RLG00000031976

tail specific protease

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
9943450 .. 9947726
4277 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031976

Sequence Viewer

Length: 1416 bp
ATGAGGGTCTTGCTGGTGAGCAACACCACCACACTCTCACTATCTTCCCCGCCATCACCGAAACCCGTAGCTCCGTCGCGTTTGGGCCCAAACTCGATCCATTGGGCCAAGAAAGCTCTTATTGGAGCCCTAGGCGGGGCTCTATCGCTCGGTCTTCTAGTCTCTTCTCCCGCTTCTCTAGCGTTTGAGTCTTCTGCTCCCTCCTCCATTCCATCATCTCAACCTCCTTCTTCTTCAGAGTATTGTAAAGAAGATGAAGGTGACGTCATCGCCGAGTCGGCACCGGAGCCGGTGGCGACGAATGAGGGGATTGTGGAGGAGGCTTGGGAGATCGTCAATGACAGCTTTCTCGACACCGGTCGCCGGAGCTGGCTGCCGGAAAATTGGCAGATGAAGAAGGAAGATATAAGGACGAGTTCAATCAAGACGAGATCAAAGGCTCATGATATGATCAAGAGAATGCTGGCTAGTTTGGGGGATCCTTATACGCGTTTTCTTTCGCCTGATGAGTTCTCCAAGATGGCGAGGTATGACATGAGTGGTATTGGAATAAACCTCAGGGAAGTTGCGGGTGACAATGGAGATGTGAAAGTGCAGGTACTAGGACTTTTATTGGATGGCCCTGCACATGCGGCTGGTGTGAGGCAGGGAGATGAAATACTAGCTGTTAATGGTGTGGATGTGAAAGGGAAATCAGCCTTTGAAGTATCATCCTTGATACAAGGCCCTAATGAAACATTTGTTACTATTAAGGTCAAGCATGGCAGTTGTGGGCCTATTCAATCTATAGATGTTCAGAGACAACTTGTTGCTCGTACTCCTGTCTTTTATCGGTTGGAGCAAATAGAAAATGGAACCAGATCTGTTGGCTACCTGCGCCTAAAAGAGTTTAATGCATTGGCTAGAAAGGACTTGGTAATTGCTATGAAGCGACTTCAGGACATGGGTGCCTCAGTTTTCATCTTGGATCTTAGAGATAATCGTGGTGGACTAGTACAGGCTGGAATAGAAATTGCAAAGCTATTTCTAAATGAAGGAGAAACGGTTATTTATACTGTTGGGAAGGATCCTCAATACCAACAAAATATTGTTGCAGATACTGCACCATTGATTAAAGCTCCTGTTATTGTTCTGGTGAACAACAATACTGCTAGTGCGAGTGAAATTGTTGCTTCAGCTCTTCATGATAACTGTAAAGGTGTTCTTGTGGGTGATCGGACTTTCGGCAAGGGTCTGATTCAATCTGTTTTTGAACTTCAAGATGGTTCTGGCGTGGTTGTGACTGTTGGCAAGTATGTGACACCGAATCATAAGGACATAAATGGAAATGGAATAGAGCCCGATTATCGAAATTTCCCTGGTTGGGGTGACATCACACAACGGCTTTCACAGTGCAGCACGCTTCCTAGGGGATAA

Protein Analysis

472

Amino Acids

50.75

Weight (kDa)

