RchiOBHm_Chr5g0013001

tail specific protease

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
8816072 .. 8820738
4667 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29355

Sequence Viewer

Length: 1413 bp
ATGAGGGTCTTGCTGGTGAGCAACACCACCACACTCTCACTATCTTCCCCGCCATCACCGAAACCCCTAGCTCCGTCGCGTTTGGGCCCAAACTCGATCCATTGGGCCAAGAAAGCTCTTATTGGAGCCCTAGGCGGGGCTCTATCGCTCGGTCTTCTAGTCTCTTCTCCCGCTTCTCTAGCGTTTGAGTCTTCTTCTCCCTCCTCCATTCCAGCTCAACCTCCTCCTCCTTCAGAGTATTGTAAAGAAGACGAAGGTGACGTCATCGCCGAGTCGGCACCGGAGCCGGTGGCGACGAATGAGGGGATTGTGGAGGAGGCTTGGGAGATCGTCAATGACAGCTTTCTCGACACCGGTCGCCGGAGCTGGCTGCCGGAAAACTGGCAGATGAAGAAGGAAGATATAAGGACTAGTTCAATCAAGTCGAGATCAAAGGCTCATGATATGATCAAGCGAATGCTGGCTAGTTTGGGTGATCCTTATACGCGTTTTCTTTCGCCTGATGAGTTCTCCAAGATGGCGAGGTATGACATGAGTGGTATTGGAATAAACCTCAGGGAAGTTCCGGGTGACAATGGAGATGTGAAAGTGAAGGTACTAGGACTTTTATTGGATGGCCCTGCACATGCGGCTGGTGTGAGGCAGGGAGATGAAATACTAGCTGTTAATGGTGTGGATGTGAAAGGGAAATCAGCCTTTGAAGTGTCATCCTTGATACAAGGCCCTAATGAAACATATGTTACTATTAAGGTCAAGCATGGCAATTGTGGGCCTATTCAATCTATAGACGTTCAGAGACAACTTGTTGCTCGTACTCCTGTCTTTTATCGGTTGGAGCCAATAGAAAATGGAACCAGATCTGTTGGCTACTTGCGCCTAAAAGAGTTTAATGCATTGGCGAGAAAGGACTTGGTAATTGCTATGAAGCGACTTCAGGACATGGGTGCCTCATTTTTCATCTTGGATCTTAGAGATAATCGTGGTGGACTAGTACAGGCTGGAATAGAAATTGCAAAGCTATTTCTAAATGAAGGAGAAACGGTTATTTATACTGTTGGGAAGGATCCTCAATACCAACAAAATATTGTTGCAGATACTGCACCATTGATTAAAGCTCCTGTTATTGTTCTGGTGAACAACAATACTGCTAGTGCGAGTGAAATTGTTGCTTCAGCTCTTCATGATAACTGTAAAGGTGTTCTTGTGGGTGATCGGACTTTCGGCAAGGGTCTGATTCAATCTGTTTTTGAACTTCAAGATGGTTCTGGCGTGGTTGTGACTGTTGGCAAGTATGTGACACCGAATCATAAGGACATAAATGGAAATGGAATAGAGCCCGATTATCCAAATTTCCCTGGTTGGGGTGACATCACACAACGGCTTTCACAGTGCAGTACGCTTCCTAGGGGATAA

Protein Analysis

470

Amino Acids

50.71

Weight (kDa)

