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	1 cut(s)	1045
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	371, 465
BstDEI	CTNAG	3 cut(s)	67, 557, 971
BstF5I	GGATG	3 cut(s)	622, 685, 710
BstFNI	CGCG	3 cut(s)	79, 272, 490
BstHHI	GCGC	1 cut(s)	879
BstKTI	GATC	7 cut(s)	99, 333, 434, 453, 481, 863, 970
BstMAI	GTCTC	2 cut(s)	166, 793
BstMBI	GATC	7 cut(s)	96, 330, 431, 450, 478, 860, 967
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 179, 278, 632, 876
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	632
BstPAI	GACNNNNGTC	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	568
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	3 cut(s)	79, 272, 490
BstV1I	GCAGC	1 cut(s)	360
BstV2I	GAAGAC	3 cut(s)	146, 183, 258
BstX2I	RGATCY	2 cut(s)	860, 967
BstYI	RGATCY	2 cut(s)	860, 967
Bsu36I	CCTNAGG	1 cut(s)	557
BsuRI	GGCC	5 cut(s)	87, 107, 621, 726, 775
BtgZI	GCGATG	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	622, 685, 710
BveI	ACCTGC	1 cut(s)	882
Cac8I	GCNNGC	2 cut(s)	371, 465
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	879
Cfr10I	RCCGGY	2 cut(s)	289, 356
Cfr13I	GGNCC	6 cut(s)	85, 86, 105, 620, 725, 773
Csp6I	GTAC	3 cut(s)	599, 816, 995
CspAI	ACCGGT	1 cut(s)	356
CviAII	CATG	5 cut(s)	443, 535, 629, 761, 943
CviQI	GTAC	3 cut(s)	599, 816, 995
DdeI	CTNAG	3 cut(s)	67, 557, 971
DpnI	GATC	7 cut(s)	98, 332, 433, 452, 480, 862, 969
DpnII	GATC	7 cut(s)	96, 330, 431, 450, 478, 860, 967
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	130
Eco24I	GRGCYC	3 cut(s)	89, 130, 142
Eco57I	CTGAAG	2 cut(s)	219, 920
Eco81I	CCTNAGG	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	898
EcoT38I	GRGCYC	3 cut(s)	89, 130, 142
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	5 cut(s)	446, 538, 632, 764, 946
FatI	CATG	5 cut(s)	442, 534, 628, 760, 942
FauI	CCCGC	3 cut(s)	57, 128, 178
FbaI	TGATCA	1 cut(s)	450
Fnu4HI	GCNGC	2 cut(s)	374, 633
FokI	GGATG	3 cut(s)	629, 692, 697
FriOI	GRGCYC	3 cut(s)	89, 130, 142
Fsp4HI	GCNGC	2 cut(s)	374, 633
FspBI	CTAG	9 cut(s)	131, 158, 179, 414, 468, 602, 662, 903, 992
GlaI	GCGC	1 cut(s)	878
GluI	GCNGC	2 cut(s)	374, 633
HaeIII	GGCC	5 cut(s)	87, 107, 621, 726, 775
HapII	CCGG	4 cut(s)	290, 357, 364, 377
HhaI	GCGC	1 cut(s)	879
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	5 cut(s)	446, 538, 632, 764, 946
Hin6I	GCGC	1 cut(s)	877
HinP1I	GCGC	1 cut(s)	877
HinfI	GANTC	2 cut(s)	188, 275
HpaII	CCGG	4 cut(s)	290, 357, 364, 377
HphI	GGTGA	5 cut(s)	28, 48, 272, 488, 584
Hpy166II	GTNNAC	1 cut(s)	989
Hpy188I	TCNGA	2 cut(s)	238, 798
Hpy188III	TCNNGA	4 cut(s)	350, 424, 443, 938
Hpy8I	GTNNAC	1 cut(s)	989
Hpy99I	CGWCG	2 cut(s)	79, 301
HpyAV	CCTTC	5 cut(s)	237, 251, 391, 589, 1028
HpyCH4III	ACNGT	1 cut(s)	1045
HpyCH4IV	ACGT	2 cut(s)	264, 792
HpyCH4V	TGCA	3 cut(s)	626, 896, 1016
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 179, 278, 632, 876
HpyF3I	CTNAG	3 cut(s)	67, 557, 971