5.97

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDZ PF00595 179 - 252 5.2e-08 PDZ domain
PDZ_6 PF17820 206 - 253 2.8e-09 PDZ domain
Peptidase_S41 PF03572 289 - 449 1.4e-49 Peptidase family S41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
Acc36I ACCTGC 2 cut(s) 586, 882
AccB1I GGYRCC 2 cut(s) 280, 947
AccII CGCG 2 cut(s) 79, 490
AciI CCGC 5 cut(s) 50, 135, 171, 569, 632
AclWI GGATC 6 cut(s) 91, 473, 486, 975, 1061, 1074
AcsI RAATTY 1 cut(s) 1351
AcuI CTGAAG 3 cut(s) 219, 920, 1158
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 3 cut(s) 600, 817, 996
AfiI CCNNNNNNNGG 5 cut(s) 135, 136, 363, 1363, 1364
AflIII ACRYGT 1 cut(s) 488
AgeI ACCGGT 1 cut(s) 356
AgsI TTSAA 6 cut(s) 420, 704, 782, 1241, 1253, 1259
AhlI ACTAGT 1 cut(s) 991
AjnI CCWGG 1 cut(s) 1357
AluBI AGCT 8 cut(s) 71, 116, 345, 369, 665, 1021, 1118, 1178
AluI AGCT 8 cut(s) 71, 116, 345, 369, 665, 1021, 1118, 1178
Alw26I GTCTC 2 cut(s) 166, 793
AlwI GGATC 6 cut(s) 91, 473, 486, 975, 1061, 1074
AlwNI CAGNNNCTG 1 cut(s) 1100
AoxI GGCC 5 cut(s) 85, 105, 619, 724, 773
ApaI GGGCCC 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 373, 1395
ApoI RAATTY 1 cut(s) 1351
AsiGI ACCGGT 1 cut(s) 356
AspA2I CCTAGG 2 cut(s) 130, 1406
AspLEI GCGC 1 cut(s) 879
AspS9I GGNCC 6 cut(s) 85, 86, 105, 620, 725, 773
AsuHPI GGTGA 7 cut(s) 28, 48, 272, 584, 1147, 1223, 1379
AvrII CCTAGG 2 cut(s) 130, 1406
AxyI CCTNAGG 1 cut(s) 557
BaeGI GKGCMC 1 cut(s) 89
BamHI GGATCC 2 cut(s) 478, 1066
BanI GGYRCC 2 cut(s) 280, 947
BanII GRGCYC 4 cut(s) 89, 130, 142, 1341
BbsI GAAGAC 2 cut(s) 146, 183
BbvI GCAGC 2 cut(s) 360, 1407
BccI CCATC 5 cut(s) 61, 220, 514, 611, 1256
BceAI ACGGC 1 cut(s) 1397
BciT130I CCWGG 1 cut(s) 1359
BclI TGATCA 1 cut(s) 450
BcoDI GTCTC 2 cut(s) 166, 793
BcuI ACTAGT 1 cut(s) 991
BfmI CTRYAG 1 cut(s) 786
BfuAI ACCTGC 2 cut(s) 586, 882
BglI GCCNNNNNGGC 1 cut(s) 278
BglII AGATCT 1 cut(s) 860
BisI GCNGC 3 cut(s) 374, 633, 1396
BlnI CCTAGG 2 cut(s) 130, 1406
BlsI GCNGC 3 cut(s) 375, 634, 1397
Bme1390I CCNGG 1 cut(s) 1359
BmgT120I GGNCC 6 cut(s) 85, 86, 105, 620, 725, 773
BmiI GGNNCC 8 cut(s) 87, 127, 282, 288, 480, 856, 949, 1068
BmrFI CCNGG 1 cut(s) 1359
BoxI GACNNNNGTC 1 cut(s) 357
BpiI GAAGAC 2 cut(s) 146, 183
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 3 cut(s) 130, 1357, 1406
BsaWI WCCGGW 2 cut(s) 283, 356
BsaXI ACNNNNNCTCC 2 cut(s) 1029, 1059
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 136, 363, 1363, 1364
Bse118I RCCGGY 2 cut(s) 289, 356
Bse21I CCTNAGG 1 cut(s) 557
BseBI CCWGG 1 cut(s) 1359
BseDI CCNNGG 3 cut(s) 130, 1357, 1406
BseGI GGATG 3 cut(s) 622, 685, 710
BseLI CCNNNNNNNGG 5 cut(s) 135, 136, 363, 1363, 1364
BseMII CTCAG 2 cut(s) 571, 966