5.97

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDZ PF00595 178 - 251 5.2e-08 PDZ domain
PDZ_6 PF17820 205 - 252 1.6e-09 PDZ domain
Peptidase_S41 PF03572 288 - 448 2.1e-49 Peptidase family S41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
AccB1I GGYRCC 2 cut(s) 277, 944
AccII CGCG 2 cut(s) 79, 487
AciI CCGC 4 cut(s) 50, 135, 171, 629
AclWI GGATC 5 cut(s) 91, 470, 972, 1058, 1071
AcsI RAATTY 1 cut(s) 1348
AcuI CTGAAG 3 cut(s) 216, 917, 1155
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 4 cut(s) 597, 814, 993, 1396
AfiI CCNNNNNNNGG 5 cut(s) 135, 136, 360, 1360, 1361
AflIII ACRYGT 1 cut(s) 485
AgeI ACCGGT 1 cut(s) 353
AgsI TTSAA 6 cut(s) 417, 701, 779, 1238, 1250, 1256
AhlI ACTAGT 2 cut(s) 410, 988
AjnI CCWGG 1 cut(s) 1354
AluBI AGCT 9 cut(s) 71, 116, 215, 342, 366, 662, 1018, 1115, 1175
AluI AGCT 9 cut(s) 71, 116, 215, 342, 366, 662, 1018, 1115, 1175
Alw26I GTCTC 2 cut(s) 166, 790
AlwI GGATC 5 cut(s) 91, 470, 972, 1058, 1071
AlwNI CAGNNNCTG 1 cut(s) 1097
AoxI GGCC 5 cut(s) 85, 105, 616, 721, 770
ApaI GGGCCC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 370
ApoI RAATTY 1 cut(s) 1348
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
AsiGI ACCGGT 1 cut(s) 353
AspA2I CCTAGG 2 cut(s) 130, 1403
AspLEI GCGC 1 cut(s) 876
AspS9I GGNCC 6 cut(s) 85, 86, 105, 617, 722, 770
AsuC2I CCSGG 1 cut(s) 567
AsuHPI GGTGA 8 cut(s) 28, 48, 269, 485, 581, 1144, 1220, 1376
AvrII CCTAGG 2 cut(s) 130, 1403
AxyI CCTNAGG 1 cut(s) 554
BaeGI GKGCMC 1 cut(s) 89
BamHI GGATCC 1 cut(s) 1063
BanI GGYRCC 2 cut(s) 277, 944
BanII GRGCYC 4 cut(s) 89, 130, 142, 1338
BbsI GAAGAC 3 cut(s) 146, 183, 255
BbvI GCAGC 1 cut(s) 357
BccI CCATC 4 cut(s) 61, 511, 608, 1253
BceAI ACGGC 1 cut(s) 1394
BciT130I CCWGG 1 cut(s) 1356
BclI TGATCA 1 cut(s) 447
BcnI CCSGG 1 cut(s) 567
BcoDI GTCTC 2 cut(s) 166, 790
BcuI ACTAGT 2 cut(s) 410, 988
BfmI CTRYAG 1 cut(s) 783
BglI GCCNNNNNGGC 1 cut(s) 275
BglII AGATCT 1 cut(s) 857
BisI GCNGC 2 cut(s) 371, 630
BlnI CCTAGG 2 cut(s) 130, 1403
BlsI GCNGC 2 cut(s) 372, 631
Bme1390I CCNGG 2 cut(s) 567, 1356
BmgT120I GGNCC 6 cut(s) 85, 86, 105, 617, 722, 770
BmiI GGNNCC 8 cut(s) 87, 127, 279, 285, 837, 853, 946, 1065
BmrFI CCNGG 2 cut(s) 567, 1356
BoxI GACNNNNGTC 1 cut(s) 354
BpiI GAAGAC 3 cut(s) 146, 183, 255
BpuMI CCSGG 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 3 cut(s) 130, 1354, 1403
BsaWI WCCGGW 2 cut(s) 280, 353
BsaXI ACNNNNNCTCC 2 cut(s) 1026, 1056
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 136, 360, 1360, 1361
Bse118I RCCGGY 2 cut(s) 286, 353
Bse1I ACTGG 1 cut(s) 386
Bse21I CCTNAGG 1 cut(s) 554
BseBI CCWGG 1 cut(s) 1356
BseDI CCNNGG 3 cut(s) 130, 1354, 1403
BseGI GGATG 3 cut(s) 619, 682, 707
BseLI CCNNNNNNNGG 5 cut(s) 135, 136, 360, 1360, 1361
BseMII CTCAG 1 cut(s) 568