HpySE526I	ACGT	2 cut(s)	264, 792
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	5 cut(s)	446, 538, 632, 764, 946
HspAI	GCGC	1 cut(s)	877
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	7 cut(s)	96, 330, 431, 450, 478, 860, 967
LmnI	GCTCC	4 cut(s)	76, 125, 366, 838
Lsp1109I	GCAGC	1 cut(s)	360
MaeI	CTAG	9 cut(s)	131, 158, 179, 414, 468, 602, 662, 903, 992
MaeII	ACGT	2 cut(s)	264, 792
MaeIII	GTNAC	3 cut(s)	260, 572, 742
MalI	GATC	7 cut(s)	98, 332, 433, 452, 480, 862, 969
MboI	GATC	7 cut(s)	96, 330, 431, 450, 478, 860, 967
MfeI	CAATTG	1 cut(s)	766
MflI	RGATCY	2 cut(s)	860, 967
MhlI	GDGCHC	3 cut(s)	89, 130, 142
MluCI	AATT	4 cut(s)	382, 766, 918, 1011
MluI	ACGCGT	1 cut(s)	488
MlyI	GAGTC	2 cut(s)	197, 284
MmeI	TCCRAC	1 cut(s)	816
Mph1103I	ATGCAT	1 cut(s)	898
MseI	TTAA	3 cut(s)	669, 750, 891
MspI	CCGG	4 cut(s)	290, 357, 364, 377
MspR9I	CCNGG	1 cut(s)	570
MunI	CAATTG	1 cut(s)	766
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	3 cut(s)	79, 272, 490
MwoI	GCNNNNNNNGC	5 cut(s)	113, 179, 278, 632, 876
NdeII	GATC	7 cut(s)	96, 330, 431, 450, 478, 860, 967
NlaIII	CATG	5 cut(s)	446, 538, 632, 764, 946
NlaIV	GGNNCC	5 cut(s)	87, 127, 282, 856, 949
NmuCI	GTSAC	2 cut(s)	260, 572
NsiI	ATGCAT	1 cut(s)	898
NspI	RCATGY	1 cut(s)	632
PagI	TCATGA	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	1 cut(s)	465
PinAI	ACCGGT	1 cut(s)	356
PkrI	GCNGC	2 cut(s)	375, 634
PleI	GAGTC	2 cut(s)	196, 283
PpsI	GAGTC	2 cut(s)	196, 283
PshAI	GACNNNNGTC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	5 cut(s)	87, 127, 282, 856, 949
PspOMI	GGGCCC	1 cut(s)	85
PspPI	GGNCC	6 cut(s)	85, 86, 105, 620, 725, 773
PsuI	RGATCY	2 cut(s)	860, 967
RsaI	GTAC	3 cut(s)	600, 817, 996
RsaNI	GTAC	3 cut(s)	599, 816, 995
SaqAI	TTAA	3 cut(s)	669, 750, 891
SatI	GCNGC	2 cut(s)	374, 633
Sau3AI	GATC	7 cut(s)	96, 330, 431, 450, 478, 860, 967
Sau96I	GGNCC	6 cut(s)	85, 86, 105, 620, 725, 773
SchI	GAGTC	2 cut(s)	197, 284
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	3 cut(s)	89, 130, 142
SfcI	CTRYAG	1 cut(s)	786
SpeI	ACTAGT	2 cut(s)	413, 991
Sse9I	AATT	4 cut(s)	382, 766, 918, 1011
SsiI	CCGC	5 cut(s)	50, 135, 171, 272, 632
SspMI	CTAG	9 cut(s)	131, 158, 179, 414, 468, 602, 662, 903, 992
StyD4I	CCNGG	1 cut(s)	568
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	1045
TaiI	ACGT	2 cut(s)	267, 795
TaqI	TCGA	2 cut(s)	95, 351
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	4 cut(s)	382, 766, 918, 1011
TatI	WGTACW	1 cut(s)	994
TauI	GCSGC	1 cut(s)	635
Tru1I	TTAA	3 cut(s)	669, 750, 891
Tru9I	TTAA	3 cut(s)	669, 750, 891
TseFI	GTSAC	2 cut(s)	260, 572
TseI	GCWGC	1 cut(s)	373
Tsp45I	GTSAC	2 cut(s)	260, 572
TspDTI	ATGAA	6 cut(s)	407, 669, 747, 941, 949, 1047
TspGWI	ACGGA	1 cut(s)	63
XceI	RCATGY	1 cut(s)	632
XmaJI	CCTAGG	1 cut(s)	130
XspI	CTAG	9 cut(s)	131, 158, 179, 414, 468, 602, 662, 903, 992
ZraI	GACGTC	1 cut(s)	265
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.