BseRI GAGGAG 2 cut(s) 193, 332
BseSI GKGCMC 1 cut(s) 89
BseXI GCAGC 2 cut(s) 360, 1407
BsgI GTGCAG 4 cut(s) 609, 614, 1086, 1414
Bsh1236I CGCG 2 cut(s) 79, 490
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 5 cut(s) 87, 107, 621, 726, 775
BshNI GGYRCC 2 cut(s) 280, 947
BshTI ACCGGT 1 cut(s) 356
BsiEI CGRYCG 1 cut(s) 361
BsiSI CCGG 5 cut(s) 284, 290, 357, 364, 377
BslI CCNNNNNNNGG 5 cut(s) 135, 136, 363, 1363, 1364
BsmAI GTCTC 2 cut(s) 166, 793
BsmI GAATGC 1 cut(s) 465
BsnI GGCC 5 cut(s) 87, 107, 621, 726, 775
Bsp120I GGGCCC 1 cut(s) 85
Bsp1286I GDGCHC 4 cut(s) 89, 130, 142, 1341
Bsp143I GATC 9 cut(s) 96, 330, 431, 450, 478, 860, 967, 1066, 1213
BspACI CCGC 5 cut(s) 50, 135, 171, 569, 632
BspANI GGCC 5 cut(s) 87, 107, 621, 726, 775
BspCNI CTCAG 2 cut(s) 570, 965
BspFNI CGCG 2 cut(s) 79, 490
BspHI TCATGA 2 cut(s) 442, 1183
BspLI GGNNCC 8 cut(s) 87, 127, 282, 288, 480, 856, 949, 1068
BspMI ACCTGC 2 cut(s) 586, 882
BspPI GGATC 6 cut(s) 91, 473, 486, 975, 1061, 1074
BspQI GCTCTTC 1 cut(s) 1185
BspT107I GGYRCC 2 cut(s) 280, 947
BsrFI RCCGGY 2 cut(s) 289, 356
BssAI RCCGGY 2 cut(s) 289, 356
BssECI CCNNGG 3 cut(s) 130, 1357, 1406
BssMI GATC 9 cut(s) 96, 330, 431, 450, 478, 860, 967, 1066, 1213
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 2 cut(s) 130, 1406
Bst2UI CCWGG 1 cut(s) 1359
Bst4CI ACNGT 5 cut(s) 1045, 1057, 1193, 1285, 1392
Bst6I CTCTTC 2 cut(s) 169, 1185
BstACI GRCGYC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 1100
BstC8I GCNNGC 3 cut(s) 371, 465, 1400
BstDEI CTNAG 3 cut(s) 557, 952, 971
BstF5I GGATG 3 cut(s) 622, 685, 710
BstFNI CGCG 2 cut(s) 79, 490
BstHHI GCGC 1 cut(s) 879
BstKTI GATC 9 cut(s) 99, 333, 434, 453, 481, 863, 970, 1069, 1216
BstMAI GTCTC 2 cut(s) 166, 793
BstMBI GATC 9 cut(s) 96, 330, 431, 450, 478, 860, 967, 1066, 1213
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 6 cut(s) 113, 179, 278, 632, 876, 1100
BstNI CCWGG 1 cut(s) 1359
BstNSI RCATGY 1 cut(s) 632
BstPAI GACNNNNGTC 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 1357
BstSFI CTRYAG 1 cut(s) 786
BstSLI GKGCMC 1 cut(s) 89
BstUI CGCG 2 cut(s) 79, 490
BstV1I GCAGC 2 cut(s) 360, 1407
BstV2I GAAGAC 2 cut(s) 146, 183
BstX2I RGATCY 4 cut(s) 478, 860, 967, 1066
BstYI RGATCY 4 cut(s) 478, 860, 967, 1066
Bsu36I CCTNAGG 1 cut(s) 557
BsuRI GGCC 5 cut(s) 87, 107, 621, 726, 775
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 3 cut(s) 622, 685, 710
BtsIMutI CAGTG 1 cut(s) 1397
BveI ACCTGC 2 cut(s) 586, 882
Cac8I GCNNGC 3 cut(s) 371, 465, 1400
CaiI CAGNNNCTG 1 cut(s) 1100
CciI TCATGA 2 cut(s) 442, 1183
CfoI GCGC 1 cut(s) 879
Cfr10I RCCGGY 2 cut(s) 289, 356
Cfr13I GGNCC 6 cut(s) 85, 86, 105, 620, 725, 773