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 4 cut(s) 193, 213, 216, 329
BseSI GKGCMC 1 cut(s) 89
BseXI GCAGC 1 cut(s) 357
BsgI GTGCAG 3 cut(s) 606, 1083, 1411
Bsh1236I CGCG 2 cut(s) 79, 487
Bsh1285I CGRYCG 1 cut(s) 358
BshFI GGCC 5 cut(s) 87, 107, 618, 723, 772
BshNI GGYRCC 2 cut(s) 277, 944
BshTI ACCGGT 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 358
BsiSI CCGG 6 cut(s) 281, 287, 354, 361, 374, 566
BslI CCNNNNNNNGG 5 cut(s) 135, 136, 360, 1360, 1361
BsmAI GTCTC 2 cut(s) 166, 790
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 5 cut(s) 87, 107, 618, 723, 772
Bsp120I GGGCCC 1 cut(s) 85
Bsp1286I GDGCHC 4 cut(s) 89, 130, 142, 1338
Bsp143I GATC 9 cut(s) 96, 327, 428, 447, 475, 857, 964, 1063, 1210
BspACI CCGC 4 cut(s) 50, 135, 171, 629
BspANI GGCC 5 cut(s) 87, 107, 618, 723, 772
BspCNI CTCAG 1 cut(s) 567
BspFNI CGCG 2 cut(s) 79, 487
BspHI TCATGA 2 cut(s) 439, 1180
BspLI GGNNCC 8 cut(s) 87, 127, 279, 285, 837, 853, 946, 1065
BspPI GGATC 5 cut(s) 91, 470, 972, 1058, 1071
BspQI GCTCTTC 1 cut(s) 1182
BspT107I GGYRCC 2 cut(s) 277, 944
BsrFI RCCGGY 2 cut(s) 286, 353
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 2 cut(s) 286, 353
BssECI CCNNGG 3 cut(s) 130, 1354, 1403
BssMI GATC 9 cut(s) 96, 327, 428, 447, 475, 857, 964, 1063, 1210
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 2 cut(s) 130, 1403
Bst2UI CCWGG 1 cut(s) 1356
Bst4CI ACNGT 5 cut(s) 1042, 1054, 1190, 1282, 1389
Bst6I CTCTTC 2 cut(s) 169, 1182
BstACI GRCGYC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 1097
BstC8I GCNNGC 2 cut(s) 368, 462
BstDEI CTNAG 2 cut(s) 554, 968
BstF5I GGATG 3 cut(s) 619, 682, 707
BstFNI CGCG 2 cut(s) 79, 487
BstHHI GCGC 1 cut(s) 876
BstKTI GATC 9 cut(s) 99, 330, 431, 450, 478, 860, 967, 1066, 1213
BstMAI GTCTC 2 cut(s) 166, 790
BstMBI GATC 9 cut(s) 96, 327, 428, 447, 475, 857, 964, 1063, 1210
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 6 cut(s) 113, 179, 275, 629, 873, 1097
BstNI CCWGG 1 cut(s) 1356
BstNSI RCATGY 1 cut(s) 629
BstPAI GACNNNNGTC 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 565, 1354
BstSFI CTRYAG 1 cut(s) 783
BstSLI GKGCMC 1 cut(s) 89
BstUI CGCG 2 cut(s) 79, 487
BstV1I GCAGC 1 cut(s) 357
BstV2I GAAGAC 3 cut(s) 146, 183, 255
BstX2I RGATCY 3 cut(s) 857, 964, 1063
BstYI RGATCY 3 cut(s) 857, 964, 1063
Bsu36I CCTNAGG 1 cut(s) 554
BsuRI GGCC 5 cut(s) 87, 107, 618, 723, 772
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 3 cut(s) 619, 682, 707
BtsIMutI CAGTG 1 cut(s) 1394
Cac8I GCNNGC 2 cut(s) 368, 462
CaiI CAGNNNCTG 1 cut(s) 1097
CciI TCATGA 2 cut(s) 439, 1180
CfoI GCGC 1 cut(s) 876
Cfr10I RCCGGY 2 cut(s) 286, 353
Cfr13I GGNCC 6 cut(s) 85, 86, 105, 617, 722, 770
Csp6I GTAC 4 cut(s) 596, 813, 992, 1395
CspAI ACCGGT 1 cut(s) 353
CviAII CATG 6 cut(s) 440, 532, 626, 758, 940, 1181
CviQI GTAC 4 cut(s) 596, 813, 992, 1395
DdeI CTNAG 2 cut(s) 554, 968
DpnI GATC 9 cut(s) 98, 329, 430, 449, 477, 859, 966, 1065, 1212
DpnII GATC 9 cut(s) 96, 327, 428, 447, 475, 857, 964, 1063, 1210
Eam1104I CTCTTC 2 cut(s) 169, 1182
EarI CTCTTC 2 cut(s) 169, 1182
Eco130I CCWWGG 2 cut(s) 130, 1403
Eco24I GRGCYC 4 cut(s) 89, 130, 142, 1338
Eco57I CTGAAG 3 cut(s) 216, 917, 1155
Eco81I CCTNAGG 1 cut(s) 554
EcoO109I RGGNCCY 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 1354
EcoT14I CCWWGG 2 cut(s) 130, 1403
EcoT22I ATGCAT 1 cut(s) 895
EcoT38I GRGCYC 4 cut(s) 89, 130, 142, 1338
ErhI CCWWGG 2 cut(s) 130, 1403
FaeI CATG 6 cut(s) 443, 535, 629, 761, 943, 1184
FalI AAGNNNNNCTT 2 cut(s) 1185, 1217
FatI CATG 6 cut(s) 439, 531, 625, 757, 939, 1180
FauI CCCGC 3 cut(s) 57, 128, 178
FauNDI CATATG 1 cut(s) 736
FbaI TGATCA 1 cut(s) 447
Fnu4HI GCNGC 2 cut(s) 371, 630
FokI GGATG 3 cut(s) 626, 689, 694
FriOI GRGCYC 4 cut(s) 89, 130, 142, 1338
Fsp4HI GCNGC 2 cut(s) 371, 630
GlaI GCGC 1 cut(s) 875
GluI GCNGC 2 cut(s) 371, 630
HaeIII GGCC 5 cut(s) 87, 107, 618, 723, 772
HapII CCGG 6 cut(s) 281, 287, 354, 361, 374, 566
HhaI GCGC 1 cut(s) 876
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 6 cut(s) 443, 535, 629, 761, 943, 1184
Hin6I GCGC 1 cut(s) 874
HinP1I GCGC 1 cut(s) 874
HinfI GANTC 4 cut(s) 188, 272, 1234, 1303
HpaII CCGG 6 cut(s) 281, 287, 354, 361, 374, 566
HphI GGTGA 8 cut(s) 28, 48, 269, 485, 581, 1144, 1220, 1376
Hpy166II GTNNAC 2 cut(s) 986, 1135
Hpy188I TCNGA 4 cut(s) 235, 795, 1215, 1233
Hpy188III TCNNGA 6 cut(s) 347, 426, 440, 935, 1181, 1256
Hpy8I GTNNAC 2 cut(s) 986, 1135
Hpy99I CGWCG 2 cut(s) 79, 298
HpyAV CCTTC 6 cut(s) 240, 248, 388, 586, 1025, 1054
HpyCH4III ACNGT 5 cut(s) 1042, 1054, 1190, 1282, 1389
HpyCH4IV ACGT 2 cut(s) 261, 789
HpyCH4V TGCA 6 cut(s) 623, 893, 1013, 1091, 1100, 1392
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 179, 275, 629, 873, 1097
HpyF3I CTNAG 2 cut(s) 554, 968
HpySE526I ACGT 2 cut(s) 261, 789
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 6 cut(s) 443, 535, 629, 761, 943, 1184
HspAI GCGC 1 cut(s) 874
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 9 cut(s) 96, 327, 428, 447, 475, 857, 964, 1063, 1210
LguI GCTCTTC 1 cut(s) 1182
LmnI GCTCC 6 cut(s) 76, 125, 283, 363, 835, 1120
Lsp1109I GCAGC 1 cut(s) 357
MaeII ACGT 2 cut(s) 261, 789
MaeIII GTNAC 6 cut(s) 257, 569, 739, 1276, 1294, 1364
MalI GATC 9 cut(s) 98, 329, 430, 449, 477, 859, 966, 1065, 1212
MboI GATC 9 cut(s) 96, 327, 428, 447, 475, 857, 964, 1063, 1210
MboII GAAGA 9 cut(s) 36, 146, 156, 183, 186, 260, 403, 410, 1169
MfeI CAATTG 1 cut(s) 763
MflI RGATCY 3 cut(s) 857, 964, 1063
MhlI GDGCHC 4 cut(s) 89, 130, 142, 1338
MluCI AATT 5 cut(s) 763, 915, 1008, 1161, 1348
MluI ACGCGT 1 cut(s) 485