Csp6I GTAC 3 cut(s) 599, 816, 995
CspAI ACCGGT 1 cut(s) 356
CviAII CATG 6 cut(s) 443, 535, 629, 761, 943, 1184
CviQI GTAC 3 cut(s) 599, 816, 995
DdeI CTNAG 3 cut(s) 557, 952, 971
DpnI GATC 9 cut(s) 98, 332, 433, 452, 480, 862, 969, 1068, 1215
DpnII GATC 9 cut(s) 96, 330, 431, 450, 478, 860, 967, 1066, 1213
Eam1104I CTCTTC 2 cut(s) 169, 1185
EarI CTCTTC 2 cut(s) 169, 1185
Eco130I CCWWGG 2 cut(s) 130, 1406
Eco24I GRGCYC 4 cut(s) 89, 130, 142, 1341
Eco57I CTGAAG 3 cut(s) 219, 920, 1158
Eco81I CCTNAGG 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 1 cut(s) 1357
EcoT14I CCWWGG 2 cut(s) 130, 1406
EcoT22I ATGCAT 1 cut(s) 898
EcoT38I GRGCYC 4 cut(s) 89, 130, 142, 1341
ErhI CCWWGG 2 cut(s) 130, 1406
FaeI CATG 6 cut(s) 446, 538, 632, 764, 946, 1187
FalI AAGNNNNNCTT 2 cut(s) 1188, 1220
FatI CATG 6 cut(s) 442, 534, 628, 760, 942, 1183
FauI CCCGC 4 cut(s) 57, 128, 178, 562
FbaI TGATCA 1 cut(s) 450
Fnu4HI GCNGC 3 cut(s) 374, 633, 1396
FokI GGATG 3 cut(s) 629, 692, 697
FriOI GRGCYC 4 cut(s) 89, 130, 142, 1341
Fsp4HI GCNGC 3 cut(s) 374, 633, 1396
GlaI GCGC 1 cut(s) 878
GluI GCNGC 3 cut(s) 374, 633, 1396
HaeIII GGCC 5 cut(s) 87, 107, 621, 726, 775
HapII CCGG 5 cut(s) 284, 290, 357, 364, 377
HhaI GCGC 1 cut(s) 879
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 6 cut(s) 446, 538, 632, 764, 946, 1187
Hin6I GCGC 1 cut(s) 877
HinP1I GCGC 1 cut(s) 877
HinfI GANTC 4 cut(s) 188, 275, 1237, 1306
HpaII CCGG 5 cut(s) 284, 290, 357, 364, 377
HphI GGTGA 7 cut(s) 28, 48, 272, 584, 1147, 1223, 1379
Hpy166II GTNNAC 2 cut(s) 989, 1138
Hpy188I TCNGA 4 cut(s) 238, 798, 1218, 1236
Hpy188III TCNNGA 7 cut(s) 350, 424, 443, 454, 938, 1184, 1259
Hpy8I GTNNAC 2 cut(s) 989, 1138
Hpy99I CGWCG 2 cut(s) 79, 301
HpyAV CCTTC 5 cut(s) 237, 251, 391, 1028, 1057
HpyCH4III ACNGT 5 cut(s) 1045, 1057, 1193, 1285, 1392
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 7 cut(s) 595, 626, 896, 1016, 1094, 1103, 1395
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 179, 278, 632, 876, 1100
HpyF3I CTNAG 3 cut(s) 557, 952, 971
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 6 cut(s) 446, 538, 632, 764, 946, 1187
HspAI GCGC 1 cut(s) 877
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 9 cut(s) 96, 330, 431, 450, 478, 860, 967, 1066, 1213
LguI GCTCTTC 1 cut(s) 1185
LmnI GCTCC 7 cut(s) 76, 125, 202, 286, 366, 838, 1123
Lsp1109I GCAGC 2 cut(s) 360, 1407
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 6 cut(s) 260, 572, 742, 1279, 1297, 1367
MalI GATC 9 cut(s) 98, 332, 433, 452, 480, 862, 969, 1068, 1215
MboI GATC 9 cut(s) 96, 330, 431, 450, 478, 860, 967, 1066, 1213
MflI RGATCY 4 cut(s) 478, 860, 967, 1066
MhlI GDGCHC 4 cut(s) 89, 130, 142, 1341