MlyI GAGTC 2 cut(s) 197, 281
MmeI TCCRAC 1 cut(s) 813
Mph1103I ATGCAT 1 cut(s) 895
MseI TTAA 4 cut(s) 666, 747, 888, 1110
MspI CCGG 6 cut(s) 281, 287, 354, 361, 374, 566
MspR9I CCNGG 2 cut(s) 567, 1356
MunI CAATTG 1 cut(s) 763
Mva1269I GAATGC 1 cut(s) 462
MvaI CCWGG 1 cut(s) 1356
MvnI CGCG 2 cut(s) 79, 487
MwoI GCNNNNNNNGC 6 cut(s) 113, 179, 275, 629, 873, 1097
NciI CCSGG 1 cut(s) 567
NdeI CATATG 1 cut(s) 736
NdeII GATC 9 cut(s) 96, 327, 428, 447, 475, 857, 964, 1063, 1210
NlaIII CATG 6 cut(s) 443, 535, 629, 761, 943, 1184
NlaIV GGNNCC 8 cut(s) 87, 127, 279, 285, 837, 853, 946, 1065
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 5 cut(s) 257, 569, 1276, 1294, 1364
NsiI ATGCAT 1 cut(s) 895
NspI RCATGY 1 cut(s) 629
PagI TCATGA 2 cut(s) 439, 1180
PciSI GCTCTTC 1 cut(s) 1182
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 267
PctI GAATGC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 1234, 1303
PinAI ACCGGT 1 cut(s) 353
PkrI GCNGC 2 cut(s) 372, 631
PleI GAGTC 2 cut(s) 196, 280
PpsI GAGTC 2 cut(s) 196, 280
PshAI GACNNNNGTC 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 1354
PspGI CCWGG 1 cut(s) 1354
PspN4I GGNNCC 8 cut(s) 87, 127, 279, 285, 837, 853, 946, 1065
PspOMI GGGCCC 1 cut(s) 85
PspPI GGNCC 6 cut(s) 85, 86, 105, 617, 722, 770
PstNI CAGNNNCTG 1 cut(s) 1097
PsuI RGATCY 3 cut(s) 857, 964, 1063
RsaI GTAC 4 cut(s) 597, 814, 993, 1396
RsaNI GTAC 4 cut(s) 596, 813, 992, 1395
SapI GCTCTTC 1 cut(s) 1182
SaqAI TTAA 4 cut(s) 666, 747, 888, 1110
SatI GCNGC 2 cut(s) 371, 630
Sau3AI GATC 9 cut(s) 96, 327, 428, 447, 475, 857, 964, 1063, 1210
Sau96I GGNCC 6 cut(s) 85, 86, 105, 617, 722, 770
SchI GAGTC 2 cut(s) 197, 281
ScrFI CCNGG 2 cut(s) 567, 1356
SduI GDGCHC 4 cut(s) 89, 130, 142, 1338
SfcI CTRYAG 1 cut(s) 783
SpeI ACTAGT 2 cut(s) 410, 988
Sse9I AATT 5 cut(s) 763, 915, 1008, 1161, 1348
SsiI CCGC 4 cut(s) 50, 135, 171, 629
SspI AATATT 1 cut(s) 1084
StyD4I CCNGG 2 cut(s) 565, 1354
StyI CCWWGG 2 cut(s) 130, 1403
TaaI ACNGT 5 cut(s) 1042, 1054, 1190, 1282, 1389
TaiI ACGT 2 cut(s) 264, 792
TaqI TCGA 3 cut(s) 95, 348, 425
TaqII GACCGA 1 cut(s) 140
TasI AATT 5 cut(s) 763, 915, 1008, 1161, 1348
TatI WGTACW 1 cut(s) 991
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 2 cut(s) 1234, 1303
Tru1I TTAA 4 cut(s) 666, 747, 888, 1110
Tru9I TTAA 4 cut(s) 666, 747, 888, 1110
TscAI CASTG 1 cut(s) 1394
TseFI GTSAC 5 cut(s) 257, 569, 1276, 1294, 1364
TseI GCWGC 1 cut(s) 370
Tsp45I GTSAC 5 cut(s) 257, 569, 1276, 1294, 1364
TspDTI ATGAA 7 cut(s) 404, 666, 744, 938, 946, 1044, 1169
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 1394
XapI RAATTY 1 cut(s) 1348
XceI RCATGY 1 cut(s) 629
XmaJI CCTAGG 2 cut(s) 130, 1403
ZraI GACGTC 1 cut(s) 262
Zsp2I ATGCAT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.