MluCI AATT 5 cut(s) 382, 918, 1011, 1164, 1351
MluI ACGCGT 1 cut(s) 488
MlyI GAGTC 2 cut(s) 197, 284
MmeI TCCRAC 1 cut(s) 816
Mph1103I ATGCAT 1 cut(s) 898
MseI TTAA 4 cut(s) 669, 750, 891, 1113
MspI CCGG 5 cut(s) 284, 290, 357, 364, 377
MspR9I CCNGG 1 cut(s) 1359
Mva1269I GAATGC 1 cut(s) 465
MvaI CCWGG 1 cut(s) 1359
MvnI CGCG 2 cut(s) 79, 490
MwoI GCNNNNNNNGC 6 cut(s) 113, 179, 278, 632, 876, 1100
NdeII GATC 9 cut(s) 96, 330, 431, 450, 478, 860, 967, 1066, 1213
NlaIII CATG 6 cut(s) 446, 538, 632, 764, 946, 1187
NlaIV GGNNCC 8 cut(s) 87, 127, 282, 288, 480, 856, 949, 1068
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 5 cut(s) 260, 572, 1279, 1297, 1367
NsiI ATGCAT 1 cut(s) 898
NspI RCATGY 1 cut(s) 632
PagI TCATGA 2 cut(s) 442, 1183
PciSI GCTCTTC 1 cut(s) 1185
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 1237, 1306
PinAI ACCGGT 1 cut(s) 356
PkrI GCNGC 3 cut(s) 375, 634, 1397
PleI GAGTC 2 cut(s) 196, 283
PpsI GAGTC 2 cut(s) 196, 283
PshAI GACNNNNGTC 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 1357
PspGI CCWGG 1 cut(s) 1357
PspN4I GGNNCC 8 cut(s) 87, 127, 282, 288, 480, 856, 949, 1068
PspOMI GGGCCC 1 cut(s) 85
PspPI GGNCC 6 cut(s) 85, 86, 105, 620, 725, 773
PstNI CAGNNNCTG 1 cut(s) 1100
PsuI RGATCY 4 cut(s) 478, 860, 967, 1066
RsaI GTAC 3 cut(s) 600, 817, 996
RsaNI GTAC 3 cut(s) 599, 816, 995
SapI GCTCTTC 1 cut(s) 1185
SaqAI TTAA 4 cut(s) 669, 750, 891, 1113
SatI GCNGC 3 cut(s) 374, 633, 1396
Sau3AI GATC 9 cut(s) 96, 330, 431, 450, 478, 860, 967, 1066, 1213
Sau96I GGNCC 6 cut(s) 85, 86, 105, 620, 725, 773
SchI GAGTC 2 cut(s) 197, 284
ScrFI CCNGG 1 cut(s) 1359
SduI GDGCHC 4 cut(s) 89, 130, 142, 1341
SfcI CTRYAG 1 cut(s) 786
SpeI ACTAGT 1 cut(s) 991
Sse9I AATT 5 cut(s) 382, 918, 1011, 1164, 1351
SsiI CCGC 5 cut(s) 50, 135, 171, 569, 632
SspI AATATT 1 cut(s) 1087
StyD4I CCNGG 1 cut(s) 1357
StyI CCWWGG 2 cut(s) 130, 1406
TaaI ACNGT 5 cut(s) 1045, 1057, 1193, 1285, 1392
TaiI ACGT 1 cut(s) 267
TaqI TCGA 3 cut(s) 95, 351, 1348
TaqII GACCGA 1 cut(s) 140
TasI AATT 5 cut(s) 382, 918, 1011, 1164, 1351
TatI WGTACW 1 cut(s) 994
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 2 cut(s) 1237, 1306
Tru1I TTAA 4 cut(s) 669, 750, 891, 1113
Tru9I TTAA 4 cut(s) 669, 750, 891, 1113
TscAI CASTG 1 cut(s) 1397
TseFI GTSAC 5 cut(s) 260, 572, 1279, 1297, 1367
TseI GCWGC 2 cut(s) 373, 1395
Tsp45I GTSAC 5 cut(s) 260, 572, 1279, 1297, 1367
TspDTI ATGAA 8 cut(s) 270, 407, 669, 747, 941, 949, 1047, 1172
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 1397
XapI RAATTY 1 cut(s) 1351
XceI RCATGY 1 cut(s) 632
XmaJI CCTAGG 2 cut(s) 130, 1406
ZraI GACGTC 1 cut(s) 265
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.